data_1AFQ # _model_server_result.job_id cdJhIaOxsdZ0cUWUYrO5bw _model_server_result.datetime_utc '2024-11-07 08:47:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1afq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 1AFQ # _exptl.entry_id 1AFQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details 'AN INHIBITOR FOR CHYMOTRYPSIN' _entity.formula_weight 385.475 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-leucyl-N-(4-fluorobenzyl)-L-phenylalaninamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1AFQ _cell.length_a 69.84 _cell.length_b 69.84 _cell.length_c 97.36 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AFQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 1 A CYS 1 1_555 B SG CYS 107 B CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf2 B SG CYS 27 B CYS 42 1_555 B SG CYS 43 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 B SG CYS 121 B CYS 136 1_555 C SG CYS 52 C CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf4 C SG CYS 19 C CYS 168 1_555 C SG CYS 33 C CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf5 C SG CYS 42 C CYS 191 1_555 C SG CYS 71 C CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? # _chem_comp.formula 'C22 H28 F N3 O2' _chem_comp.formula_weight 385.475 _chem_comp.id 0FG _chem_comp.mon_nstd_flag . _chem_comp.name D-leucyl-N-(4-fluorobenzyl)-L-phenylalaninamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA 0FG sing 1 n n N H 0FG sing 2 n n N H2 0FG sing 3 n n CA CB 0FG sing 4 n n CA C 0FG sing 5 n n CA HA 0FG sing 6 n n CB CG 0FG sing 7 n n CB HB2 0FG sing 8 n n CB HB3 0FG sing 9 n n CG CD1 0FG sing 10 n n CG CD2 0FG sing 11 n n CG HG 0FG sing 12 n n CD1 HD11 0FG sing 13 n n CD1 HD12 0FG sing 14 n n CD1 HD13 0FG sing 15 n n CD2 HD21 0FG sing 16 n n CD2 HD22 0FG sing 17 n n CD2 HD23 0FG sing 18 n n C O 0FG doub 19 n n C N1 0FG sing 20 n n N1 CA1 0FG sing 21 n n N1 H1 0FG sing 22 n n CA1 C1 0FG sing 23 n n CA1 CB1 0FG sing 24 n n CA1 HA1 0FG sing 25 n n C1 O1 0FG doub 26 n n C1 N2 0FG sing 27 n n CB1 CG1 0FG sing 28 n n CB1 HB21 0FG sing 29 n n CB1 HB31 0FG sing 30 n n CG1 CD11 0FG doub 31 n y CG1 CD21 0FG sing 32 n y CD11 CE1 0FG sing 33 n y CD11 HD1 0FG sing 34 n n CD21 CE2 0FG doub 35 n y CD21 HD2 0FG sing 36 n n CE1 CZ 0FG doub 37 n y CE1 HE1 0FG sing 38 n n CE2 CZ 0FG sing 39 n y CE2 HE2 0FG sing 40 n n CZ HZ 0FG sing 41 n n C11 C2 0FG doub 42 n y C11 C6 0FG sing 43 n y C11 C7 0FG sing 44 n n C2 C3 0FG sing 45 n y C2 H21 0FG sing 46 n n C3 C4 0FG doub 47 n y C3 H3 0FG sing 48 n n C4 C5 0FG sing 49 n y C4 F 0FG sing 50 n n C5 C6 0FG doub 51 n y C5 H5 0FG sing 52 n n C6 H6 0FG sing 53 n n C7 N2 0FG sing 54 n n C7 H11 0FG sing 55 n n C7 H2A 0FG sing 56 n n N2 HN2 0FG sing 57 n n # _atom_sites.entry_id 1AFQ _atom_sites.fract_transf_matrix[1][1] 0.014318 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014318 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010271 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 0FG B 1 304 304 0FG DLE . E 5 SO4 B 1 401 401 SO4 SO4 . F 4 0FG C 1 301 301 0FG DLE . G 6 HOH A 1 542 542 HOH HOH . G 6 HOH A 2 548 548 HOH HOH . G 6 HOH A 3 552 552 HOH HOH . G 6 HOH A 4 566 566 HOH HOH . G 6 HOH A 5 576 576 HOH HOH . G 6 HOH A 6 577 577 HOH HOH . H 6 HOH B 1 501 501 HOH HOH . H 6 HOH B 2 502 502 HOH HOH . H 6 HOH B 3 503 503 HOH HOH . H 6 HOH B 4 504 504 HOH HOH . H 6 HOH B 5 505 505 HOH HOH . H 6 HOH B 6 506 506 HOH HOH . H 6 HOH B 7 509 509 HOH HOH . H 6 HOH B 8 510 510 HOH HOH . H 6 HOH B 9 512 512 HOH HOH . H 6 HOH B 10 513 513 HOH HOH . H 6 HOH B 11 516 516 HOH HOH . H 6 HOH B 12 517 517 HOH HOH . H 6 HOH B 13 518 518 HOH HOH . H 6 HOH B 14 522 522 HOH HOH . H 6 HOH B 15 524 524 HOH HOH . H 6 HOH B 16 525 525 HOH HOH . H 6 HOH B 17 526 526 HOH HOH . H 6 HOH B 18 527 527 HOH HOH . H 6 HOH B 19 529 529 HOH HOH . H 6 HOH B 20 530 530 HOH HOH . H 6 HOH B 21 533 533 HOH HOH . H 6 HOH B 22 534 534 HOH HOH . H 6 HOH B 23 536 536 HOH HOH . H 6 HOH B 24 537 537 HOH HOH . H 6 HOH B 25 538 538 HOH HOH . H 6 HOH B 26 540 540 HOH HOH . H 6 HOH B 27 541 541 HOH HOH . H 6 HOH B 28 543 543 HOH HOH . H 6 HOH B 29 546 546 HOH HOH . H 6 HOH B 30 547 547 HOH HOH . H 6 HOH B 31 549 549 HOH HOH . H 6 HOH B 32 550 550 HOH HOH . H 6 HOH B 33 551 551 HOH HOH . H 6 HOH B 34 553 553 HOH HOH . H 6 HOH B 35 554 554 HOH HOH . H 6 HOH B 36 556 556 HOH HOH . H 6 HOH B 37 557 557 HOH HOH . H 6 HOH B 38 558 558 HOH HOH . H 6 HOH B 39 561 561 HOH HOH . H 6 HOH B 40 562 562 HOH HOH . H 6 HOH B 41 563 563 HOH HOH . H 6 HOH B 42 567 567 HOH HOH . H 6 HOH B 43 568 568 HOH HOH . H 6 HOH B 44 570 570 HOH HOH . H 6 HOH B 45 572 572 HOH HOH . H 6 HOH B 46 573 573 HOH HOH . H 6 HOH B 47 575 575 HOH HOH . H 6 HOH B 48 578 578 HOH HOH . H 6 HOH B 49 579 579 HOH HOH . H 6 HOH B 50 580 580 HOH HOH . H 6 HOH B 51 583 583 HOH HOH . H 6 HOH B 52 584 584 HOH HOH . H 6 HOH B 53 585 585 HOH HOH . H 6 HOH B 54 586 586 HOH HOH . H 6 HOH B 55 589 589 HOH HOH . H 6 HOH B 56 591 591 HOH HOH . H 6 HOH B 57 593 593 HOH HOH . H 6 HOH B 58 597 597 HOH HOH . H 6 HOH B 59 599 599 HOH HOH . H 6 HOH B 60 600 600 HOH HOH . H 6 HOH B 61 601 601 HOH HOH . H 6 HOH B 62 602 602 HOH HOH . H 6 HOH B 63 604 604 HOH HOH . H 6 HOH B 64 606 606 HOH HOH . H 6 HOH B 65 607 607 HOH HOH . H 6 HOH B 66 608 608 HOH HOH . H 6 HOH B 67 609 609 HOH HOH . H 6 HOH B 68 610 610 HOH HOH . H 6 HOH B 69 611 611 HOH HOH . H 6 HOH B 70 612 612 HOH HOH . H 6 HOH B 71 613 613 HOH HOH . H 6 HOH B 72 615 615 HOH HOH . H 6 HOH B 73 616 616 HOH HOH . H 6 HOH B 74 617 617 HOH HOH . H 6 HOH B 75 618 618 HOH HOH . H 6 HOH B 76 619 619 HOH HOH . H 6 HOH B 77 620 620 HOH HOH . H 6 HOH B 78 621 621 HOH HOH . H 6 HOH B 79 623 623 HOH HOH . H 6 HOH B 80 624 624 HOH HOH . H 6 HOH B 81 625 625 HOH HOH . H 6 HOH B 82 627 627 HOH HOH . I 6 HOH C 1 507 507 HOH HOH . I 6 HOH C 2 508 508 HOH HOH . I 6 HOH C 3 511 511 HOH HOH . I 6 HOH C 4 514 514 HOH HOH . I 6 HOH C 5 515 515 HOH HOH . I 6 HOH C 6 519 519 HOH HOH . I 6 HOH C 7 520 520 HOH HOH . I 6 HOH C 8 521 521 HOH HOH . I 6 HOH C 9 523 523 HOH HOH . I 6 HOH C 10 528 528 HOH HOH . I 6 HOH C 11 531 531 HOH HOH . I 6 HOH C 12 532 532 HOH HOH . I 6 HOH C 13 535 535 HOH HOH . I 6 HOH C 14 539 539 HOH HOH . I 6 HOH C 15 544 544 HOH HOH . I 6 HOH C 16 545 545 HOH HOH . I 6 HOH C 17 555 555 HOH HOH . I 6 HOH C 18 559 559 HOH HOH . I 6 HOH C 19 560 560 HOH HOH . I 6 HOH C 20 564 564 HOH HOH . I 6 HOH C 21 565 565 HOH HOH . I 6 HOH C 22 569 569 HOH HOH . I 6 HOH C 23 571 571 HOH HOH . I 6 HOH C 24 574 574 HOH HOH . I 6 HOH C 25 581 581 HOH HOH . I 6 HOH C 26 582 582 HOH HOH . I 6 HOH C 27 587 587 HOH HOH . I 6 HOH C 28 588 588 HOH HOH . I 6 HOH C 29 590 590 HOH HOH . I 6 HOH C 30 592 592 HOH HOH . I 6 HOH C 31 594 594 HOH HOH . I 6 HOH C 32 595 595 HOH HOH . I 6 HOH C 33 596 596 HOH HOH . I 6 HOH C 34 598 598 HOH HOH . I 6 HOH C 35 603 603 HOH HOH . I 6 HOH C 36 605 605 HOH HOH . I 6 HOH C 37 614 614 HOH HOH . I 6 HOH C 38 622 622 HOH HOH . I 6 HOH C 39 626 626 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N 0FG . . . F 4 32.142 1.941 44.28 1 25.46 ? N 0FG 301 C 1 HETATM 2 C CA 0FG . . . F 4 32.871 1.977 42.999 1 25.31 ? CA 0FG 301 C 1 HETATM 3 C CB 0FG . . . F 4 34.026 2.968 43.075 1 25.67 ? CB 0FG 301 C 1 HETATM 4 C CG 0FG . . . F 4 34.897 3.01 41.876 1 26.09 ? CG 0FG 301 C 1 HETATM 5 C CD1 0FG . . . F 4 36.042 3.911 42.309 1 26.32 ? CD1 0FG 301 C 1 HETATM 6 C CD2 0FG . . . F 4 35.419 1.598 41.596 1 26.29 ? CD2 0FG 301 C 1 HETATM 7 C C 0FG . . . F 4 31.939 2.333 41.842 1 25.21 ? C 0FG 301 C 1 HETATM 8 O O 0FG . . . F 4 31.021 3.131 42 1 24.99 ? O 0FG 301 C 1 HETATM 9 N N1 0FG . . . F 4 32.242 1.809 40.663 1 25.27 ? N1 0FG 301 C 1 HETATM 10 C CA1 0FG . . . F 4 31.427 2.087 39.47 1 25.18 ? CA1 0FG 301 C 1 HETATM 11 C C1 0FG . . . F 4 29.938 1.771 39.647 1 24.99 ? C1 0FG 301 C 1 HETATM 12 O O1 0FG . . . F 4 29.586 0.76 40.206 1 25.14 ? O1 0FG 301 C 1 HETATM 13 C CB1 0FG . . . F 4 31.986 1.377 38.239 1 25.93 ? CB1 0FG 301 C 1 HETATM 14 C CG1 0FG . . . F 4 33.252 2.003 37.741 1 26.39 ? CG1 0FG 301 C 1 HETATM 15 C CD11 0FG . . . F 4 33.42 3.379 37.814 1 26.62 ? CD11 0FG 301 C 1 HETATM 16 C CD21 0FG . . . F 4 34.254 1.236 37.18 1 26.58 ? CD21 0FG 301 C 1 HETATM 17 C CE1 0FG . . . F 4 34.551 3.981 37.305 1 27.14 ? CE1 0FG 301 C 1 HETATM 18 C CE2 0FG . . . F 4 35.401 1.831 36.657 1 26.93 ? CE2 0FG 301 C 1 HETATM 19 C CZ 0FG . . . F 4 35.564 3.221 36.706 1 27.12 ? CZ 0FG 301 C 1 HETATM 20 C C11 0FG . . . F 4 27.26 3.113 40.575 1 23.77 ? C11 0FG 301 C 1 HETATM 21 C C2 0FG . . . F 4 26.796 4.43 40.689 1 23.33 ? C2 0FG 301 C 1 HETATM 22 C C3 0FG . . . F 4 26.434 4.952 41.901 1 23.22 ? C3 0FG 301 C 1 HETATM 23 C C4 0FG . . . F 4 26.528 4.177 43.039 1 23.45 ? C4 0FG 301 C 1 HETATM 24 C C5 0FG . . . F 4 26.99 2.87 42.98 1 23.5 ? C5 0FG 301 C 1 HETATM 25 C C6 0FG . . . F 4 27.354 2.335 41.744 1 23.5 ? C6 0FG 301 C 1 HETATM 26 C C7 0FG . . . F 4 27.635 2.537 39.213 1 24.07 ? C7 0FG 301 C 1 HETATM 27 N N2 0FG . . . F 4 29.088 2.648 39.127 1 24.71 ? N2 0FG 301 C 1 HETATM 28 F F 0FG . . . F 4 26.144 4.716 44.2 1 23.76 ? F 0FG 301 C 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #