data_1AF4 # _model_server_result.job_id aXq-pYGGPXIBMeDJGBSNaA _model_server_result.datetime_utc '2025-03-01 04:26:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1af4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":342}' # _entry.id 1AF4 # _exptl.entry_id 1AF4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 88.105 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIETHYLENE DIOXIDE' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1AF4 _cell.length_a 77 _cell.length_b 55.2 _cell.length_c 53.85 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AF4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLN 2 A GLN 2 1_555 B CA CA . A CA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc2 A OD1 ASP 41 A ASP 41 1_555 B CA CA . A CA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? metalc ? metalc3 A OD2 ASP 41 A ASP 41 1_555 B CA CA . A CA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.075 ? metalc ? metalc4 A O LEU 74 A LEU 75 1_555 B CA CA . A CA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc5 A ND2 ASN 76 A ASN 77 1_555 B CA CA . A CA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? metalc ? metalc6 A O THR 78 A THR 79 1_555 B CA CA . A CA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc7 A O VAL 80 A VAL 81 1_555 B CA CA . A CA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? # _chem_comp.formula 'C4 H8 O2' _chem_comp.formula_weight 88.105 _chem_comp.id DIO _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIETHYLENE DIOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C1' DIO sing 70 n n C1 O1 DIO sing 71 n n C1 H11 DIO sing 72 n n C1 H12 DIO sing 73 n n C2 C2' DIO sing 74 n n C2 O1 DIO sing 75 n n C2 H21 DIO sing 76 n n C2 H22 DIO sing 77 n n C1' O1' DIO sing 78 n n C1' "H1'1" DIO sing 79 n n C1' "H1'2" DIO sing 80 n n C2' O1' DIO sing 81 n n C2' "H2'1" DIO sing 82 n n C2' "H2'2" DIO sing 83 n n # _atom_sites.entry_id 1AF4 _atom_sites.fract_transf_matrix[1][1] 0.012987 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018116 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01857 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 276 276 CA CA . C 3 DIO A 1 342 342 DIO DIO . D 3 DIO A 1 343 343 DIO DIO . E 3 DIO A 1 344 344 DIO DIO . F 3 DIO A 1 345 345 DIO DIO . G 3 DIO A 1 346 346 DIO DIO . H 3 DIO A 1 347 347 DIO DIO . I 3 DIO A 1 348 348 DIO DIO . J 4 HOH A 1 277 277 HOH HOH . J 4 HOH A 2 278 278 HOH HOH . J 4 HOH A 3 279 279 HOH HOH . J 4 HOH A 4 280 280 HOH HOH . J 4 HOH A 5 281 281 HOH HOH . J 4 HOH A 6 282 282 HOH HOH . J 4 HOH A 7 283 283 HOH HOH . J 4 HOH A 8 284 284 HOH HOH . J 4 HOH A 9 285 285 HOH HOH . J 4 HOH A 10 286 286 HOH HOH . J 4 HOH A 11 287 287 HOH HOH . J 4 HOH A 12 288 288 HOH HOH . J 4 HOH A 13 289 289 HOH HOH . J 4 HOH A 14 290 290 HOH HOH . J 4 HOH A 15 291 291 HOH HOH . J 4 HOH A 16 292 292 HOH HOH . J 4 HOH A 17 293 293 HOH HOH . J 4 HOH A 18 294 294 HOH HOH . J 4 HOH A 19 295 295 HOH HOH . J 4 HOH A 20 296 296 HOH HOH . J 4 HOH A 21 297 297 HOH HOH . J 4 HOH A 22 298 298 HOH HOH . J 4 HOH A 23 299 299 HOH HOH . J 4 HOH A 24 300 300 HOH HOH . J 4 HOH A 25 301 301 HOH HOH . J 4 HOH A 26 302 302 HOH HOH . J 4 HOH A 27 303 303 HOH HOH . J 4 HOH A 28 304 304 HOH HOH . J 4 HOH A 29 305 305 HOH HOH . J 4 HOH A 30 306 306 HOH HOH . J 4 HOH A 31 307 307 HOH HOH . J 4 HOH A 32 308 308 HOH HOH . J 4 HOH A 33 309 309 HOH HOH . J 4 HOH A 34 310 310 HOH HOH . J 4 HOH A 35 311 311 HOH HOH . J 4 HOH A 36 312 312 HOH HOH . J 4 HOH A 37 313 313 HOH HOH . J 4 HOH A 38 314 314 HOH HOH . J 4 HOH A 39 315 315 HOH HOH . J 4 HOH A 40 316 316 HOH HOH . J 4 HOH A 41 317 317 HOH HOH . J 4 HOH A 42 318 318 HOH HOH . J 4 HOH A 43 319 319 HOH HOH . J 4 HOH A 44 320 320 HOH HOH . J 4 HOH A 45 321 321 HOH HOH . J 4 HOH A 46 322 322 HOH HOH . J 4 HOH A 47 323 323 HOH HOH . J 4 HOH A 48 324 324 HOH HOH . J 4 HOH A 49 325 325 HOH HOH . J 4 HOH A 50 326 326 HOH HOH . J 4 HOH A 51 327 327 HOH HOH . J 4 HOH A 52 328 328 HOH HOH . J 4 HOH A 53 329 329 HOH HOH . J 4 HOH A 54 330 330 HOH HOH . J 4 HOH A 55 331 331 HOH HOH . J 4 HOH A 56 332 332 HOH HOH . J 4 HOH A 57 333 333 HOH HOH . J 4 HOH A 58 334 334 HOH HOH . J 4 HOH A 59 335 335 HOH HOH . J 4 HOH A 60 336 336 HOH HOH . J 4 HOH A 61 337 337 HOH HOH . J 4 HOH A 62 338 338 HOH HOH . J 4 HOH A 63 339 339 HOH HOH . J 4 HOH A 64 340 340 HOH HOH . J 4 HOH A 65 341 341 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DIO . . . C 3 11.157 23.423 -9.959 1 43.74 ? C1 DIO 342 A 1 HETATM 2 C C2 DIO . . . C 3 12.068 25.48 -9.369 1 43.61 ? C2 DIO 342 A 1 HETATM 3 C C1' DIO . . . C 3 11.878 23.441 -11.283 1 42.87 ? C1' DIO 342 A 1 HETATM 4 C C2' DIO . . . C 3 12.845 25.52 -10.751 1 43.98 ? C2' DIO 342 A 1 HETATM 5 O O1 DIO . . . C 3 11.907 24.138 -8.958 1 42.58 ? O1 DIO 342 A 1 HETATM 6 O O1' DIO . . . C 3 12.08 24.793 -11.734 1 45.01 ? O1' DIO 342 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #