data_1AD5 # _model_server_result.job_id L6aQRQhqlfQI7EpmZqe9zA _model_server_result.datetime_utc '2025-02-22 21:31:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ad5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1}' # _entry.id 1AD5 # _exptl.entry_id 1AD5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1AD5 _cell.length_a 72.767 _cell.length_b 92.36 _cell.length_c 178.29 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AD5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E 1 1 B,F,G,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLN 433 A GLN 526 1_555 A N PTR 434 A PTR 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C PTR 434 A PTR 527 1_555 A N GLN 435 A GLN 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale3 B C GLN 433 B GLN 526 1_555 B N PTR 434 B PTR 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale4 B C PTR 434 B PTR 527 1_555 B N GLN 435 B GLN 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? metalc ? metalc1 E O1B ANP . A ANP 1 1_555 D CA CA . A CA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc2 E O2A ANP . A ANP 1 1_555 D CA CA . A CA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? metalc ? metalc3 C CA CA . A CA 2 1_555 A OE1 GLU 397 A GLU 490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? metalc ? metalc4 C CA CA . A CA 2 1_555 A OE2 GLU 397 A GLU 490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? metalc ? metalc5 C CA CA . A CA 2 1_555 B O GLU 431 B GLU 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? metalc ? metalc6 C CA CA . A CA 2 1_555 B O PTR 434 B PTR 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.716 ? metalc ? metalc7 D CA CA . A CA 3 1_555 A ND2 ASN 308 A ASN 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? metalc ? metalc8 D CA CA . A CA 3 1_555 A OD2 ASP 321 A ASP 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc9 A O GLU 431 A GLU 524 1_555 F CA CA . B CA 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? metalc ? metalc10 A O PTR 434 A PTR 527 1_555 F CA CA . B CA 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? metalc ? metalc11 F CA CA . B CA 1 1_555 B OE2 GLU 397 B GLU 490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? metalc ? metalc12 F CA CA . B CA 1 1_555 B OE1 GLU 397 B GLU 490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.717 ? metalc ? metalc13 G CA CA . B CA 4 1_555 B ND2 ASN 308 B ASN 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc14 G CA CA . B CA 4 1_555 B OD2 ASP 321 B ASP 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc15 G CA CA . B CA 4 1_555 H O2A ANP . B ANP 532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? metalc ? metalc16 G CA CA . B CA 4 1_555 H O1B ANP . B ANP 532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 1AD5 _atom_sites.fract_transf_matrix[1][1] 0.013742 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010827 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005609 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 2 2 CA CA . D 2 CA A 1 3 3 CA CA . E 3 ANP A 1 1 1 ANP ANP . F 2 CA B 1 1 1 CA CA . G 2 CA B 1 4 4 CA CA . H 3 ANP B 1 532 1 ANP ANP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . E 3 22.224 47.759 101.602 1 86.65 ? PG ANP 1 A 1 HETATM 2 O O1G ANP . . . E 3 21.071 47.237 102.392 1 86.58 ? O1G ANP 1 A 1 HETATM 3 O O2G ANP . . . E 3 22.766 46.807 100.592 1 84.37 ? O2G ANP 1 A 1 HETATM 4 O O3G ANP . . . E 3 22.055 49.154 101.117 1 86.28 ? O3G ANP 1 A 1 HETATM 5 P PB ANP . . . E 3 24.713 48.89 102.811 1 69.94 ? PB ANP 1 A 1 HETATM 6 O O1B ANP . . . E 3 25.393 48.628 104.092 1 68.38 ? O1B ANP 1 A 1 HETATM 7 O O2B ANP . . . E 3 24.279 50.287 102.506 1 71 ? O2B ANP 1 A 1 HETATM 8 N N3B ANP . . . E 3 23.411 47.884 102.707 1 77.56 ? N3B ANP 1 A 1 HETATM 9 P PA ANP . . . E 3 26.847 48.735 100.807 1 50.7 ? PA ANP 1 A 1 HETATM 10 O O1A ANP . . . E 3 26.611 49.927 99.959 1 50.81 ? O1A ANP 1 A 1 HETATM 11 O O2A ANP . . . E 3 28.037 48.717 101.674 1 51.66 ? O2A ANP 1 A 1 HETATM 12 O O3A ANP . . . E 3 25.57 48.336 101.651 1 60.77 ? O3A ANP 1 A 1 HETATM 13 O O5' ANP . . . E 3 26.87 47.464 99.906 1 43 ? O5' ANP 1 A 1 HETATM 14 C C5' ANP . . . E 3 27.037 46.182 100.52 1 35.6 ? C5' ANP 1 A 1 HETATM 15 C C4' ANP . . . E 3 27.052 45.083 99.52 1 30.22 ? C4' ANP 1 A 1 HETATM 16 O O4' ANP . . . E 3 28.198 45.312 98.692 1 26.03 ? O4' ANP 1 A 1 HETATM 17 C C3' ANP . . . E 3 27.189 43.705 100.145 1 30.19 ? C3' ANP 1 A 1 HETATM 18 O O3' ANP . . . E 3 26.061 42.968 99.669 1 33.15 ? O3' ANP 1 A 1 HETATM 19 C C2' ANP . . . E 3 28.503 43.162 99.624 1 30.11 ? C2' ANP 1 A 1 HETATM 20 O O2' ANP . . . E 3 28.346 42.052 98.736 1 32.33 ? O2' ANP 1 A 1 HETATM 21 C C1' ANP . . . E 3 29.174 44.277 98.819 1 24.93 ? C1' ANP 1 A 1 HETATM 22 N N9 ANP . . . E 3 30.416 44.825 99.455 1 20.45 ? N9 ANP 1 A 1 HETATM 23 C C8 ANP . . . E 3 30.566 45.959 100.225 1 19.48 ? C8 ANP 1 A 1 HETATM 24 N N7 ANP . . . E 3 31.784 46.189 100.632 1 17.84 ? N7 ANP 1 A 1 HETATM 25 C C5 ANP . . . E 3 32.498 45.122 100.091 1 18.39 ? C5 ANP 1 A 1 HETATM 26 C C6 ANP . . . E 3 33.879 44.764 100.152 1 19.81 ? C6 ANP 1 A 1 HETATM 27 N N6 ANP . . . E 3 34.754 45.505 100.808 1 18.63 ? N6 ANP 1 A 1 HETATM 28 N N1 ANP . . . E 3 34.268 43.646 99.512 1 18.54 ? N1 ANP 1 A 1 HETATM 29 C C2 ANP . . . E 3 33.368 42.928 98.855 1 17.71 ? C2 ANP 1 A 1 HETATM 30 N N3 ANP . . . E 3 32.054 43.142 98.722 1 17.38 ? N3 ANP 1 A 1 HETATM 31 C C4 ANP . . . E 3 31.678 44.283 99.38 1 17.73 ? C4 ANP 1 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #