data_1ADY
#
_model_server_result.job_id            oObKMxr1DVK04XJAjJdHxA 
_model_server_result.datetime_utc      '2024-10-11 10:25:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ady 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":423}' 
#
_entry.id    1ADY 
#
_exptl.entry_id    1ADY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              484.361 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'HISTIDYL-ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1ADY 
_cell.length_a            171.3 
_cell.length_b            214.7 
_cell.length_c            49.3 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1ADY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H 1 1 
C,D,I,J,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
_chem_comp.formula           'C16 H21 N8 O8 P' 
_chem_comp.formula_weight    484.361 
_chem_comp.id                HAM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'HISTIDYL-ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P HAM doub 129 n n 
P O2P HAM sing 130 n n 
P O3P HAM sing 131 n n 
P O5' HAM sing 132 n n 
O3P C HAM sing 133 n n 
O5' C5' HAM sing 134 n n 
C5' C4' HAM sing 135 n n 
C5' "H5'1" HAM sing 136 n n 
C5' "H5'2" HAM sing 137 n n 
C4' O4' HAM sing 138 n n 
C4' C3' HAM sing 139 n n 
C4' H4' HAM sing 140 n n 
O4' C1' HAM sing 141 n n 
C3' O3' HAM sing 142 n n 
C3' C2' HAM sing 143 n n 
C3' H3' HAM sing 144 n n 
O3' HO3' HAM sing 145 n n 
C2' O2' HAM sing 146 n n 
C2' C1' HAM sing 147 n n 
C2' H2' HAM sing 148 n n 
O2' HO2' HAM sing 149 n n 
C1' N9 HAM sing 150 n n 
C1' H1' HAM sing 151 n n 
N9 C8 HAM sing 152 n y 
N9 C4 HAM sing 153 n y 
C8 N7 HAM doub 154 n y 
C8 H8 HAM sing 155 n n 
N7 C5 HAM sing 156 n y 
C5 C6 HAM sing 157 n y 
C5 C4 HAM doub 158 n y 
C6 N6 HAM sing 159 n n 
C6 N1 HAM doub 160 n y 
N6 HN61 HAM sing 161 n n 
N6 HN62 HAM sing 162 n n 
N1 C2 HAM sing 163 n y 
C2 N3 HAM doub 164 n y 
C2 H2 HAM sing 165 n n 
N3 C4 HAM sing 166 n y 
C O HAM doub 167 n n 
C CA HAM sing 168 n n 
CA N HAM sing 169 n n 
CA CB HAM sing 170 n n 
CA HA HAM sing 171 n n 
N HN1 HAM sing 172 n n 
N HN2 HAM sing 173 n n 
N HN3 HAM sing 174 n n 
CB CG HAM sing 175 n n 
CB HB1 HAM sing 176 n n 
CB HB2 HAM sing 177 n n 
CG CD2 HAM doub 178 n y 
CG ND1 HAM sing 179 n y 
CD2 NE2 HAM sing 180 n y 
CD2 HD2 HAM sing 181 n n 
ND1 CE1 HAM doub 182 n y 
CE1 NE2 HAM sing 183 n y 
CE1 HE1 HAM sing 184 n n 
NE2 HE2 HAM sing 185 n n 
#
_atom_sites.entry_id                     1ADY 
_atom_sites.fract_transf_matrix[1][1]    0.005838 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004658 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020284 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 SO4 A 1 422 1 SO4 SO4 . 
F 3 HAM A 1 423 1 HAM HAM . 
G 2 SO4 B 1 422 4 SO4 SO4 . 
H 3 HAM B 1 423 1 HAM HAM . 
I 2 SO4 C 1 422 3 SO4 SO4 . 
J 3 HAM C 1 423 1 HAM HAM . 
K 2 SO4 D 1 422 2 SO4 SO4 . 
L 3 HAM D 1 423 1 HAM HAM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P HAM . . . L 3 31.277 76.687 22.055 1 39.42 ? P HAM 423 D 1 
HETATM 2 O O1P HAM . . . L 3 31.891 75.384 22.437 1 42.51 ? O1P HAM 423 D 1 
HETATM 3 O O2P HAM . . . L 3 30.143 76.612 21.106 1 40.77 ? O2P HAM 423 D 1 
HETATM 4 O O3P HAM . . . L 3 30.901 77.462 23.434 1 39.4 ? O3P HAM 423 D 1 
HETATM 5 O O5' HAM . . . L 3 32.312 77.685 21.344 1 37.79 ? O5' HAM 423 D 1 
HETATM 6 C C5' HAM . . . L 3 32.096 79.101 21.374 1 36.32 ? C5' HAM 423 D 1 
HETATM 7 C C4' HAM . . . L 3 32.954 79.708 20.274 1 39.39 ? C4' HAM 423 D 1 
HETATM 8 O O4' HAM . . . L 3 34.312 79.246 20.323 1 38.37 ? O4' HAM 423 D 1 
HETATM 9 C C3' HAM . . . L 3 32.458 79.262 18.894 1 39.27 ? C3' HAM 423 D 1 
HETATM 10 O O3' HAM . . . L 3 31.279 79.848 18.348 1 36.39 ? O3' HAM 423 D 1 
HETATM 11 C C2' HAM . . . L 3 33.651 79.56 17.986 1 39.98 ? C2' HAM 423 D 1 
HETATM 12 O O2' HAM . . . L 3 33.883 80.824 17.346 1 42.14 ? O2' HAM 423 D 1 
HETATM 13 C C1' HAM . . . L 3 34.771 79.285 18.957 1 42.32 ? C1' HAM 423 D 1 
HETATM 14 N N9 HAM . . . L 3 35.329 77.984 18.601 1 44.97 ? N9 HAM 423 D 1 
HETATM 15 C C8 HAM . . . L 3 34.893 76.777 19.011 1 45.78 ? C8 HAM 423 D 1 
HETATM 16 N N7 HAM . . . L 3 35.703 75.807 18.555 1 47.36 ? N7 HAM 423 D 1 
HETATM 17 C C5 HAM . . . L 3 36.631 76.49 17.895 1 46.26 ? C5 HAM 423 D 1 
HETATM 18 C C6 HAM . . . L 3 37.696 75.845 17.295 1 43.94 ? C6 HAM 423 D 1 
HETATM 19 N N6 HAM . . . L 3 37.817 74.549 17.434 1 46.47 ? N6 HAM 423 D 1 
HETATM 20 N N1 HAM . . . L 3 38.537 76.642 16.609 1 41.45 ? N1 HAM 423 D 1 
HETATM 21 C C2 HAM . . . L 3 38.323 77.962 16.519 1 42.51 ? C2 HAM 423 D 1 
HETATM 22 N N3 HAM . . . L 3 37.302 78.577 17.135 1 45.38 ? N3 HAM 423 D 1 
HETATM 23 C C4 HAM . . . L 3 36.438 77.828 17.859 1 47.24 ? C4 HAM 423 D 1 
HETATM 24 C C HAM . . . L 3 31.6 77.606 24.689 1 43.31 ? C HAM 423 D 1 
HETATM 25 O O HAM . . . L 3 32.814 77.396 24.745 1 49.37 ? O HAM 423 D 1 
HETATM 26 C CA HAM . . . L 3 30.859 78.089 25.967 1 44.46 ? CA HAM 423 D 1 
HETATM 27 N N HAM . . . L 3 31.892 78.325 26.979 1 45.1 ? N HAM 423 D 1 
HETATM 28 C CB HAM . . . L 3 30.041 79.359 25.653 1 45.62 ? CB HAM 423 D 1 
HETATM 29 C CG HAM . . . L 3 29.166 79.751 26.793 1 50.12 ? CG HAM 423 D 1 
HETATM 30 C CD2 HAM . . . L 3 29.3 80.731 27.723 1 50.4 ? CD2 HAM 423 D 1 
HETATM 31 N ND1 HAM . . . L 3 28.109 78.97 27.194 1 52.06 ? ND1 HAM 423 D 1 
HETATM 32 C CE1 HAM . . . L 3 27.649 79.433 28.334 1 53.68 ? CE1 HAM 423 D 1 
HETATM 33 N NE2 HAM . . . L 3 28.369 80.48 28.692 1 52.47 ? NE2 HAM 423 D 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           33 
#