data_1ABY
#
_model_server_result.job_id            S1vMxxHzZgXNeD449_lUaA 
_model_server_result.datetime_utc      '2024-11-04 22:34:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1aby 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":147}' 
#
_entry.id    1ABY 
#
_exptl.entry_id    1ABY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              26.017 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CYANIDE ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1ABY 
_cell.length_a            102.54 
_cell.length_b            115.17 
_cell.length_c            56.7 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1ABY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 H N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 F FE HEM . A HEM 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? 
metalc ? metalc2 A NE2 HIS 229 A HIS 229 1_555 G FE HEM . A HEM 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? 
metalc ? metalc3 D C CYN . A CYN 284 1_555 F FE HEM . A HEM 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
metalc ? metalc4 D N CYN . A CYN 284 1_555 F FE HEM . A HEM 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.888 ? 
metalc ? metalc5 E C CYN . A CYN 285 1_555 G FE HEM . A HEM 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
metalc ? metalc6 E N CYN . A CYN 285 1_555 G FE HEM . A HEM 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.126 ? 
metalc ? metalc7 B NE2 HIS 92 B HIS 92 1_555 I FE HEM . B HEM 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? 
metalc ? metalc8 H C CYN . B CYN 147 1_555 I FE HEM . B HEM 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
metalc ? metalc9 C NE2 HIS 92 D HIS 92 1_555 K FE HEM . D HEM 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? 
metalc ? metalc10 J C CYN . D CYN 147 1_555 K FE HEM . D HEM 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
metalc ? metalc11 J N CYN . D CYN 147 1_555 K FE HEM . D HEM 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.812 ? 
#
_chem_comp.formula           'C N -1' 
_chem_comp.formula_weight    26.017 
_chem_comp.id                CYN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CYANIDE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_chem_comp_bond.atom_id_1             C 
_chem_comp_bond.atom_id_2             N 
_chem_comp_bond.comp_id               CYN 
_chem_comp_bond.value_order           trip 
_chem_comp_bond.pdbx_ordinal          70 
_chem_comp_bond.pdbx_stereo_config    n 
_chem_comp_bond.pdbx_aromatic_flag    n 
#
_atom_sites.entry_id                     1ABY 
_atom_sites.fract_transf_matrix[1][1]    0.009752 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008683 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017637 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 CYN A 1 284 2 CYN CYN . 
E 3 CYN A 1 285 4 CYN CYN . 
F 4 HEM A 1 286 1 HEM HEM . 
G 4 HEM A 1 287 3 HEM HEM . 
H 3 CYN B 1 147 2 CYN CYN . 
I 4 HEM B 1 148 1 HEM HEM . 
J 3 CYN D 1 147 2 CYN CYN . 
K 4 HEM D 1 148 1 HEM HEM . 
L 5 HOH A 1 288 5 HOH HOH . 
L 5 HOH A 2 289 6 HOH HOH . 
L 5 HOH A 3 290 7 HOH HOH . 
L 5 HOH A 4 291 8 HOH HOH . 
L 5 HOH A 5 292 10 HOH HOH . 
L 5 HOH A 6 293 11 HOH HOH . 
L 5 HOH A 7 294 12 HOH HOH . 
L 5 HOH A 8 295 13 HOH HOH . 
L 5 HOH A 9 296 14 HOH HOH . 
L 5 HOH A 10 297 15 HOH HOH . 
L 5 HOH A 11 298 16 HOH HOH . 
L 5 HOH A 12 299 17 HOH HOH . 
L 5 HOH A 13 300 18 HOH HOH . 
L 5 HOH A 14 301 23 HOH HOH . 
L 5 HOH A 15 302 25 HOH HOH . 
L 5 HOH A 16 303 27 HOH HOH . 
L 5 HOH A 17 304 28 HOH HOH . 
L 5 HOH A 18 305 29 HOH HOH . 
L 5 HOH A 19 306 30 HOH HOH . 
L 5 HOH A 20 307 31 HOH HOH . 
L 5 HOH A 21 308 35 HOH HOH . 
L 5 HOH A 22 309 37 HOH HOH . 
L 5 HOH A 23 310 38 HOH HOH . 
L 5 HOH A 24 311 39 HOH HOH . 
L 5 HOH A 25 312 41 HOH HOH . 
L 5 HOH A 26 313 44 HOH HOH . 
L 5 HOH A 27 314 49 HOH HOH . 
L 5 HOH A 28 315 50 HOH HOH . 
L 5 HOH A 29 316 51 HOH HOH . 
L 5 HOH A 30 317 52 HOH HOH . 
L 5 HOH A 31 318 53 HOH HOH . 
L 5 HOH A 32 319 54 HOH HOH . 
L 5 HOH A 33 320 55 HOH HOH . 
L 5 HOH A 34 321 56 HOH HOH . 
L 5 HOH A 35 322 57 HOH HOH . 
L 5 HOH A 36 323 58 HOH HOH . 
L 5 HOH A 37 324 59 HOH HOH . 
L 5 HOH A 38 325 60 HOH HOH . 
L 5 HOH A 39 326 61 HOH HOH . 
L 5 HOH A 40 327 62 HOH HOH . 
L 5 HOH A 41 328 63 HOH HOH . 
L 5 HOH A 42 329 64 HOH HOH . 
L 5 HOH A 43 330 65 HOH HOH . 
L 5 HOH A 44 331 66 HOH HOH . 
L 5 HOH A 45 332 68 HOH HOH . 
L 5 HOH A 46 333 72 HOH HOH . 
L 5 HOH A 47 334 73 HOH HOH . 
L 5 HOH A 48 335 75 HOH HOH . 
L 5 HOH A 49 336 81 HOH HOH . 
L 5 HOH A 50 337 82 HOH HOH . 
L 5 HOH A 51 338 83 HOH HOH . 
M 5 HOH B 1 149 1 HOH HOH . 
M 5 HOH B 2 150 2 HOH HOH . 
M 5 HOH B 3 151 4 HOH HOH . 
M 5 HOH B 4 152 9 HOH HOH . 
M 5 HOH B 5 153 19 HOH HOH . 
M 5 HOH B 6 154 20 HOH HOH . 
M 5 HOH B 7 155 21 HOH HOH . 
M 5 HOH B 8 156 22 HOH HOH . 
M 5 HOH B 9 157 26 HOH HOH . 
M 5 HOH B 10 158 36 HOH HOH . 
M 5 HOH B 11 159 40 HOH HOH . 
M 5 HOH B 12 160 43 HOH HOH . 
M 5 HOH B 13 161 46 HOH HOH . 
M 5 HOH B 14 162 47 HOH HOH . 
M 5 HOH B 15 163 69 HOH HOH . 
M 5 HOH B 16 164 74 HOH HOH . 
M 5 HOH B 17 165 76 HOH HOH . 
M 5 HOH B 18 166 77 HOH HOH . 
M 5 HOH B 19 167 78 HOH HOH . 
M 5 HOH B 20 168 79 HOH HOH . 
M 5 HOH B 21 169 80 HOH HOH . 
N 5 HOH D 1 149 3 HOH HOH . 
N 5 HOH D 2 150 24 HOH HOH . 
N 5 HOH D 3 151 32 HOH HOH . 
N 5 HOH D 4 152 33 HOH HOH . 
N 5 HOH D 5 153 34 HOH HOH . 
N 5 HOH D 6 154 42 HOH HOH . 
N 5 HOH D 7 155 45 HOH HOH . 
N 5 HOH D 8 156 48 HOH HOH . 
N 5 HOH D 9 157 67 HOH HOH . 
N 5 HOH D 10 158 70 HOH HOH . 
N 5 HOH D 11 159 71 HOH HOH . 
N 5 HOH D 12 160 84 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C CYN . . . J 3 20.042 24.934 -4.064 1 25.74 ? C CYN 147 D 1 
HETATM 2 N N CYN . . . J 3 20.214 24.18 -3.179 1 28.25 ? N CYN 147 D 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           2 
#