data_1ADC
#
_model_server_result.job_id            KqlU5ZvWQY613HPU5RT88w 
_model_server_result.datetime_utc      '2025-02-27 06:53:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1adc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":377}' 
#
_entry.id    1ADC 
#
_exptl.entry_id    1ADC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '5-BETA-D-RIBOFURANOSYLPICOLINAMIDE ADENINE-DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         103.1 
_cell.angle_beta          87.8 
_cell.angle_gamma         70.4 
_cell.entry_id            1ADC 
_cell.length_a            51.9 
_cell.length_b            44.8 
_cell.length_c            93 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1ADC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 46 A CYS 46 1_555 C ZN ZN . A ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
metalc ? metalc2 A NE2 HIS 67 A HIS 67 1_555 C ZN ZN . A ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc3 A SG CYS 97 A CYS 97 1_555 D ZN ZN . A ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? 
metalc ? metalc4 A SG CYS 100 A CYS 100 1_555 D ZN ZN . A ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? 
metalc ? metalc5 A SG CYS 103 A CYS 103 1_555 D ZN ZN . A ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? 
metalc ? metalc6 A SG CYS 111 A CYS 111 1_555 D ZN ZN . A ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.815 ? 
metalc ? metalc7 A SG CYS 174 A CYS 174 1_555 C ZN ZN . A ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.909 ? 
metalc ? metalc8 C ZN ZN . A ZN 375 1_555 F O EOH . A EOH 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? 
metalc ? metalc9 B SG CYS 46 B CYS 46 1_555 G ZN ZN . B ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? 
metalc ? metalc10 B NE2 HIS 67 B HIS 67 1_555 G ZN ZN . B ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? 
metalc ? metalc11 B SG CYS 97 B CYS 97 1_555 H ZN ZN . B ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? 
metalc ? metalc12 B SG CYS 100 B CYS 100 1_555 H ZN ZN . B ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
metalc ? metalc13 B SG CYS 103 B CYS 103 1_555 H ZN ZN . B ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? 
metalc ? metalc14 B SG CYS 111 B CYS 111 1_555 H ZN ZN . B ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? 
metalc ? metalc15 B SG CYS 174 B CYS 174 1_555 G ZN ZN . B ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? 
metalc ? metalc16 G ZN ZN . B ZN 375 1_555 J O EOH . B EOH 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.62 ? 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                PAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '5-BETA-D-RIBOFURANOSYLPICOLINAMIDE ADENINE-DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     CPAD 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A PAD doub 245 n n 
PA O2A PAD sing 246 n n 
PA O5B PAD sing 247 n n 
PA O3 PAD sing 248 n n 
O2A HOA2 PAD sing 249 n n 
O5B C5B PAD sing 250 n n 
C5B C4B PAD sing 251 n n 
C5B H51A PAD sing 252 n n 
C5B H52A PAD sing 253 n n 
C4B O4B PAD sing 254 n n 
C4B C3B PAD sing 255 n n 
C4B H4B PAD sing 256 n n 
O4B C1B PAD sing 257 n n 
C3B O3B PAD sing 258 n n 
C3B C2B PAD sing 259 n n 
C3B H3B PAD sing 260 n n 
O3B HO3A PAD sing 261 n n 
C2B O2B PAD sing 262 n n 
C2B C1B PAD sing 263 n n 
C2B H2B PAD sing 264 n n 
O2B HO2A PAD sing 265 n n 
C1B N9A PAD sing 266 n n 
C1B H1B PAD sing 267 n n 
N9A C8A PAD sing 268 n y 
N9A C4A PAD sing 269 n y 
C8A N7A PAD doub 270 n y 
C8A H8A PAD sing 271 n n 
N7A C5A PAD sing 272 n y 
C5A C6A PAD sing 273 n y 
C5A C4A PAD doub 274 n y 
C6A N6A PAD sing 275 n n 
C6A N1A PAD doub 276 n y 
N6A H61A PAD sing 277 n n 
N6A H62A PAD sing 278 n n 
N1A C2A PAD sing 279 n y 
C2A N3A PAD doub 280 n y 
C2A H2A PAD sing 281 n n 
N3A C4A PAD sing 282 n y 
O3 PN PAD sing 283 n n 
PN O1N PAD doub 284 n n 
PN O2N PAD sing 285 n n 
PN O5D PAD sing 286 n n 
O5D C5D PAD sing 287 n n 
C5D C4D PAD sing 288 n n 
C5D H51N PAD sing 289 n n 
C5D H52N PAD sing 290 n n 
C4D O4D PAD sing 291 n n 
C4D C3D PAD sing 292 n n 
C4D H4D PAD sing 293 n n 
O4D C1D PAD sing 294 n n 
C3D O3D PAD sing 295 n n 
C3D C2D PAD sing 296 n n 
C3D H3D PAD sing 297 n n 
O3D HO3N PAD sing 298 n n 
C2D O2D PAD sing 299 n n 
C2D C1D PAD sing 300 n n 
C2D H2D PAD sing 301 n n 
O2D HO2N PAD sing 302 n n 
C1D C1N PAD sing 303 n n 
C1D H1D PAD sing 304 n n 
C1N N2N PAD doub 305 n y 
C1N C6N PAD sing 306 n y 
N2N C3N PAD sing 307 n y 
N2N H2N PAD sing 308 n n 
C3N C7N PAD sing 309 n n 
C3N C4N PAD doub 310 n y 
C7N O7N PAD doub 311 n n 
C7N N7N PAD sing 312 n n 
N7N H71N PAD sing 313 n n 
N7N H72N PAD sing 314 n n 
C4N C5N PAD sing 315 n y 
C4N H4N PAD sing 316 n n 
C5N C6N PAD doub 317 n y 
C5N H5N PAD sing 318 n n 
C6N H6N PAD sing 319 n n 
#
_atom_sites.entry_id                     1ADC 
_atom_sites.fract_transf_matrix[1][1]    0.019268 
_atom_sites.fract_transf_matrix[1][2]    -0.006861 
_atom_sites.fract_transf_matrix[1][3]    -0.002571 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023694 
_atom_sites.fract_transf_matrix[2][3]    0.006234 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011127 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 375 1 ZN ZN . 
D 2 ZN A 1 376 2 ZN ZN . 
E 3 PAD A 1 377 3 PAD PAD . 
F 4 EOH A 1 378 4 EOH EOH . 
G 2 ZN B 1 375 1 ZN ZN . 
H 2 ZN B 1 376 2 ZN ZN . 
I 3 PAD B 1 377 3 PAD PAD . 
J 4 EOH B 1 378 4 EOH EOH . 
K 5 HOH A 1 379 5 HOH HOH . 
K 5 HOH A 2 380 9 HOH HOH . 
K 5 HOH A 3 381 10 HOH HOH . 
K 5 HOH A 4 382 11 HOH HOH . 
K 5 HOH A 5 383 12 HOH HOH . 
K 5 HOH A 6 384 13 HOH HOH . 
K 5 HOH A 7 385 14 HOH HOH . 
K 5 HOH A 8 386 15 HOH HOH . 
K 5 HOH A 9 387 16 HOH HOH . 
K 5 HOH A 10 388 17 HOH HOH . 
K 5 HOH A 11 389 18 HOH HOH . 
K 5 HOH A 12 390 19 HOH HOH . 
K 5 HOH A 13 391 20 HOH HOH . 
K 5 HOH A 14 392 21 HOH HOH . 
K 5 HOH A 15 393 22 HOH HOH . 
K 5 HOH A 16 394 23 HOH HOH . 
K 5 HOH A 17 395 24 HOH HOH . 
K 5 HOH A 18 396 25 HOH HOH . 
K 5 HOH A 19 397 26 HOH HOH . 
K 5 HOH A 20 398 27 HOH HOH . 
K 5 HOH A 21 399 28 HOH HOH . 
K 5 HOH A 22 400 29 HOH HOH . 
K 5 HOH A 23 401 30 HOH HOH . 
K 5 HOH A 24 402 31 HOH HOH . 
K 5 HOH A 25 403 32 HOH HOH . 
K 5 HOH A 26 404 33 HOH HOH . 
K 5 HOH A 27 405 36 HOH HOH . 
K 5 HOH A 28 406 40 HOH HOH . 
L 5 HOH B 1 379 1 HOH HOH . 
L 5 HOH B 2 380 2 HOH HOH . 
L 5 HOH B 3 381 3 HOH HOH . 
L 5 HOH B 4 382 4 HOH HOH . 
L 5 HOH B 5 383 6 HOH HOH . 
L 5 HOH B 6 384 7 HOH HOH . 
L 5 HOH B 7 385 8 HOH HOH . 
L 5 HOH B 8 386 41 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA PAD . . . I 3 -12.261 9.427 -64.434 1 16.33 ? PA PAD 377 B 1 
HETATM 2 O O1A PAD . . . I 3 -11.096 10.322 -64.619 1 4.14 ? O1A PAD 377 B 1 
HETATM 3 O O2A PAD . . . I 3 -13.489 9.453 -65.322 1 9.2 ? O2A PAD 377 B 1 
HETATM 4 O O5B PAD . . . I 3 -12.862 9.751 -62.979 1 15.93 ? O5B PAD 377 B 1 
HETATM 5 C C5B PAD . . . I 3 -12.093 10.309 -61.9 1 12.66 ? C5B PAD 377 B 1 
HETATM 6 C C4B PAD . . . I 3 -13.109 10.971 -60.992 1 10.46 ? C4B PAD 377 B 1 
HETATM 7 O O4B PAD . . . I 3 -12.425 11.181 -59.761 1 8.87 ? O4B PAD 377 B 1 
HETATM 8 C C3B PAD . . . I 3 -13.463 12.354 -61.522 1 14.2 ? C3B PAD 377 B 1 
HETATM 9 O O3B PAD . . . I 3 -14.856 12.631 -61.47 1 14.04 ? O3B PAD 377 B 1 
HETATM 10 C C2B PAD . . . I 3 -12.742 13.295 -60.569 1 14.45 ? C2B PAD 377 B 1 
HETATM 11 O O2B PAD . . . I 3 -13.424 14.555 -60.456 1 15.17 ? O2B PAD 377 B 1 
HETATM 12 C C1B PAD . . . I 3 -12.757 12.472 -59.298 1 11.57 ? C1B PAD 377 B 1 
HETATM 13 N N9A PAD . . . I 3 -11.705 12.88 -58.353 1 9.95 ? N9A PAD 377 B 1 
HETATM 14 C C8A PAD . . . I 3 -10.454 13.186 -58.717 1 9.8 ? C8A PAD 377 B 1 
HETATM 15 N N7A PAD . . . I 3 -9.793 13.748 -57.703 1 12.61 ? N7A PAD 377 B 1 
HETATM 16 C C5A PAD . . . I 3 -10.671 13.712 -56.7 1 3.63 ? C5A PAD 377 B 1 
HETATM 17 C C6A PAD . . . I 3 -10.353 14.118 -55.44 1 4.99 ? C6A PAD 377 B 1 
HETATM 18 N N6A PAD . . . I 3 -9.118 14.581 -55.231 1 11.17 ? N6A PAD 377 B 1 
HETATM 19 N N1A PAD . . . I 3 -11.35 14.109 -54.543 1 4.12 ? N1A PAD 377 B 1 
HETATM 20 C C2A PAD . . . I 3 -12.559 13.716 -54.913 1 2 ? C2A PAD 377 B 1 
HETATM 21 N N3A PAD . . . I 3 -12.838 13.272 -56.126 1 2 ? N3A PAD 377 B 1 
HETATM 22 C C4A PAD . . . I 3 -11.885 13.24 -57.067 1 5.38 ? C4A PAD 377 B 1 
HETATM 23 O O3 PAD . . . I 3 -11.715 7.912 -64.371 1 11.11 ? O3 PAD 377 B 1 
HETATM 24 P PN PAD . . . I 3 -12.419 6.475 -64.509 1 10.55 ? PN PAD 377 B 1 
HETATM 25 O O1N PAD . . . I 3 -12.137 5.957 -65.868 1 16.19 ? O1N PAD 377 B 1 
HETATM 26 O O2N PAD . . . I 3 -13.841 6.406 -64.128 1 9.19 ? O2N PAD 377 B 1 
HETATM 27 O O5D PAD . . . I 3 -11.488 5.599 -63.508 1 13.25 ? O5D PAD 377 B 1 
HETATM 28 C C5D PAD . . . I 3 -10.831 6.054 -62.297 1 8.31 ? C5D PAD 377 B 1 
HETATM 29 C C4D PAD . . . I 3 -9.681 5.225 -61.713 1 3.47 ? C4D PAD 377 B 1 
HETATM 30 O O4D PAD . . . I 3 -9.786 3.775 -61.616 1 8.58 ? O4D PAD 377 B 1 
HETATM 31 C C3D PAD . . . I 3 -8.438 5.439 -62.439 1 2 ? C3D PAD 377 B 1 
HETATM 32 O O3D PAD . . . I 3 -7.433 5.527 -61.449 1 2 ? O3D PAD 377 B 1 
HETATM 33 C C2D PAD . . . I 3 -8.294 4.161 -63.265 1 6.13 ? C2D PAD 377 B 1 
HETATM 34 O O2D PAD . . . I 3 -6.905 3.94 -63.506 1 11.42 ? O2D PAD 377 B 1 
HETATM 35 C C1D PAD . . . I 3 -8.78 3.065 -62.355 1 4.79 ? C1D PAD 377 B 1 
HETATM 36 C C1N PAD . . . I 3 -9.29 1.826 -62.972 1 2 ? C1N PAD 377 B 1 
HETATM 37 N N2N PAD . . . I 3 -8.964 0.569 -62.461 1 11.4 ? N2N PAD 377 B 1 
HETATM 38 C C3N PAD . . . I 3 -9.722 -0.595 -62.783 1 11.26 ? C3N PAD 377 B 1 
HETATM 39 C C7N PAD . . . I 3 -9.5 -1.969 -62.083 1 11.58 ? C7N PAD 377 B 1 
HETATM 40 O O7N PAD . . . I 3 -9.985 -2.999 -62.565 1 10.13 ? O7N PAD 377 B 1 
HETATM 41 N N7N PAD . . . I 3 -8.764 -1.959 -60.957 1 2 ? N7N PAD 377 B 1 
HETATM 42 C C4N PAD . . . I 3 -10.708 -0.486 -63.75 1 8.21 ? C4N PAD 377 B 1 
HETATM 43 C C5N PAD . . . I 3 -10.891 0.743 -64.377 1 2 ? C5N PAD 377 B 1 
HETATM 44 C C6N PAD . . . I 3 -10.195 1.866 -63.996 1 2 ? C6N PAD 377 B 1 
HETATM 45 H HO3A PAD . . . I 3 -14.966 13.624 -61.529 1 0 ? HO3A PAD 377 B 1 
HETATM 46 H HO2A PAD . . . I 3 -12.823 15.265 -60.826 1 0 ? HO2A PAD 377 B 1 
HETATM 47 H H61A PAD . . . I 3 -8.484 14.644 -56.006 1 0 ? H61A PAD 377 B 1 
HETATM 48 H H62A PAD . . . I 3 -8.819 14.793 -54.305 1 0 ? H62A PAD 377 B 1 
HETATM 49 H HO3N PAD . . . I 3 -7.632 6.331 -60.882 1 0 ? HO3N PAD 377 B 1 
HETATM 50 H HO2N PAD . . . I 3 -6.483 3.794 -62.604 1 0 ? HO2N PAD 377 B 1 
HETATM 51 H H71N PAD . . . I 3 -8.393 -1.09 -60.629 1 0 ? H71N PAD 377 B 1 
HETATM 52 H H72N PAD . . . I 3 -8.763 -2.749 -60.34 1 0 ? H72N PAD 377 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           52 
#