data_1AED
#
_model_server_result.job_id            K9T-uBv4bV3FAhbAmbBiyQ 
_model_server_result.datetime_utc      '2024-11-18 10:22:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1aed 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":295}' 
#
_entry.id    1AED 
#
_exptl.entry_id    1AED 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1AED 
_cell.length_a            108 
_cell.length_b            77.3 
_cell.length_c            51.8 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1AED 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 175 A HIS 175 1_555 B FE HEM . A HEM 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? 
metalc ? metalc2 B FE HEM . A HEM 295 1_555 D O HOH . A HOH 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 144 n n 
CHA C4D HEM doub 145 n n 
CHA HHA HEM sing 146 n n 
CHB C4A HEM sing 147 n n 
CHB C1B HEM doub 148 n n 
CHB HHB HEM sing 149 n n 
CHC C4B HEM sing 150 n n 
CHC C1C HEM doub 151 n n 
CHC HHC HEM sing 152 n n 
CHD C4C HEM doub 153 n n 
CHD C1D HEM sing 154 n n 
CHD HHD HEM sing 155 n n 
C1A C2A HEM doub 156 n y 
C1A NA HEM sing 157 n y 
C2A C3A HEM sing 158 n y 
C2A CAA HEM sing 159 n n 
C3A C4A HEM doub 160 n y 
C3A CMA HEM sing 161 n n 
C4A NA HEM sing 162 n y 
CMA HMA HEM sing 163 n n 
CMA HMAA HEM sing 164 n n 
CMA HMAB HEM sing 165 n n 
CAA CBA HEM sing 166 n n 
CAA HAA HEM sing 167 n n 
CAA HAAA HEM sing 168 n n 
CBA CGA HEM sing 169 n n 
CBA HBA HEM sing 170 n n 
CBA HBAA HEM sing 171 n n 
CGA O1A HEM doub 172 n n 
CGA O2A HEM sing 173 n n 
C1B C2B HEM sing 174 n n 
C1B NB HEM sing 175 n n 
C2B C3B HEM doub 176 n n 
C2B CMB HEM sing 177 n n 
C3B C4B HEM sing 178 n n 
C3B CAB HEM sing 179 n n 
C4B NB HEM doub 180 n n 
CMB HMB HEM sing 181 n n 
CMB HMBA HEM sing 182 n n 
CMB HMBB HEM sing 183 n n 
CAB CBB HEM doub 184 n n 
CAB HAB HEM sing 185 n n 
CBB HBB HEM sing 186 n n 
CBB HBBA HEM sing 187 n n 
C1C C2C HEM sing 188 n y 
C1C NC HEM sing 189 n y 
C2C C3C HEM doub 190 n y 
C2C CMC HEM sing 191 n n 
C3C C4C HEM sing 192 n y 
C3C CAC HEM sing 193 n n 
C4C NC HEM sing 194 n y 
CMC HMC HEM sing 195 n n 
CMC HMCA HEM sing 196 n n 
CMC HMCB HEM sing 197 n n 
CAC CBC HEM doub 198 n n 
CAC HAC HEM sing 199 n n 
CBC HBC HEM sing 200 n n 
CBC HBCA HEM sing 201 n n 
C1D C2D HEM sing 202 n n 
C1D ND HEM doub 203 n n 
C2D C3D HEM doub 204 n n 
C2D CMD HEM sing 205 n n 
C3D C4D HEM sing 206 n n 
C3D CAD HEM sing 207 n n 
C4D ND HEM sing 208 n n 
CMD HMD HEM sing 209 n n 
CMD HMDA HEM sing 210 n n 
CMD HMDB HEM sing 211 n n 
CAD CBD HEM sing 212 n n 
CAD HAD HEM sing 213 n n 
CAD HADA HEM sing 214 n n 
CBD CGD HEM sing 215 n n 
CBD HBD HEM sing 216 n n 
CBD HBDA HEM sing 217 n n 
CGD O1D HEM doub 218 n n 
CGD O2D HEM sing 219 n n 
O2A H2A HEM sing 220 n n 
O2D H2D HEM sing 221 n n 
FE NA HEM sing 222 n n 
FE NB HEM sing 223 n n 
FE NC HEM sing 224 n n 
FE ND HEM sing 225 n n 
#
_atom_sites.entry_id                     1AED 
_atom_sites.fract_transf_matrix[1][1]    0.009259 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012937 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019305 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 295 1 HEM HEM . 
C 3 DTI A 1 296 2 DTI 2MA . 
D 4 HOH A 1 300 300 HOH HOH . 
D 4 HOH A 2 301 301 HOH HOH . 
D 4 HOH A 3 302 302 HOH HOH . 
D 4 HOH A 4 304 304 HOH HOH . 
D 4 HOH A 5 305 305 HOH HOH . 
D 4 HOH A 6 306 306 HOH HOH . 
D 4 HOH A 7 307 307 HOH HOH . 
D 4 HOH A 8 309 309 HOH HOH . 
D 4 HOH A 9 310 310 HOH HOH . 
D 4 HOH A 10 311 311 HOH HOH . 
D 4 HOH A 11 312 312 HOH HOH . 
D 4 HOH A 12 313 313 HOH HOH . 
D 4 HOH A 13 314 314 HOH HOH . 
D 4 HOH A 14 315 315 HOH HOH . 
D 4 HOH A 15 316 316 HOH HOH . 
D 4 HOH A 16 317 317 HOH HOH . 
D 4 HOH A 17 318 318 HOH HOH . 
D 4 HOH A 18 319 319 HOH HOH . 
D 4 HOH A 19 320 320 HOH HOH . 
D 4 HOH A 20 321 321 HOH HOH . 
D 4 HOH A 21 322 322 HOH HOH . 
D 4 HOH A 22 323 323 HOH HOH . 
D 4 HOH A 23 324 324 HOH HOH . 
D 4 HOH A 24 325 325 HOH HOH . 
D 4 HOH A 25 326 326 HOH HOH . 
D 4 HOH A 26 327 327 HOH HOH . 
D 4 HOH A 27 328 328 HOH HOH . 
D 4 HOH A 28 329 329 HOH HOH . 
D 4 HOH A 29 330 330 HOH HOH . 
D 4 HOH A 30 331 331 HOH HOH . 
D 4 HOH A 31 332 332 HOH HOH . 
D 4 HOH A 32 333 333 HOH HOH . 
D 4 HOH A 33 334 334 HOH HOH . 
D 4 HOH A 34 335 335 HOH HOH . 
D 4 HOH A 35 336 336 HOH HOH . 
D 4 HOH A 36 337 337 HOH HOH . 
D 4 HOH A 37 338 338 HOH HOH . 
D 4 HOH A 38 339 339 HOH HOH . 
D 4 HOH A 39 340 340 HOH HOH . 
D 4 HOH A 40 341 341 HOH HOH . 
D 4 HOH A 41 342 342 HOH HOH . 
D 4 HOH A 42 344 344 HOH HOH . 
D 4 HOH A 43 345 345 HOH HOH . 
D 4 HOH A 44 346 346 HOH HOH . 
D 4 HOH A 45 347 347 HOH HOH . 
D 4 HOH A 46 348 348 HOH HOH . 
D 4 HOH A 47 349 349 HOH HOH . 
D 4 HOH A 48 350 350 HOH HOH . 
D 4 HOH A 49 355 355 HOH HOH . 
D 4 HOH A 50 356 356 HOH HOH . 
D 4 HOH A 51 357 357 HOH HOH . 
D 4 HOH A 52 358 358 HOH HOH . 
D 4 HOH A 53 359 359 HOH HOH . 
D 4 HOH A 54 405 405 HOH HOH . 
D 4 HOH A 55 406 406 HOH HOH . 
D 4 HOH A 56 407 407 HOH HOH . 
D 4 HOH A 57 408 408 HOH HOH . 
D 4 HOH A 58 409 409 HOH HOH . 
D 4 HOH A 59 410 410 HOH HOH . 
D 4 HOH A 60 411 411 HOH HOH . 
D 4 HOH A 61 412 412 HOH HOH . 
D 4 HOH A 62 413 413 HOH HOH . 
D 4 HOH A 63 414 414 HOH HOH . 
D 4 HOH A 64 415 415 HOH HOH . 
D 4 HOH A 65 416 416 HOH HOH . 
D 4 HOH A 66 417 417 HOH HOH . 
D 4 HOH A 67 418 418 HOH HOH . 
D 4 HOH A 68 419 419 HOH HOH . 
D 4 HOH A 69 420 420 HOH HOH . 
D 4 HOH A 70 421 421 HOH HOH . 
D 4 HOH A 71 422 422 HOH HOH . 
D 4 HOH A 72 423 423 HOH HOH . 
D 4 HOH A 73 424 424 HOH HOH . 
D 4 HOH A 74 425 425 HOH HOH . 
D 4 HOH A 75 426 426 HOH HOH . 
D 4 HOH A 76 427 427 HOH HOH . 
D 4 HOH A 77 428 428 HOH HOH . 
D 4 HOH A 78 429 429 HOH HOH . 
D 4 HOH A 79 430 430 HOH HOH . 
D 4 HOH A 80 431 431 HOH HOH . 
D 4 HOH A 81 432 432 HOH HOH . 
D 4 HOH A 82 433 433 HOH HOH . 
D 4 HOH A 83 434 434 HOH HOH . 
D 4 HOH A 84 435 435 HOH HOH . 
D 4 HOH A 85 436 436 HOH HOH . 
D 4 HOH A 86 437 437 HOH HOH . 
D 4 HOH A 87 438 438 HOH HOH . 
D 4 HOH A 88 439 439 HOH HOH . 
D 4 HOH A 89 440 440 HOH HOH . 
D 4 HOH A 90 441 441 HOH HOH . 
D 4 HOH A 91 442 442 HOH HOH . 
D 4 HOH A 92 443 443 HOH HOH . 
D 4 HOH A 93 444 444 HOH HOH . 
D 4 HOH A 94 445 445 HOH HOH . 
D 4 HOH A 95 446 446 HOH HOH . 
D 4 HOH A 96 447 447 HOH HOH . 
D 4 HOH A 97 448 448 HOH HOH . 
D 4 HOH A 98 449 449 HOH HOH . 
D 4 HOH A 99 450 450 HOH HOH . 
D 4 HOH A 100 451 451 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . B 2 28.023 95.983 50.322 1 9.45 ? CHA HEM 295 A 1 
HETATM 2 C CHB HEM . . . B 2 30.488 95.955 54.392 1 11.2 ? CHB HEM 295 A 1 
HETATM 3 C CHC HEM . . . B 2 28.501 91.785 55.605 1 6.07 ? CHC HEM 295 A 1 
HETATM 4 C CHD HEM . . . B 2 25.669 92.095 51.755 1 3.29 ? CHD HEM 295 A 1 
HETATM 5 C C1A HEM . . . B 2 28.971 96.36 51.305 1 11.28 ? C1A HEM 295 A 1 
HETATM 6 C C2A HEM . . . B 2 29.706 97.532 51.304 1 10.2 ? C2A HEM 295 A 1 
HETATM 7 C C3A HEM . . . B 2 30.418 97.511 52.49 1 10.09 ? C3A HEM 295 A 1 
HETATM 8 C C4A HEM . . . B 2 30.062 96.342 53.121 1 11.93 ? C4A HEM 295 A 1 
HETATM 9 C CMA HEM . . . B 2 31.378 98.552 53.002 1 6.3 ? CMA HEM 295 A 1 
HETATM 10 C CAA HEM . . . B 2 29.712 98.617 50.232 1 12.05 ? CAA HEM 295 A 1 
HETATM 11 C CBA HEM . . . B 2 28.537 99.577 50.332 1 10.04 ? CBA HEM 295 A 1 
HETATM 12 C CGA HEM . . . B 2 28.535 100.578 49.209 1 15.25 ? CGA HEM 295 A 1 
HETATM 13 O O1A HEM . . . B 2 29.506 101.279 48.985 1 16.08 ? O1A HEM 295 A 1 
HETATM 14 O O2A HEM . . . B 2 27.566 100.701 48.491 1 15.92 ? O2A HEM 295 A 1 
HETATM 15 C C1B HEM . . . B 2 30.178 94.809 55.125 1 8.78 ? C1B HEM 295 A 1 
HETATM 16 C C2B HEM . . . B 2 30.8 94.475 56.307 1 11.34 ? C2B HEM 295 A 1 
HETATM 17 C C3B HEM . . . B 2 30.289 93.198 56.624 1 12.39 ? C3B HEM 295 A 1 
HETATM 18 C C4B HEM . . . B 2 29.336 92.908 55.648 1 9.02 ? C4B HEM 295 A 1 
HETATM 19 C CMB HEM . . . B 2 31.873 95.347 56.955 1 8.1 ? CMB HEM 295 A 1 
HETATM 20 C CAB HEM . . . B 2 30.625 92.302 57.645 1 12.58 ? CAB HEM 295 A 1 
HETATM 21 C CBB HEM . . . B 2 31.712 92.41 58.606 1 8.04 ? CBB HEM 295 A 1 
HETATM 22 C C1C HEM . . . B 2 27.45 91.519 54.713 1 8.92 ? C1C HEM 295 A 1 
HETATM 23 C C2C HEM . . . B 2 26.561 90.456 54.831 1 10.45 ? C2C HEM 295 A 1 
HETATM 24 C C3C HEM . . . B 2 25.653 90.628 53.75 1 9.54 ? C3C HEM 295 A 1 
HETATM 25 C C4C HEM . . . B 2 26.135 91.702 53.012 1 10.14 ? C4C HEM 295 A 1 
HETATM 26 C CMC HEM . . . B 2 26.535 89.492 56.031 1 9.34 ? CMC HEM 295 A 1 
HETATM 27 C CAC HEM . . . B 2 24.494 89.928 53.357 1 9.93 ? CAC HEM 295 A 1 
HETATM 28 C CBC HEM . . . B 2 24.015 88.632 53.836 1 3.84 ? CBC HEM 295 A 1 
HETATM 29 C C1D HEM . . . B 2 26.123 93.109 50.901 1 9.03 ? C1D HEM 295 A 1 
HETATM 30 C C2D HEM . . . B 2 25.712 93.317 49.592 1 7.7 ? C2D HEM 295 A 1 
HETATM 31 C C3D HEM . . . B 2 26.395 94.456 49.174 1 7 ? C3D HEM 295 A 1 
HETATM 32 C C4D HEM . . . B 2 27.182 94.854 50.257 1 7.17 ? C4D HEM 295 A 1 
HETATM 33 C CMD HEM . . . B 2 24.753 92.464 48.763 1 9.18 ? CMD HEM 295 A 1 
HETATM 34 C CAD HEM . . . B 2 26.303 95.106 47.805 1 7.08 ? CAD HEM 295 A 1 
HETATM 35 C CBD HEM . . . B 2 25.454 96.365 47.795 1 6.38 ? CBD HEM 295 A 1 
HETATM 36 C CGD HEM . . . B 2 25.333 97.072 46.452 1 8.5 ? CGD HEM 295 A 1 
HETATM 37 O O1D HEM . . . B 2 24.883 98.206 46.417 1 10.45 ? O1D HEM 295 A 1 
HETATM 38 O O2D HEM . . . B 2 25.674 96.528 45.416 1 11.28 ? O2D HEM 295 A 1 
HETATM 39 N NA HEM . . . B 2 29.255 95.613 52.376 1 10.14 ? NA HEM 295 A 1 
HETATM 40 N NB HEM . . . B 2 29.296 93.89 54.742 1 8.77 ? NB HEM 295 A 1 
HETATM 41 N NC HEM . . . B 2 27.14 92.298 53.657 1 8.9 ? NC HEM 295 A 1 
HETATM 42 N ND HEM . . . B 2 27.074 93.988 51.252 1 7.96 ? ND HEM 295 A 1 
HETATM 43 FE FE HEM . . . B 2 28.187 93.948 52.995 1 10.75 ? FE HEM 295 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           43 
#