data_1AFS # _model_server_result.job_id T_3P9LJa8XhhYk4eFOOoQw _model_server_result.datetime_utc '2024-11-24 00:55:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1afs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":324}' # _entry.id 1AFS # _exptl.entry_id 1AFS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1AFS _cell.length_a 96.4 _cell.length_b 157.1 _cell.length_c 49 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AFS _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 237 n n PA O2A NAP sing 238 n n PA O5B NAP sing 239 n n PA O3 NAP sing 240 n n O2A HOA2 NAP sing 241 n n O5B C5B NAP sing 242 n n C5B C4B NAP sing 243 n n C5B H51A NAP sing 244 n n C5B H52A NAP sing 245 n n C4B O4B NAP sing 246 n n C4B C3B NAP sing 247 n n C4B H4B NAP sing 248 n n O4B C1B NAP sing 249 n n C3B O3B NAP sing 250 n n C3B C2B NAP sing 251 n n C3B H3B NAP sing 252 n n O3B HO3A NAP sing 253 n n C2B O2B NAP sing 254 n n C2B C1B NAP sing 255 n n C2B H2B NAP sing 256 n n O2B P2B NAP sing 257 n n C1B N9A NAP sing 258 n n C1B H1B NAP sing 259 n n N9A C8A NAP sing 260 n y N9A C4A NAP sing 261 n y C8A N7A NAP doub 262 n y C8A H8A NAP sing 263 n n N7A C5A NAP sing 264 n y C5A C6A NAP sing 265 n y C5A C4A NAP doub 266 n y C6A N6A NAP sing 267 n n C6A N1A NAP doub 268 n y N6A H61A NAP sing 269 n n N6A H62A NAP sing 270 n n N1A C2A NAP sing 271 n y C2A N3A NAP doub 272 n y C2A H2A NAP sing 273 n n N3A C4A NAP sing 274 n y O3 PN NAP sing 275 n n PN O1N NAP doub 276 n n PN O2N NAP sing 277 n n PN O5D NAP sing 278 n n O5D C5D NAP sing 279 n n C5D C4D NAP sing 280 n n C5D H51N NAP sing 281 n n C5D H52N NAP sing 282 n n C4D O4D NAP sing 283 n n C4D C3D NAP sing 284 n n C4D H4D NAP sing 285 n n O4D C1D NAP sing 286 n n C3D O3D NAP sing 287 n n C3D C2D NAP sing 288 n n C3D H3D NAP sing 289 n n O3D HO3N NAP sing 290 n n C2D O2D NAP sing 291 n n C2D C1D NAP sing 292 n n C2D H2D NAP sing 293 n n O2D HO2N NAP sing 294 n n C1D N1N NAP sing 295 n n C1D H1D NAP sing 296 n n N1N C2N NAP sing 297 n y N1N C6N NAP doub 298 n y C2N C3N NAP doub 299 n y C2N H2N NAP sing 300 n n C3N C7N NAP sing 301 n n C3N C4N NAP sing 302 n y C7N O7N NAP doub 303 n n C7N N7N NAP sing 304 n n N7N H71N NAP sing 305 n n N7N H72N NAP sing 306 n n C4N C5N NAP doub 307 n y C4N H4N NAP sing 308 n n C5N C6N NAP sing 309 n y C5N H5N NAP sing 310 n n C6N H6N NAP sing 311 n n P2B O1X NAP doub 312 n n P2B O2X NAP sing 313 n n P2B O3X NAP sing 314 n n O2X HOP2 NAP sing 315 n n O3X HOP3 NAP sing 316 n n # _atom_sites.entry_id 1AFS _atom_sites.fract_transf_matrix[1][1] 0.010373 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006365 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020408 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 324 320 NAP NAP . D 3 TES A 1 325 321 TES TES . E 2 NAP B 1 324 320 NAP NAP . F 3 TES B 1 325 321 TES TES . G 4 HOH A 1 326 322 HOH HOH . G 4 HOH A 2 327 323 HOH HOH . G 4 HOH A 3 328 324 HOH HOH . G 4 HOH A 4 329 325 HOH HOH . G 4 HOH A 5 330 326 HOH HOH . G 4 HOH A 6 331 327 HOH HOH . G 4 HOH A 7 332 328 HOH HOH . G 4 HOH A 8 333 329 HOH HOH . G 4 HOH A 9 334 330 HOH HOH . G 4 HOH A 10 335 331 HOH HOH . G 4 HOH A 11 336 332 HOH HOH . G 4 HOH A 12 337 333 HOH HOH . G 4 HOH A 13 338 334 HOH HOH . G 4 HOH A 14 339 335 HOH HOH . G 4 HOH A 15 340 336 HOH HOH . G 4 HOH A 16 341 337 HOH HOH . G 4 HOH A 17 342 338 HOH HOH . G 4 HOH A 18 343 339 HOH HOH . G 4 HOH A 19 344 340 HOH HOH . G 4 HOH A 20 345 341 HOH HOH . G 4 HOH A 21 346 342 HOH HOH . G 4 HOH A 22 347 343 HOH HOH . G 4 HOH A 23 348 344 HOH HOH . G 4 HOH A 24 349 345 HOH HOH . G 4 HOH A 25 350 346 HOH HOH . G 4 HOH A 26 351 348 HOH HOH . G 4 HOH A 27 352 349 HOH HOH . H 4 HOH B 1 326 347 HOH HOH . H 4 HOH B 2 327 322 HOH HOH . H 4 HOH B 3 328 323 HOH HOH . H 4 HOH B 4 329 324 HOH HOH . H 4 HOH B 5 330 325 HOH HOH . H 4 HOH B 6 331 326 HOH HOH . H 4 HOH B 7 332 327 HOH HOH . H 4 HOH B 8 333 328 HOH HOH . H 4 HOH B 9 334 329 HOH HOH . H 4 HOH B 10 335 330 HOH HOH . H 4 HOH B 11 336 331 HOH HOH . H 4 HOH B 12 337 332 HOH HOH . H 4 HOH B 13 338 333 HOH HOH . H 4 HOH B 14 339 334 HOH HOH . H 4 HOH B 15 340 335 HOH HOH . H 4 HOH B 16 341 336 HOH HOH . H 4 HOH B 17 342 337 HOH HOH . H 4 HOH B 18 343 338 HOH HOH . H 4 HOH B 19 344 339 HOH HOH . H 4 HOH B 20 345 340 HOH HOH . H 4 HOH B 21 346 341 HOH HOH . H 4 HOH B 22 347 342 HOH HOH . H 4 HOH B 23 348 343 HOH HOH . H 4 HOH B 24 349 344 HOH HOH . H 4 HOH B 25 350 345 HOH HOH . H 4 HOH B 26 351 346 HOH HOH . H 4 HOH B 27 352 347 HOH HOH . H 4 HOH B 28 353 348 HOH HOH . H 4 HOH B 29 354 349 HOH HOH . H 4 HOH B 30 355 350 HOH HOH . H 4 HOH B 31 356 351 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 2 -32.401 18.961 -3.562 1 30.11 ? PA NAP 324 A 1 HETATM 2 O O1A NAP . . . C 2 -32.715 19.547 -2.238 1 30.65 ? O1A NAP 324 A 1 HETATM 3 O O2A NAP . . . C 2 -31.895 19.863 -4.622 1 32.59 ? O2A NAP 324 A 1 HETATM 4 O O5B NAP . . . C 2 -33.741 18.258 -4.093 1 32.69 ? O5B NAP 324 A 1 HETATM 5 C C5B NAP . . . C 2 -33.836 17.751 -5.426 1 31.71 ? C5B NAP 324 A 1 HETATM 6 C C4B NAP . . . C 2 -35.302 17.427 -5.562 1 32.57 ? C4B NAP 324 A 1 HETATM 7 O O4B NAP . . . C 2 -36.056 18.652 -5.573 1 29.69 ? O4B NAP 324 A 1 HETATM 8 C C3B NAP . . . C 2 -35.536 16.697 -6.862 1 33.29 ? C3B NAP 324 A 1 HETATM 9 O O3B NAP . . . C 2 -36.149 15.444 -6.558 1 40.48 ? O3B NAP 324 A 1 HETATM 10 C C2B NAP . . . C 2 -36.46 17.597 -7.666 1 34.03 ? C2B NAP 324 A 1 HETATM 11 O O2B NAP . . . C 2 -37.528 16.835 -8.266 1 29.26 ? O2B NAP 324 A 1 HETATM 12 C C1B NAP . . . C 2 -37.01 18.574 -6.64 1 31.3 ? C1B NAP 324 A 1 HETATM 13 N N9A NAP . . . C 2 -37.274 19.91 -7.237 1 31.7 ? N9A NAP 324 A 1 HETATM 14 C C8A NAP . . . C 2 -36.462 20.616 -8.03 1 32.91 ? C8A NAP 324 A 1 HETATM 15 N N7A NAP . . . C 2 -37.074 21.738 -8.412 1 32.23 ? N7A NAP 324 A 1 HETATM 16 C C5A NAP . . . C 2 -38.279 21.75 -7.85 1 30.44 ? C5A NAP 324 A 1 HETATM 17 C C6A NAP . . . C 2 -39.355 22.645 -7.849 1 30.03 ? C6A NAP 324 A 1 HETATM 18 N N6A NAP . . . C 2 -39.331 23.819 -8.466 1 33.92 ? N6A NAP 324 A 1 HETATM 19 N N1A NAP . . . C 2 -40.461 22.329 -7.141 1 31.63 ? N1A NAP 324 A 1 HETATM 20 C C2A NAP . . . C 2 -40.539 21.197 -6.459 1 31.56 ? C2A NAP 324 A 1 HETATM 21 N N3A NAP . . . C 2 -39.543 20.329 -6.438 1 30.71 ? N3A NAP 324 A 1 HETATM 22 C C4A NAP . . . C 2 -38.413 20.584 -7.112 1 30.33 ? C4A NAP 324 A 1 HETATM 23 O O3 NAP . . . C 2 -31.402 17.718 -3.3 1 26.62 ? O3 NAP 324 A 1 HETATM 24 P PN NAP . . . C 2 -30.518 16.619 -4.068 1 22.86 ? PN NAP 324 A 1 HETATM 25 O O1N NAP . . . C 2 -31.074 16.345 -5.409 1 31.27 ? O1N NAP 324 A 1 HETATM 26 O O2N NAP . . . C 2 -30.338 15.484 -3.145 1 33.61 ? O2N NAP 324 A 1 HETATM 27 O O5D NAP . . . C 2 -29.095 17.355 -4.209 1 28.12 ? O5D NAP 324 A 1 HETATM 28 C C5D NAP . . . C 2 -28.857 18.368 -5.199 1 22.46 ? C5D NAP 324 A 1 HETATM 29 C C4D NAP . . . C 2 -27.368 18.51 -5.473 1 16.79 ? C4D NAP 324 A 1 HETATM 30 O O4D NAP . . . C 2 -26.611 18.898 -4.313 1 17.5 ? O4D NAP 324 A 1 HETATM 31 C C3D NAP . . . C 2 -26.751 17.205 -5.912 1 17.33 ? C3D NAP 324 A 1 HETATM 32 O O3D NAP . . . C 2 -27.01 16.871 -7.279 1 18.83 ? O3D NAP 324 A 1 HETATM 33 C C2D NAP . . . C 2 -25.281 17.491 -5.707 1 9.22 ? C2D NAP 324 A 1 HETATM 34 O O2D NAP . . . C 2 -24.773 18.161 -6.855 1 8.6 ? O2D NAP 324 A 1 HETATM 35 C C1D NAP . . . C 2 -25.285 18.354 -4.468 1 14.05 ? C1D NAP 324 A 1 HETATM 36 N N1N NAP . . . C 2 -24.981 17.509 -3.291 1 17.27 ? N1N NAP 324 A 1 HETATM 37 C C2N NAP . . . C 2 -23.702 17.529 -2.717 1 15.48 ? C2N NAP 324 A 1 HETATM 38 C C3N NAP . . . C 2 -23.427 16.745 -1.602 1 15.25 ? C3N NAP 324 A 1 HETATM 39 C C7N NAP . . . C 2 -22.057 16.798 -0.928 1 13.34 ? C7N NAP 324 A 1 HETATM 40 O O7N NAP . . . C 2 -21.743 15.987 -0.063 1 16 ? O7N NAP 324 A 1 HETATM 41 N N7N NAP . . . C 2 -21.259 17.77 -1.34 1 11.6 ? N7N NAP 324 A 1 HETATM 42 C C4N NAP . . . C 2 -24.42 15.928 -1.07 1 15.51 ? C4N NAP 324 A 1 HETATM 43 C C5N NAP . . . C 2 -25.687 15.896 -1.638 1 18.85 ? C5N NAP 324 A 1 HETATM 44 C C6N NAP . . . C 2 -25.972 16.689 -2.742 1 16.6 ? C6N NAP 324 A 1 HETATM 45 P P2B NAP . . . C 2 -37.695 16.719 -9.859 1 33.49 ? P2B NAP 324 A 1 HETATM 46 O O1X NAP . . . C 2 -36.437 16.209 -10.448 1 34.88 ? O1X NAP 324 A 1 HETATM 47 O O2X NAP . . . C 2 -38.948 15.983 -10.115 1 41.99 ? O2X NAP 324 A 1 HETATM 48 O O3X NAP . . . C 2 -37.908 18.243 -10.326 1 31.41 ? O3X NAP 324 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #