data_1AER # _model_server_result.job_id DHuLYf0WGIOaULqji4tEnQ _model_server_result.datetime_utc '2025-02-18 06:04:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1aer # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":701}' # _entry.id 1AER # _exptl.entry_id 1AER _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1AER _cell.length_a 87.64 _cell.length_b 87.64 _cell.length_c 133.73 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AER _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 1AER _atom_sites.fract_transf_matrix[1][1] 0.01141 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01141 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007478 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TAD A 1 700 700 TAD TAD . D 3 TIA B 1 700 700 TIA TIA . E 4 AMP B 1 701 701 AMP AMP . F 5 HOH A 1 14 14 HOH HOH . F 5 HOH A 2 17 17 HOH HOH . F 5 HOH A 3 20 20 HOH HOH . F 5 HOH A 4 25 25 HOH HOH . F 5 HOH A 5 26 26 HOH HOH . F 5 HOH A 6 27 27 HOH HOH . F 5 HOH A 7 28 28 HOH HOH . F 5 HOH A 8 29 29 HOH HOH . F 5 HOH A 9 30 30 HOH HOH . F 5 HOH A 10 31 31 HOH HOH . F 5 HOH A 11 33 33 HOH HOH . F 5 HOH A 12 34 34 HOH HOH . F 5 HOH A 13 36 36 HOH HOH . F 5 HOH A 14 37 37 HOH HOH . F 5 HOH A 15 38 38 HOH HOH . F 5 HOH A 16 39 39 HOH HOH . F 5 HOH A 17 41 41 HOH HOH . F 5 HOH A 18 42 42 HOH HOH . F 5 HOH A 19 43 43 HOH HOH . F 5 HOH A 20 44 44 HOH HOH . F 5 HOH A 21 45 45 HOH HOH . F 5 HOH A 22 46 46 HOH HOH . F 5 HOH A 23 47 47 HOH HOH . F 5 HOH A 24 49 49 HOH HOH . F 5 HOH A 25 50 50 HOH HOH . F 5 HOH A 26 51 51 HOH HOH . F 5 HOH A 27 52 52 HOH HOH . F 5 HOH A 28 53 53 HOH HOH . F 5 HOH A 29 54 54 HOH HOH . F 5 HOH A 30 55 55 HOH HOH . F 5 HOH A 31 56 56 HOH HOH . F 5 HOH A 32 57 57 HOH HOH . F 5 HOH A 33 58 58 HOH HOH . F 5 HOH A 34 59 59 HOH HOH . F 5 HOH A 35 60 60 HOH HOH . F 5 HOH A 36 61 61 HOH HOH . F 5 HOH A 37 62 62 HOH HOH . F 5 HOH A 38 63 63 HOH HOH . F 5 HOH A 39 64 64 HOH HOH . F 5 HOH A 40 65 65 HOH HOH . F 5 HOH A 41 66 66 HOH HOH . F 5 HOH A 42 67 67 HOH HOH . F 5 HOH A 43 68 68 HOH HOH . F 5 HOH A 44 69 69 HOH HOH . F 5 HOH A 45 70 70 HOH HOH . F 5 HOH A 46 71 71 HOH HOH . F 5 HOH A 47 72 72 HOH HOH . F 5 HOH A 48 73 73 HOH HOH . F 5 HOH A 49 74 74 HOH HOH . F 5 HOH A 50 75 75 HOH HOH . F 5 HOH A 51 76 76 HOH HOH . F 5 HOH A 52 77 77 HOH HOH . F 5 HOH A 53 78 78 HOH HOH . F 5 HOH A 54 79 79 HOH HOH . F 5 HOH A 55 80 80 HOH HOH . F 5 HOH A 56 81 81 HOH HOH . F 5 HOH A 57 82 82 HOH HOH . F 5 HOH A 58 83 83 HOH HOH . F 5 HOH A 59 84 84 HOH HOH . F 5 HOH A 60 96 96 HOH HOH . F 5 HOH A 61 97 97 HOH HOH . F 5 HOH A 62 98 98 HOH HOH . F 5 HOH A 63 99 99 HOH HOH . F 5 HOH A 64 100 100 HOH HOH . F 5 HOH A 65 101 101 HOH HOH . F 5 HOH A 66 102 102 HOH HOH . F 5 HOH A 67 103 103 HOH HOH . F 5 HOH A 68 104 104 HOH HOH . F 5 HOH A 69 105 105 HOH HOH . F 5 HOH A 70 106 106 HOH HOH . F 5 HOH A 71 107 107 HOH HOH . F 5 HOH A 72 108 108 HOH HOH . F 5 HOH A 73 109 109 HOH HOH . F 5 HOH A 74 111 111 HOH HOH . G 5 HOH B 1 2 2 HOH HOH . G 5 HOH B 2 3 3 HOH HOH . G 5 HOH B 3 4 4 HOH HOH . G 5 HOH B 4 5 5 HOH HOH . G 5 HOH B 5 6 6 HOH HOH . G 5 HOH B 6 8 8 HOH HOH . G 5 HOH B 7 9 9 HOH HOH . G 5 HOH B 8 10 10 HOH HOH . G 5 HOH B 9 11 11 HOH HOH . G 5 HOH B 10 12 12 HOH HOH . G 5 HOH B 11 13 13 HOH HOH . G 5 HOH B 12 15 15 HOH HOH . G 5 HOH B 13 16 16 HOH HOH . G 5 HOH B 14 18 18 HOH HOH . G 5 HOH B 15 19 19 HOH HOH . G 5 HOH B 16 21 21 HOH HOH . G 5 HOH B 17 22 22 HOH HOH . G 5 HOH B 18 23 23 HOH HOH . G 5 HOH B 19 24 24 HOH HOH . G 5 HOH B 20 32 32 HOH HOH . G 5 HOH B 21 35 35 HOH HOH . G 5 HOH B 22 40 40 HOH HOH . G 5 HOH B 23 48 48 HOH HOH . G 5 HOH B 24 85 85 HOH HOH . G 5 HOH B 25 86 86 HOH HOH . G 5 HOH B 26 87 87 HOH HOH . G 5 HOH B 27 88 88 HOH HOH . G 5 HOH B 28 89 89 HOH HOH . G 5 HOH B 29 90 90 HOH HOH . G 5 HOH B 30 91 91 HOH HOH . G 5 HOH B 31 92 92 HOH HOH . G 5 HOH B 32 93 93 HOH HOH . G 5 HOH B 33 94 94 HOH HOH . G 5 HOH B 34 95 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . E 4 23.957 82.741 8.549 1 38.3 ? P AMP 701 B 1 HETATM 2 O O1P AMP . . . E 4 24.628 81.781 9.535 1 38.83 ? O1P AMP 701 B 1 HETATM 3 O O2P AMP . . . E 4 23.646 82.217 7.114 1 42.41 ? O2P AMP 701 B 1 HETATM 4 O O3P AMP . . . E 4 22.734 83.798 9.286 0 38.26 ? O3P AMP 701 B 1 HETATM 5 O O5' AMP . . . E 4 25.221 83.77 8.062 1 40.75 ? O5' AMP 701 B 1 HETATM 6 C C5' AMP . . . E 4 25.228 84.542 6.774 1 33.3 ? C5' AMP 701 B 1 HETATM 7 C C4' AMP . . . E 4 24.879 86.041 6.877 1 28.78 ? C4' AMP 701 B 1 HETATM 8 O O4' AMP . . . E 4 25.844 86.753 7.72 1 25.23 ? O4' AMP 701 B 1 HETATM 9 C C3' AMP . . . E 4 25.116 86.756 5.564 1 27.58 ? C3' AMP 701 B 1 HETATM 10 O O3' AMP . . . E 4 24.555 88.119 5.573 1 30.84 ? O3' AMP 701 B 1 HETATM 11 C C2' AMP . . . E 4 26.652 86.904 5.598 1 24.36 ? C2' AMP 701 B 1 HETATM 12 O O2' AMP . . . E 4 26.865 87.912 4.598 1 22.85 ? O2' AMP 701 B 1 HETATM 13 C C1' AMP . . . E 4 26.87 87.503 6.966 1 21.12 ? C1' AMP 701 B 1 HETATM 14 N N9 AMP . . . E 4 28.271 87.392 7.495 1 17.89 ? N9 AMP 701 B 1 HETATM 15 C C8 AMP . . . E 4 28.909 88.251 8.288 1 12.23 ? C8 AMP 701 B 1 HETATM 16 N N7 AMP . . . E 4 30.107 87.787 8.56 1 17.24 ? N7 AMP 701 B 1 HETATM 17 C C5 AMP . . . E 4 30.171 86.589 7.922 1 19.01 ? C5 AMP 701 B 1 HETATM 18 C C6 AMP . . . E 4 31.257 85.691 7.792 1 19.82 ? C6 AMP 701 B 1 HETATM 19 N N6 AMP . . . E 4 32.411 85.917 8.454 1 20.02 ? N6 AMP 701 B 1 HETATM 20 N N1 AMP . . . E 4 31.111 84.561 7.056 1 17.52 ? N1 AMP 701 B 1 HETATM 21 C C2 AMP . . . E 4 29.964 84.241 6.478 1 18.58 ? C2 AMP 701 B 1 HETATM 22 N N3 AMP . . . E 4 28.951 85.119 6.545 1 19.16 ? N3 AMP 701 B 1 HETATM 23 C C4 AMP . . . E 4 29.031 86.308 7.245 1 19.99 ? C4 AMP 701 B 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #