data_1ADD
#
_model_server_result.job_id            KaD73svqzmnSiEhrlLQHug 
_model_server_result.datetime_utc      '2025-04-12 09:00:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1add 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":353}' 
#
_entry.id    1ADD 
#
_exptl.entry_id    1ADD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              266.253 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-DEAZA-ADENOSINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          127.05 
_cell.angle_gamma         90 
_cell.entry_id            1ADD 
_cell.length_a            102.39 
_cell.length_b            94.28 
_cell.length_c            73.02 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1ADD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 12 A HIS 15 1_555 B ZN ZN . A ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? 
metalc ? metalc2 A NE2 HIS 14 A HIS 17 1_555 B ZN ZN . A ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc3 A NE2 HIS 211 A HIS 214 1_555 B ZN ZN . A ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
metalc ? metalc4 A OD1 ASP 292 A ASP 295 1_555 B ZN ZN . A ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? 
metalc ? metalc5 B ZN ZN . A ZN 400 1_555 D O HOH . A HOH 461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.801 ? 
#
_chem_comp.formula           'C11 H14 N4 O4' 
_chem_comp.formula_weight    266.253 
_chem_comp.id                1DA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-DEAZA-ADENOSINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O5' C5' 1DA sing 1 n n 
O5' HO5' 1DA sing 2 n n 
C5' C4' 1DA sing 3 n n 
C5' "H5'1" 1DA sing 4 n n 
C5' "H5'2" 1DA sing 5 n n 
C4' O4' 1DA sing 6 n n 
C4' C3' 1DA sing 7 n n 
C4' H4' 1DA sing 8 n n 
O4' C1' 1DA sing 9 n n 
C3' O3' 1DA sing 10 n n 
C3' C2' 1DA sing 11 n n 
C3' H3' 1DA sing 12 n n 
O3' HO3' 1DA sing 13 n n 
C2' O2' 1DA sing 14 n n 
C2' C1' 1DA sing 15 n n 
C2' H2' 1DA sing 16 n n 
O2' HO2' 1DA sing 17 n n 
C1' N9 1DA sing 18 n n 
C1' H1' 1DA sing 19 n n 
N9 C8 1DA sing 20 n y 
N9 C4 1DA sing 21 n y 
C8 N7 1DA doub 22 n y 
C8 H8 1DA sing 23 n n 
N7 C5 1DA sing 24 n y 
C5 C6 1DA sing 25 n y 
C5 C4 1DA doub 26 n y 
C6 N6 1DA sing 27 n n 
C6 C1 1DA doub 28 n y 
N6 HN61 1DA sing 29 n n 
N6 HN62 1DA sing 30 n n 
C1 C2 1DA sing 31 n y 
C1 H1 1DA sing 32 n n 
C2 N3 1DA doub 33 n y 
C2 H2 1DA sing 34 n n 
N3 C4 1DA sing 35 n y 
#
_atom_sites.entry_id                     1ADD 
_atom_sites.fract_transf_matrix[1][1]    0.009767 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007373 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010607 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017159 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 400 400 ZN ZN . 
C 3 1DA A 1 353 353 1DA 1DA . 
D 4 HOH A 1 401 401 HOH HOH . 
D 4 HOH A 2 402 402 HOH HOH . 
D 4 HOH A 3 403 403 HOH HOH . 
D 4 HOH A 4 404 404 HOH HOH . 
D 4 HOH A 5 405 405 HOH HOH . 
D 4 HOH A 6 406 406 HOH HOH . 
D 4 HOH A 7 407 407 HOH HOH . 
D 4 HOH A 8 408 408 HOH HOH . 
D 4 HOH A 9 409 409 HOH HOH . 
D 4 HOH A 10 410 410 HOH HOH . 
D 4 HOH A 11 411 411 HOH HOH . 
D 4 HOH A 12 412 412 HOH HOH . 
D 4 HOH A 13 413 413 HOH HOH . 
D 4 HOH A 14 414 414 HOH HOH . 
D 4 HOH A 15 415 415 HOH HOH . 
D 4 HOH A 16 416 416 HOH HOH . 
D 4 HOH A 17 417 417 HOH HOH . 
D 4 HOH A 18 418 418 HOH HOH . 
D 4 HOH A 19 419 419 HOH HOH . 
D 4 HOH A 20 420 420 HOH HOH . 
D 4 HOH A 21 421 421 HOH HOH . 
D 4 HOH A 22 422 422 HOH HOH . 
D 4 HOH A 23 423 423 HOH HOH . 
D 4 HOH A 24 424 424 HOH HOH . 
D 4 HOH A 25 425 425 HOH HOH . 
D 4 HOH A 26 427 427 HOH HOH . 
D 4 HOH A 27 428 428 HOH HOH . 
D 4 HOH A 28 429 429 HOH HOH . 
D 4 HOH A 29 431 431 HOH HOH . 
D 4 HOH A 30 432 432 HOH HOH . 
D 4 HOH A 31 435 435 HOH HOH . 
D 4 HOH A 32 436 436 HOH HOH . 
D 4 HOH A 33 437 437 HOH HOH . 
D 4 HOH A 34 438 438 HOH HOH . 
D 4 HOH A 35 439 439 HOH HOH . 
D 4 HOH A 36 440 440 HOH HOH . 
D 4 HOH A 37 441 441 HOH HOH . 
D 4 HOH A 38 442 442 HOH HOH . 
D 4 HOH A 39 443 443 HOH HOH . 
D 4 HOH A 40 444 444 HOH HOH . 
D 4 HOH A 41 445 445 HOH HOH . 
D 4 HOH A 42 446 446 HOH HOH . 
D 4 HOH A 43 447 447 HOH HOH . 
D 4 HOH A 44 449 449 HOH HOH . 
D 4 HOH A 45 450 450 HOH HOH . 
D 4 HOH A 46 452 452 HOH HOH . 
D 4 HOH A 47 453 453 HOH HOH . 
D 4 HOH A 48 454 454 HOH HOH . 
D 4 HOH A 49 455 455 HOH HOH . 
D 4 HOH A 50 457 457 HOH HOH . 
D 4 HOH A 51 458 458 HOH HOH . 
D 4 HOH A 52 459 459 HOH HOH . 
D 4 HOH A 53 460 460 HOH HOH . 
D 4 HOH A 54 461 461 HOH HOH . 
D 4 HOH A 55 462 462 HOH HOH . 
D 4 HOH A 56 463 463 HOH HOH . 
D 4 HOH A 57 464 464 HOH HOH . 
D 4 HOH A 58 465 465 HOH HOH . 
D 4 HOH A 59 466 466 HOH HOH . 
D 4 HOH A 60 467 467 HOH HOH . 
D 4 HOH A 61 468 468 HOH HOH . 
D 4 HOH A 62 469 469 HOH HOH . 
D 4 HOH A 63 470 470 HOH HOH . 
D 4 HOH A 64 471 471 HOH HOH . 
D 4 HOH A 65 472 472 HOH HOH . 
D 4 HOH A 66 473 473 HOH HOH . 
D 4 HOH A 67 474 474 HOH HOH . 
D 4 HOH A 68 475 475 HOH HOH . 
D 4 HOH A 69 476 476 HOH HOH . 
D 4 HOH A 70 477 477 HOH HOH . 
D 4 HOH A 71 478 478 HOH HOH . 
D 4 HOH A 72 479 479 HOH HOH . 
D 4 HOH A 73 480 480 HOH HOH . 
D 4 HOH A 74 481 481 HOH HOH . 
D 4 HOH A 75 482 482 HOH HOH . 
D 4 HOH A 76 483 483 HOH HOH . 
D 4 HOH A 77 484 484 HOH HOH . 
D 4 HOH A 78 485 485 HOH HOH . 
D 4 HOH A 79 486 486 HOH HOH . 
D 4 HOH A 80 487 487 HOH HOH . 
D 4 HOH A 81 488 488 HOH HOH . 
D 4 HOH A 82 489 489 HOH HOH . 
D 4 HOH A 83 490 490 HOH HOH . 
D 4 HOH A 84 491 491 HOH HOH . 
D 4 HOH A 85 492 492 HOH HOH . 
D 4 HOH A 86 493 493 HOH HOH . 
D 4 HOH A 87 494 494 HOH HOH . 
D 4 HOH A 88 495 495 HOH HOH . 
D 4 HOH A 89 496 496 HOH HOH . 
D 4 HOH A 90 497 497 HOH HOH . 
D 4 HOH A 91 498 498 HOH HOH . 
D 4 HOH A 92 499 499 HOH HOH . 
D 4 HOH A 93 500 500 HOH HOH . 
D 4 HOH A 94 501 501 HOH HOH . 
D 4 HOH A 95 502 502 HOH HOH . 
D 4 HOH A 96 503 503 HOH HOH . 
D 4 HOH A 97 504 504 HOH HOH . 
D 4 HOH A 98 505 505 HOH HOH . 
D 4 HOH A 99 506 506 HOH HOH . 
D 4 HOH A 100 507 507 HOH HOH . 
D 4 HOH A 101 508 508 HOH HOH . 
D 4 HOH A 102 509 509 HOH HOH . 
D 4 HOH A 103 510 510 HOH HOH . 
D 4 HOH A 104 511 511 HOH HOH . 
D 4 HOH A 105 512 512 HOH HOH . 
D 4 HOH A 106 513 513 HOH HOH . 
D 4 HOH A 107 514 514 HOH HOH . 
D 4 HOH A 108 515 515 HOH HOH . 
D 4 HOH A 109 516 516 HOH HOH . 
D 4 HOH A 110 517 517 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O5' 1DA . . . C 3 8.622 20.519 35.375 1 13.17 ? O5' 1DA 353 A 1 
HETATM 2 C C5' 1DA . . . C 3 9.276 20.015 36.543 1 12.86 ? C5' 1DA 353 A 1 
HETATM 3 C C4' 1DA . . . C 3 8.393 19.039 37.313 1 14.66 ? C4' 1DA 353 A 1 
HETATM 4 O O4' 1DA . . . C 3 7.228 19.713 37.809 1 15.42 ? O4' 1DA 353 A 1 
HETATM 5 C C3' 1DA . . . C 3 7.863 17.888 36.454 1 14.77 ? C3' 1DA 353 A 1 
HETATM 6 O O3' 1DA . . . C 3 8.756 16.771 36.372 1 14.8 ? O3' 1DA 353 A 1 
HETATM 7 C C2' 1DA . . . C 3 6.554 17.523 37.131 1 14.69 ? C2' 1DA 353 A 1 
HETATM 8 O O2' 1DA . . . C 3 6.929 16.611 38.151 1 12.8 ? O2' 1DA 353 A 1 
HETATM 9 C C1' 1DA . . . C 3 6.142 18.785 37.889 1 10.59 ? C1' 1DA 353 A 1 
HETATM 10 N N9 1DA . . . C 3 4.92 19.274 37.394 1 7.18 ? N9 1DA 353 A 1 
HETATM 11 C C8 1DA . . . C 3 4.543 19.389 36.108 1 10.48 ? C8 1DA 353 A 1 
HETATM 12 N N7 1DA . . . C 3 3.28 19.829 36.006 1 8.07 ? N7 1DA 353 A 1 
HETATM 13 C C5 1DA . . . C 3 2.834 19.904 37.288 1 5.95 ? C5 1DA 353 A 1 
HETATM 14 C C6 1DA . . . C 3 1.62 20.246 37.816 1 5.47 ? C6 1DA 353 A 1 
HETATM 15 N N6 1DA . . . C 3 0.568 20.523 37.041 1 7.26 ? N6 1DA 353 A 1 
HETATM 16 C C1 1DA . . . C 3 1.502 20.295 39.187 1 4.67 ? C1 1DA 353 A 1 
HETATM 17 C C2 1DA . . . C 3 2.586 20.004 40.005 1 7.92 ? C2 1DA 353 A 1 
HETATM 18 N N3 1DA . . . C 3 3.749 19.675 39.465 1 5.58 ? N3 1DA 353 A 1 
HETATM 19 C C4 1DA . . . C 3 3.857 19.626 38.129 1 4.4 ? C4 1DA 353 A 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           222 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           19 
#