data_1ADS # _model_server_result.job_id -wXm8YbCOc_1X1pjLiGdKw _model_server_result.datetime_utc '2024-11-26 21:01:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ads # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":350}' # _entry.id 1ADS # _exptl.entry_id 1ADS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ADS _cell.length_a 50 _cell.length_b 67.12 _cell.length_c 92.02 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ADS _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 237 n n PA O2A NAP sing 238 n n PA O5B NAP sing 239 n n PA O3 NAP sing 240 n n O2A HOA2 NAP sing 241 n n O5B C5B NAP sing 242 n n C5B C4B NAP sing 243 n n C5B H51A NAP sing 244 n n C5B H52A NAP sing 245 n n C4B O4B NAP sing 246 n n C4B C3B NAP sing 247 n n C4B H4B NAP sing 248 n n O4B C1B NAP sing 249 n n C3B O3B NAP sing 250 n n C3B C2B NAP sing 251 n n C3B H3B NAP sing 252 n n O3B HO3A NAP sing 253 n n C2B O2B NAP sing 254 n n C2B C1B NAP sing 255 n n C2B H2B NAP sing 256 n n O2B P2B NAP sing 257 n n C1B N9A NAP sing 258 n n C1B H1B NAP sing 259 n n N9A C8A NAP sing 260 n y N9A C4A NAP sing 261 n y C8A N7A NAP doub 262 n y C8A H8A NAP sing 263 n n N7A C5A NAP sing 264 n y C5A C6A NAP sing 265 n y C5A C4A NAP doub 266 n y C6A N6A NAP sing 267 n n C6A N1A NAP doub 268 n y N6A H61A NAP sing 269 n n N6A H62A NAP sing 270 n n N1A C2A NAP sing 271 n y C2A N3A NAP doub 272 n y C2A H2A NAP sing 273 n n N3A C4A NAP sing 274 n y O3 PN NAP sing 275 n n PN O1N NAP doub 276 n n PN O2N NAP sing 277 n n PN O5D NAP sing 278 n n O5D C5D NAP sing 279 n n C5D C4D NAP sing 280 n n C5D H51N NAP sing 281 n n C5D H52N NAP sing 282 n n C4D O4D NAP sing 283 n n C4D C3D NAP sing 284 n n C4D H4D NAP sing 285 n n O4D C1D NAP sing 286 n n C3D O3D NAP sing 287 n n C3D C2D NAP sing 288 n n C3D H3D NAP sing 289 n n O3D HO3N NAP sing 290 n n C2D O2D NAP sing 291 n n C2D C1D NAP sing 292 n n C2D H2D NAP sing 293 n n O2D HO2N NAP sing 294 n n C1D N1N NAP sing 295 n n C1D H1D NAP sing 296 n n N1N C2N NAP sing 297 n y N1N C6N NAP doub 298 n y C2N C3N NAP doub 299 n y C2N H2N NAP sing 300 n n C3N C7N NAP sing 301 n n C3N C4N NAP sing 302 n y C7N O7N NAP doub 303 n n C7N N7N NAP sing 304 n n N7N H71N NAP sing 305 n n N7N H72N NAP sing 306 n n C4N C5N NAP doub 307 n y C4N H4N NAP sing 308 n n C5N C6N NAP sing 309 n y C5N H5N NAP sing 310 n n C6N H6N NAP sing 311 n n P2B O1X NAP doub 312 n n P2B O2X NAP sing 313 n n P2B O3X NAP sing 314 n n O2X HOP2 NAP sing 315 n n O3X HOP3 NAP sing 316 n n # _atom_sites.entry_id 1ADS _atom_sites.fract_transf_matrix[1][1] 0.02 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014899 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010867 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 350 350 NAP NAP . C 3 HOH A 1 400 400 HOH HOH . C 3 HOH A 2 401 401 HOH HOH . C 3 HOH A 3 402 402 HOH HOH . C 3 HOH A 4 403 403 HOH HOH . C 3 HOH A 5 404 404 HOH HOH . C 3 HOH A 6 405 405 HOH HOH . C 3 HOH A 7 406 406 HOH HOH . C 3 HOH A 8 407 407 HOH HOH . C 3 HOH A 9 408 408 HOH HOH . C 3 HOH A 10 409 409 HOH HOH . C 3 HOH A 11 410 410 HOH HOH . C 3 HOH A 12 411 411 HOH HOH . C 3 HOH A 13 412 412 HOH HOH . C 3 HOH A 14 413 413 HOH HOH . C 3 HOH A 15 414 414 HOH HOH . C 3 HOH A 16 415 415 HOH HOH . C 3 HOH A 17 416 416 HOH HOH . C 3 HOH A 18 417 417 HOH HOH . C 3 HOH A 19 418 418 HOH HOH . C 3 HOH A 20 419 419 HOH HOH . C 3 HOH A 21 420 420 HOH HOH . C 3 HOH A 22 421 421 HOH HOH . C 3 HOH A 23 422 422 HOH HOH . C 3 HOH A 24 423 423 HOH HOH . C 3 HOH A 25 424 424 HOH HOH . C 3 HOH A 26 425 425 HOH HOH . C 3 HOH A 27 426 426 HOH HOH . C 3 HOH A 28 427 427 HOH HOH . C 3 HOH A 29 428 428 HOH HOH . C 3 HOH A 30 429 429 HOH HOH . C 3 HOH A 31 430 430 HOH HOH . C 3 HOH A 32 431 431 HOH HOH . C 3 HOH A 33 432 432 HOH HOH . C 3 HOH A 34 433 433 HOH HOH . C 3 HOH A 35 434 434 HOH HOH . C 3 HOH A 36 435 435 HOH HOH . C 3 HOH A 37 436 436 HOH HOH . C 3 HOH A 38 437 437 HOH HOH . C 3 HOH A 39 438 438 HOH HOH . C 3 HOH A 40 439 439 HOH HOH . C 3 HOH A 41 440 440 HOH HOH . C 3 HOH A 42 441 441 HOH HOH . C 3 HOH A 43 442 442 HOH HOH . C 3 HOH A 44 443 443 HOH HOH . C 3 HOH A 45 444 444 HOH HOH . C 3 HOH A 46 445 445 HOH HOH . C 3 HOH A 47 446 446 HOH HOH . C 3 HOH A 48 447 447 HOH HOH . C 3 HOH A 49 448 448 HOH HOH . C 3 HOH A 50 449 449 HOH HOH . C 3 HOH A 51 450 450 HOH HOH . C 3 HOH A 52 451 451 HOH HOH . C 3 HOH A 53 452 452 HOH HOH . C 3 HOH A 54 453 453 HOH HOH . C 3 HOH A 55 454 454 HOH HOH . C 3 HOH A 56 455 455 HOH HOH . C 3 HOH A 57 456 456 HOH HOH . C 3 HOH A 58 457 457 HOH HOH . C 3 HOH A 59 458 458 HOH HOH . C 3 HOH A 60 459 459 HOH HOH . C 3 HOH A 61 460 460 HOH HOH . C 3 HOH A 62 461 461 HOH HOH . C 3 HOH A 63 462 462 HOH HOH . C 3 HOH A 64 463 463 HOH HOH . C 3 HOH A 65 464 464 HOH HOH . C 3 HOH A 66 465 465 HOH HOH . C 3 HOH A 67 466 466 HOH HOH . C 3 HOH A 68 467 467 HOH HOH . C 3 HOH A 69 468 468 HOH HOH . C 3 HOH A 70 469 469 HOH HOH . C 3 HOH A 71 470 470 HOH HOH . C 3 HOH A 72 471 471 HOH HOH . C 3 HOH A 73 472 472 HOH HOH . C 3 HOH A 74 473 473 HOH HOH . C 3 HOH A 75 474 474 HOH HOH . C 3 HOH A 76 475 475 HOH HOH . C 3 HOH A 77 476 476 HOH HOH . C 3 HOH A 78 477 477 HOH HOH . C 3 HOH A 79 478 478 HOH HOH . C 3 HOH A 80 479 479 HOH HOH . C 3 HOH A 81 480 480 HOH HOH . C 3 HOH A 82 481 481 HOH HOH . C 3 HOH A 83 482 482 HOH HOH . C 3 HOH A 84 483 483 HOH HOH . C 3 HOH A 85 484 484 HOH HOH . C 3 HOH A 86 485 485 HOH HOH . C 3 HOH A 87 486 486 HOH HOH . C 3 HOH A 88 487 487 HOH HOH . C 3 HOH A 89 488 488 HOH HOH . C 3 HOH A 90 489 489 HOH HOH . C 3 HOH A 91 490 490 HOH HOH . C 3 HOH A 92 491 491 HOH HOH . C 3 HOH A 93 492 492 HOH HOH . C 3 HOH A 94 493 493 HOH HOH . C 3 HOH A 95 494 494 HOH HOH . C 3 HOH A 96 495 495 HOH HOH . C 3 HOH A 97 496 496 HOH HOH . C 3 HOH A 98 497 497 HOH HOH . C 3 HOH A 99 498 498 HOH HOH . C 3 HOH A 100 499 499 HOH HOH . C 3 HOH A 101 500 500 HOH HOH . C 3 HOH A 102 501 501 HOH HOH . C 3 HOH A 103 502 502 HOH HOH . C 3 HOH A 104 503 503 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 23.507 28.26 72.234 1 5.12 ? PA NAP 350 A 1 HETATM 2 O O1A NAP . . . B 2 24.435 29.29 71.69 1 4.98 ? O1A NAP 350 A 1 HETATM 3 O O2A NAP . . . B 2 22.507 28.67 73.193 1 7.31 ? O2A NAP 350 A 1 HETATM 4 O O5B NAP . . . B 2 24.447 27.076 72.831 1 5.36 ? O5B NAP 350 A 1 HETATM 5 C C5B NAP . . . B 2 23.866 25.866 73.349 1 3.38 ? C5B NAP 350 A 1 HETATM 6 C C4B NAP . . . B 2 24.983 24.943 73.748 1 4.68 ? C4B NAP 350 A 1 HETATM 7 O O4B NAP . . . B 2 25.698 25.588 74.797 1 5.62 ? O4B NAP 350 A 1 HETATM 8 C C3B NAP . . . B 2 24.529 23.609 74.261 1 6.15 ? C3B NAP 350 A 1 HETATM 9 O O3B NAP . . . B 2 25.494 22.61 73.896 1 8.21 ? O3B NAP 350 A 1 HETATM 10 C C2B NAP . . . B 2 24.562 23.792 75.76 1 5.5 ? C2B NAP 350 A 1 HETATM 11 O O2B NAP . . . B 2 24.91 22.568 76.439 1 8.82 ? O2B NAP 350 A 1 HETATM 12 C C1B NAP . . . B 2 25.74 24.725 75.93 1 6.56 ? C1B NAP 350 A 1 HETATM 13 N N9A NAP . . . B 2 25.695 25.581 77.15 1 6.67 ? N9A NAP 350 A 1 HETATM 14 C C8A NAP . . . B 2 24.625 26.273 77.689 1 6.07 ? C8A NAP 350 A 1 HETATM 15 N N7A NAP . . . B 2 24.941 26.921 78.774 1 6.26 ? N7A NAP 350 A 1 HETATM 16 C C5A NAP . . . B 2 26.282 26.666 78.957 1 6.24 ? C5A NAP 350 A 1 HETATM 17 C C6A NAP . . . B 2 27.178 27.061 79.949 1 7.65 ? C6A NAP 350 A 1 HETATM 18 N N6A NAP . . . B 2 26.811 27.829 80.96 1 8.64 ? N6A NAP 350 A 1 HETATM 19 N N1A NAP . . . B 2 28.442 26.615 79.861 1 7.39 ? N1A NAP 350 A 1 HETATM 20 C C2A NAP . . . B 2 28.805 25.83 78.846 1 7.65 ? C2A NAP 350 A 1 HETATM 21 N N3A NAP . . . B 2 28.028 25.407 77.867 1 6.78 ? N3A NAP 350 A 1 HETATM 22 C C4A NAP . . . B 2 26.764 25.881 77.973 1 5.78 ? C4A NAP 350 A 1 HETATM 23 O O3 NAP . . . B 2 22.862 27.461 70.984 1 7.08 ? O3 NAP 350 A 1 HETATM 24 P PN NAP . . . B 2 21.483 27.473 70.162 1 6.06 ? PN NAP 350 A 1 HETATM 25 O O1N NAP . . . B 2 20.703 26.328 70.653 1 6.77 ? O1N NAP 350 A 1 HETATM 26 O O2N NAP . . . B 2 21.92 27.454 68.72 1 7.58 ? O2N NAP 350 A 1 HETATM 27 O O5D NAP . . . B 2 20.776 28.902 70.329 1 5.06 ? O5D NAP 350 A 1 HETATM 28 C C5D NAP . . . B 2 19.913 29.173 71.466 1 4.5 ? C5D NAP 350 A 1 HETATM 29 C C4D NAP . . . B 2 18.419 29.079 71.113 1 5.19 ? C4D NAP 350 A 1 HETATM 30 O O4D NAP . . . B 2 18.164 30.015 70.084 1 5.54 ? O4D NAP 350 A 1 HETATM 31 C C3D NAP . . . B 2 18.035 27.772 70.423 1 4.56 ? C3D NAP 350 A 1 HETATM 32 O O3D NAP . . . B 2 17.89 26.653 71.31 1 4.08 ? O3D NAP 350 A 1 HETATM 33 C C2D NAP . . . B 2 16.711 28.128 69.805 1 4.79 ? C2D NAP 350 A 1 HETATM 34 O O2D NAP . . . B 2 15.727 28.193 70.802 1 4.21 ? O2D NAP 350 A 1 HETATM 35 C C1D NAP . . . B 2 17.07 29.561 69.283 1 5.48 ? C1D NAP 350 A 1 HETATM 36 N N1N NAP . . . B 2 17.493 29.484 67.878 1 6.93 ? N1N NAP 350 A 1 HETATM 37 C C2N NAP . . . B 2 16.645 30.085 66.96 1 6.51 ? C2N NAP 350 A 1 HETATM 38 C C3N NAP . . . B 2 17.008 29.989 65.592 1 8.15 ? C3N NAP 350 A 1 HETATM 39 C C7N NAP . . . B 2 16.187 30.596 64.553 1 9.38 ? C7N NAP 350 A 1 HETATM 40 O O7N NAP . . . B 2 16.441 30.458 63.353 1 11.6 ? O7N NAP 350 A 1 HETATM 41 N N7N NAP . . . B 2 15.139 31.368 64.875 1 6.43 ? N7N NAP 350 A 1 HETATM 42 C C4N NAP . . . B 2 18.17 29.331 65.244 1 8 ? C4N NAP 350 A 1 HETATM 43 C C5N NAP . . . B 2 18.956 28.743 66.144 1 8.48 ? C5N NAP 350 A 1 HETATM 44 C C6N NAP . . . B 2 18.628 28.826 67.461 1 7.35 ? C6N NAP 350 A 1 HETATM 45 P P2B NAP . . . B 2 23.839 21.705 77.25 1 8.81 ? P2B NAP 350 A 1 HETATM 46 O O1X NAP . . . B 2 22.499 21.835 76.622 1 6.06 ? O1X NAP 350 A 1 HETATM 47 O O2X NAP . . . B 2 24.464 20.382 77.126 1 11.18 ? O2X NAP 350 A 1 HETATM 48 O O3X NAP . . . B 2 23.939 22.26 78.604 1 10.35 ? O3X NAP 350 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #