data_1AE8 # _model_server_result.job_id uLRFkjnxG6MOk-6ymMUbpA _model_server_result.datetime_utc '2024-12-27 00:46:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ae8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":600}' # _entry.id 1AE8 # _exptl.entry_id 1AE8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 419.518 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-ETHOXYCARBONYL-D-PHE-PRO-2(4-AMINOBUTYL)HYDRAZINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.39 _cell.angle_gamma 90 _cell.entry_id 1AE8 _cell.length_a 71.71 _cell.length_b 72.55 _cell.length_c 73.2 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AE8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? covale ? covale1 B ND2 ASN 53 H ASN 60 1_555 D C1 NAG . H NAG 400 1_555 G ? ? ? ? ? ? ? ? ? ? ? 1.634 ? covale ? covale2 C C GLU 8 I GLU 62 1_555 C N TYS 9 I TYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale3 C C TYS 9 I TYS 63 1_555 C N LEU 10 I LEU 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? # _chem_comp.formula 'C21 H33 N5 O4' _chem_comp.formula_weight 419.518 _chem_comp.id AZL _chem_comp.mon_nstd_flag . _chem_comp.name 1-ETHOXYCARBONYL-D-PHE-PRO-2(4-AMINOBUTYL)HYDRAZINE _chem_comp.type peptide-like _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 AZL sing 70 n n N1 HN11 AZL sing 71 n n N1 HN12 AZL sing 72 n n C2 C3 AZL sing 73 n n C2 H21A AZL sing 74 n n C2 H22A AZL sing 75 n n C3 C4 AZL sing 76 n n C3 H31 AZL sing 77 n n C3 H32 AZL sing 78 n n C4 C5 AZL sing 79 n n C4 H41 AZL sing 80 n n C4 H42 AZL sing 81 n n C5 N6 AZL sing 82 n n C5 H51 AZL sing 83 n n C5 H52 AZL sing 84 n n N6 N7 AZL sing 85 n n N6 HN6 AZL sing 86 n n N7 C8 AZL sing 87 n n N7 HN7 AZL sing 88 n n C8 O8 AZL doub 89 n n C8 C9 AZL sing 90 n n C9 N8 AZL sing 91 n n C9 C10 AZL sing 92 n n C9 H9 AZL sing 93 n n N8 C12 AZL sing 94 n n N8 C14 AZL sing 95 n n C10 C11 AZL sing 96 n n C10 H101 AZL sing 97 n n C10 H102 AZL sing 98 n n C11 C12 AZL sing 99 n n C11 H111 AZL sing 100 n n C11 H112 AZL sing 101 n n C12 H121 AZL sing 102 n n C12 H122 AZL sing 103 n n C14 O14 AZL doub 104 n n C14 C15 AZL sing 105 n n C15 N9 AZL sing 106 n n C15 C16 AZL sing 107 n n C15 H15 AZL sing 108 n n N9 C23 AZL sing 109 n n N9 HN9 AZL sing 110 n n C16 C17 AZL sing 111 n n C16 H161 AZL sing 112 n n C16 H162 AZL sing 113 n n C17 C18 AZL doub 114 n y C17 C22 AZL sing 115 n y C18 C19 AZL sing 116 n y C18 H18 AZL sing 117 n n C19 C20 AZL doub 118 n y C19 H19 AZL sing 119 n n C20 C21 AZL sing 120 n y C20 H20 AZL sing 121 n n C21 C22 AZL doub 122 n y C21 H21 AZL sing 123 n n C22 H22 AZL sing 124 n n C23 O23 AZL doub 125 n n C23 O24 AZL sing 126 n n O24 C24 AZL sing 127 n n C24 C25 AZL sing 128 n n C24 H241 AZL sing 129 n n C24 H242 AZL sing 130 n n C25 H251 AZL sing 131 n n C25 H252 AZL sing 132 n n C25 H253 AZL sing 133 n n # _atom_sites.entry_id 1AE8 _atom_sites.fract_transf_matrix[1][1] 0.013945 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002557 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013784 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013889 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG H 1 400 400 NAG NAG . E 5 AZL H 1 600 600 AZL AZL . F 6 HOH L 1 432 432 HOH HOH . F 6 HOH L 2 437 437 HOH HOH . F 6 HOH L 3 438 438 HOH HOH . F 6 HOH L 4 445 445 HOH HOH . F 6 HOH L 5 448 448 HOH HOH . F 6 HOH L 6 459 459 HOH HOH . F 6 HOH L 7 460 460 HOH HOH . F 6 HOH L 8 463 463 HOH HOH . F 6 HOH L 9 470 470 HOH HOH . F 6 HOH L 10 492 492 HOH HOH . F 6 HOH L 11 503 503 HOH HOH . F 6 HOH L 12 507 507 HOH HOH . F 6 HOH L 13 518 518 HOH HOH . F 6 HOH L 14 523 523 HOH HOH . F 6 HOH L 15 530 530 HOH HOH . F 6 HOH L 16 535 535 HOH HOH . F 6 HOH L 17 536 536 HOH HOH . F 6 HOH L 18 540 540 HOH HOH . F 6 HOH L 19 542 542 HOH HOH . F 6 HOH L 20 558 558 HOH HOH . F 6 HOH L 21 559 559 HOH HOH . G 6 HOH H 1 401 401 HOH HOH . G 6 HOH H 2 402 402 HOH HOH . G 6 HOH H 3 403 403 HOH HOH . G 6 HOH H 4 404 404 HOH HOH . G 6 HOH H 5 405 405 HOH HOH . G 6 HOH H 6 406 406 HOH HOH . G 6 HOH H 7 407 407 HOH HOH . G 6 HOH H 8 408 408 HOH HOH . G 6 HOH H 9 409 409 HOH HOH . G 6 HOH H 10 410 410 HOH HOH . G 6 HOH H 11 411 411 HOH HOH . G 6 HOH H 12 412 412 HOH HOH . G 6 HOH H 13 413 413 HOH HOH . G 6 HOH H 14 414 414 HOH HOH . G 6 HOH H 15 415 415 HOH HOH . G 6 HOH H 16 416 416 HOH HOH . G 6 HOH H 17 417 417 HOH HOH . G 6 HOH H 18 418 418 HOH HOH . G 6 HOH H 19 419 419 HOH HOH . G 6 HOH H 20 420 420 HOH HOH . G 6 HOH H 21 421 421 HOH HOH . G 6 HOH H 22 422 422 HOH HOH . G 6 HOH H 23 423 423 HOH HOH . G 6 HOH H 24 424 424 HOH HOH . G 6 HOH H 25 425 425 HOH HOH . G 6 HOH H 26 426 426 HOH HOH . G 6 HOH H 27 427 427 HOH HOH . G 6 HOH H 28 428 428 HOH HOH . G 6 HOH H 29 429 429 HOH HOH . G 6 HOH H 30 430 430 HOH HOH . G 6 HOH H 31 431 431 HOH HOH . G 6 HOH H 32 433 433 HOH HOH . G 6 HOH H 33 434 434 HOH HOH . G 6 HOH H 34 435 435 HOH HOH . G 6 HOH H 35 436 436 HOH HOH . G 6 HOH H 36 439 439 HOH HOH . G 6 HOH H 37 440 440 HOH HOH . G 6 HOH H 38 441 441 HOH HOH . G 6 HOH H 39 442 442 HOH HOH . G 6 HOH H 40 443 443 HOH HOH . G 6 HOH H 41 444 444 HOH HOH . G 6 HOH H 42 446 446 HOH HOH . G 6 HOH H 43 447 447 HOH HOH . G 6 HOH H 44 449 449 HOH HOH . G 6 HOH H 45 450 450 HOH HOH . G 6 HOH H 46 451 451 HOH HOH . G 6 HOH H 47 452 452 HOH HOH . G 6 HOH H 48 453 453 HOH HOH . G 6 HOH H 49 454 454 HOH HOH . G 6 HOH H 50 455 455 HOH HOH . G 6 HOH H 51 456 456 HOH HOH . G 6 HOH H 52 457 457 HOH HOH . G 6 HOH H 53 458 458 HOH HOH . G 6 HOH H 54 461 461 HOH HOH . G 6 HOH H 55 462 462 HOH HOH . G 6 HOH H 56 464 464 HOH HOH . G 6 HOH H 57 465 465 HOH HOH . G 6 HOH H 58 466 466 HOH HOH . G 6 HOH H 59 467 467 HOH HOH . G 6 HOH H 60 468 468 HOH HOH . G 6 HOH H 61 469 469 HOH HOH . G 6 HOH H 62 472 472 HOH HOH . G 6 HOH H 63 473 473 HOH HOH . G 6 HOH H 64 474 474 HOH HOH . G 6 HOH H 65 475 475 HOH HOH . G 6 HOH H 66 476 476 HOH HOH . G 6 HOH H 67 477 477 HOH HOH . G 6 HOH H 68 478 478 HOH HOH . G 6 HOH H 69 479 479 HOH HOH . G 6 HOH H 70 480 480 HOH HOH . G 6 HOH H 71 481 481 HOH HOH . G 6 HOH H 72 482 482 HOH HOH . G 6 HOH H 73 483 483 HOH HOH . G 6 HOH H 74 484 484 HOH HOH . G 6 HOH H 75 485 485 HOH HOH . G 6 HOH H 76 487 487 HOH HOH . G 6 HOH H 77 488 488 HOH HOH . G 6 HOH H 78 489 489 HOH HOH . G 6 HOH H 79 490 490 HOH HOH . G 6 HOH H 80 491 491 HOH HOH . G 6 HOH H 81 493 493 HOH HOH . G 6 HOH H 82 494 494 HOH HOH . G 6 HOH H 83 495 495 HOH HOH . G 6 HOH H 84 496 496 HOH HOH . G 6 HOH H 85 497 497 HOH HOH . G 6 HOH H 86 498 498 HOH HOH . G 6 HOH H 87 499 499 HOH HOH . G 6 HOH H 88 500 500 HOH HOH . G 6 HOH H 89 501 501 HOH HOH . G 6 HOH H 90 502 502 HOH HOH . G 6 HOH H 91 504 504 HOH HOH . G 6 HOH H 92 505 505 HOH HOH . G 6 HOH H 93 506 506 HOH HOH . G 6 HOH H 94 508 508 HOH HOH . G 6 HOH H 95 509 509 HOH HOH . G 6 HOH H 96 510 510 HOH HOH . G 6 HOH H 97 511 511 HOH HOH . G 6 HOH H 98 512 512 HOH HOH . G 6 HOH H 99 513 513 HOH HOH . G 6 HOH H 100 514 514 HOH HOH . G 6 HOH H 101 515 515 HOH HOH . G 6 HOH H 102 516 516 HOH HOH . G 6 HOH H 103 517 517 HOH HOH . G 6 HOH H 104 519 519 HOH HOH . G 6 HOH H 105 521 521 HOH HOH . G 6 HOH H 106 522 522 HOH HOH . G 6 HOH H 107 524 524 HOH HOH . G 6 HOH H 108 525 525 HOH HOH . G 6 HOH H 109 526 526 HOH HOH . G 6 HOH H 110 527 527 HOH HOH . G 6 HOH H 111 528 528 HOH HOH . G 6 HOH H 112 529 529 HOH HOH . G 6 HOH H 113 531 531 HOH HOH . G 6 HOH H 114 532 532 HOH HOH . G 6 HOH H 115 533 533 HOH HOH . G 6 HOH H 116 534 534 HOH HOH . G 6 HOH H 117 537 537 HOH HOH . G 6 HOH H 118 538 538 HOH HOH . G 6 HOH H 119 539 539 HOH HOH . G 6 HOH H 120 541 541 HOH HOH . G 6 HOH H 121 543 543 HOH HOH . G 6 HOH H 122 544 544 HOH HOH . G 6 HOH H 123 545 545 HOH HOH . G 6 HOH H 124 546 546 HOH HOH . G 6 HOH H 125 548 548 HOH HOH . G 6 HOH H 126 549 549 HOH HOH . G 6 HOH H 127 550 550 HOH HOH . G 6 HOH H 128 551 551 HOH HOH . G 6 HOH H 129 552 552 HOH HOH . G 6 HOH H 130 553 553 HOH HOH . G 6 HOH H 131 555 555 HOH HOH . G 6 HOH H 132 556 556 HOH HOH . G 6 HOH H 133 557 557 HOH HOH . G 6 HOH H 134 560 560 HOH HOH . G 6 HOH H 135 561 561 HOH HOH . G 6 HOH H 136 562 562 HOH HOH . G 6 HOH H 137 563 563 HOH HOH . H 6 HOH I 1 547 547 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C23 AZL . . . E 5 16.77 -18.354 23.828 1 49.08 ? C23 AZL 600 H 1 HETATM 2 O O23 AZL . . . E 5 17.833 -18.734 23.383 1 62.75 ? O23 AZL 600 H 1 HETATM 3 O O24 AZL . . . E 5 15.667 -19.084 23.978 1 56.26 ? O24 AZL 600 H 1 HETATM 4 C C24 AZL . . . E 5 14.603 -19.408 23.099 1 94.1 ? C24 AZL 600 H 1 HETATM 5 C C25 AZL . . . E 5 13.91 -20.709 23.556 0 30 ? C25 AZL 600 H 1 HETATM 6 N N9 AZL . . . E 5 16.774 -17.026 24.138 1 32.16 ? N9 AZL 600 H 1 HETATM 7 C C15 AZL . . . E 5 18.006 -16.279 24.02 1 24.41 ? C15 AZL 600 H 1 HETATM 8 C C14 AZL . . . E 5 17.775 -14.922 23.334 1 22.82 ? C14 AZL 600 H 1 HETATM 9 O O14 AZL . . . E 5 16.86 -14.18 23.667 1 28.08 ? O14 AZL 600 H 1 HETATM 10 C C16 AZL . . . E 5 18.591 -16.095 25.423 1 27.57 ? C16 AZL 600 H 1 HETATM 11 C C17 AZL . . . E 5 19.994 -15.576 25.413 1 29.6 ? C17 AZL 600 H 1 HETATM 12 C C18 AZL . . . E 5 21.054 -16.316 24.877 1 40.28 ? C18 AZL 600 H 1 HETATM 13 C C22 AZL . . . E 5 20.253 -14.336 25.981 1 26.95 ? C22 AZL 600 H 1 HETATM 14 C C19 AZL . . . E 5 22.359 -15.824 24.916 1 33.6 ? C19 AZL 600 H 1 HETATM 15 C C21 AZL . . . E 5 21.551 -13.839 26.029 1 32.98 ? C21 AZL 600 H 1 HETATM 16 C C20 AZL . . . E 5 22.606 -14.58 25.499 1 30.47 ? C20 AZL 600 H 1 HETATM 17 N N8 AZL . . . E 5 18.665 -14.539 22.463 1 20.38 ? N8 AZL 600 H 1 HETATM 18 C C9 AZL . . . E 5 18.536 -13.217 21.859 1 27.96 ? C9 AZL 600 H 1 HETATM 19 C C8 AZL . . . E 5 17.172 -13.036 21.135 1 34.34 ? C8 AZL 600 H 1 HETATM 20 O O8 AZL . . . E 5 16.716 -13.959 20.514 1 26.27 ? O8 AZL 600 H 1 HETATM 21 C C10 AZL . . . E 5 19.688 -13.094 20.863 1 31.12 ? C10 AZL 600 H 1 HETATM 22 C C11 AZL . . . E 5 20.55 -14.346 21.015 1 28.85 ? C11 AZL 600 H 1 HETATM 23 C C12 AZL . . . E 5 19.803 -15.289 21.949 1 28.13 ? C12 AZL 600 H 1 HETATM 24 N N1 AZL . . . E 5 10.571 -12.971 24.084 1 19.76 ? N1 AZL 600 H 1 HETATM 25 C C2 AZL . . . E 5 10.996 -12.161 22.997 1 32.22 ? C2 AZL 600 H 1 HETATM 26 C C3 AZL . . . E 5 12.33 -12.569 22.512 1 34.97 ? C3 AZL 600 H 1 HETATM 27 C C4 AZL . . . E 5 12.968 -11.561 21.589 1 23.04 ? C4 AZL 600 H 1 HETATM 28 C C5 AZL . . . E 5 14.45 -11.466 21.87 1 39.68 ? C5 AZL 600 H 1 HETATM 29 N N6 AZL . . . E 5 15.335 -11.525 20.724 1 20.28 ? N6 AZL 600 H 1 HETATM 30 N N7 AZL . . . E 5 16.647 -11.766 21.051 1 23.6 ? N7 AZL 600 H 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 30 #