data_1AFS
#
_model_server_result.job_id            VA9p3G_5AZjbS-NZitWysQ 
_model_server_result.datetime_utc      '2024-10-13 08:16:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1afs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":324}' 
#
_entry.id    1AFS 
#
_exptl.entry_id    1AFS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1AFS 
_cell.length_a            96.4 
_cell.length_b            157.1 
_cell.length_c            49 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1AFS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 237 n n 
PA O2A NAP sing 238 n n 
PA O5B NAP sing 239 n n 
PA O3 NAP sing 240 n n 
O2A HOA2 NAP sing 241 n n 
O5B C5B NAP sing 242 n n 
C5B C4B NAP sing 243 n n 
C5B H51A NAP sing 244 n n 
C5B H52A NAP sing 245 n n 
C4B O4B NAP sing 246 n n 
C4B C3B NAP sing 247 n n 
C4B H4B NAP sing 248 n n 
O4B C1B NAP sing 249 n n 
C3B O3B NAP sing 250 n n 
C3B C2B NAP sing 251 n n 
C3B H3B NAP sing 252 n n 
O3B HO3A NAP sing 253 n n 
C2B O2B NAP sing 254 n n 
C2B C1B NAP sing 255 n n 
C2B H2B NAP sing 256 n n 
O2B P2B NAP sing 257 n n 
C1B N9A NAP sing 258 n n 
C1B H1B NAP sing 259 n n 
N9A C8A NAP sing 260 n y 
N9A C4A NAP sing 261 n y 
C8A N7A NAP doub 262 n y 
C8A H8A NAP sing 263 n n 
N7A C5A NAP sing 264 n y 
C5A C6A NAP sing 265 n y 
C5A C4A NAP doub 266 n y 
C6A N6A NAP sing 267 n n 
C6A N1A NAP doub 268 n y 
N6A H61A NAP sing 269 n n 
N6A H62A NAP sing 270 n n 
N1A C2A NAP sing 271 n y 
C2A N3A NAP doub 272 n y 
C2A H2A NAP sing 273 n n 
N3A C4A NAP sing 274 n y 
O3 PN NAP sing 275 n n 
PN O1N NAP doub 276 n n 
PN O2N NAP sing 277 n n 
PN O5D NAP sing 278 n n 
O5D C5D NAP sing 279 n n 
C5D C4D NAP sing 280 n n 
C5D H51N NAP sing 281 n n 
C5D H52N NAP sing 282 n n 
C4D O4D NAP sing 283 n n 
C4D C3D NAP sing 284 n n 
C4D H4D NAP sing 285 n n 
O4D C1D NAP sing 286 n n 
C3D O3D NAP sing 287 n n 
C3D C2D NAP sing 288 n n 
C3D H3D NAP sing 289 n n 
O3D HO3N NAP sing 290 n n 
C2D O2D NAP sing 291 n n 
C2D C1D NAP sing 292 n n 
C2D H2D NAP sing 293 n n 
O2D HO2N NAP sing 294 n n 
C1D N1N NAP sing 295 n n 
C1D H1D NAP sing 296 n n 
N1N C2N NAP sing 297 n y 
N1N C6N NAP doub 298 n y 
C2N C3N NAP doub 299 n y 
C2N H2N NAP sing 300 n n 
C3N C7N NAP sing 301 n n 
C3N C4N NAP sing 302 n y 
C7N O7N NAP doub 303 n n 
C7N N7N NAP sing 304 n n 
N7N H71N NAP sing 305 n n 
N7N H72N NAP sing 306 n n 
C4N C5N NAP doub 307 n y 
C4N H4N NAP sing 308 n n 
C5N C6N NAP sing 309 n y 
C5N H5N NAP sing 310 n n 
C6N H6N NAP sing 311 n n 
P2B O1X NAP doub 312 n n 
P2B O2X NAP sing 313 n n 
P2B O3X NAP sing 314 n n 
O2X HOP2 NAP sing 315 n n 
O3X HOP3 NAP sing 316 n n 
#
_atom_sites.entry_id                     1AFS 
_atom_sites.fract_transf_matrix[1][1]    0.010373 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006365 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020408 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAP A 1 324 320 NAP NAP . 
D 3 TES A 1 325 321 TES TES . 
E 2 NAP B 1 324 320 NAP NAP . 
F 3 TES B 1 325 321 TES TES . 
G 4 HOH A 1 326 322 HOH HOH . 
G 4 HOH A 2 327 323 HOH HOH . 
G 4 HOH A 3 328 324 HOH HOH . 
G 4 HOH A 4 329 325 HOH HOH . 
G 4 HOH A 5 330 326 HOH HOH . 
G 4 HOH A 6 331 327 HOH HOH . 
G 4 HOH A 7 332 328 HOH HOH . 
G 4 HOH A 8 333 329 HOH HOH . 
G 4 HOH A 9 334 330 HOH HOH . 
G 4 HOH A 10 335 331 HOH HOH . 
G 4 HOH A 11 336 332 HOH HOH . 
G 4 HOH A 12 337 333 HOH HOH . 
G 4 HOH A 13 338 334 HOH HOH . 
G 4 HOH A 14 339 335 HOH HOH . 
G 4 HOH A 15 340 336 HOH HOH . 
G 4 HOH A 16 341 337 HOH HOH . 
G 4 HOH A 17 342 338 HOH HOH . 
G 4 HOH A 18 343 339 HOH HOH . 
G 4 HOH A 19 344 340 HOH HOH . 
G 4 HOH A 20 345 341 HOH HOH . 
G 4 HOH A 21 346 342 HOH HOH . 
G 4 HOH A 22 347 343 HOH HOH . 
G 4 HOH A 23 348 344 HOH HOH . 
G 4 HOH A 24 349 345 HOH HOH . 
G 4 HOH A 25 350 346 HOH HOH . 
G 4 HOH A 26 351 348 HOH HOH . 
G 4 HOH A 27 352 349 HOH HOH . 
H 4 HOH B 1 326 347 HOH HOH . 
H 4 HOH B 2 327 322 HOH HOH . 
H 4 HOH B 3 328 323 HOH HOH . 
H 4 HOH B 4 329 324 HOH HOH . 
H 4 HOH B 5 330 325 HOH HOH . 
H 4 HOH B 6 331 326 HOH HOH . 
H 4 HOH B 7 332 327 HOH HOH . 
H 4 HOH B 8 333 328 HOH HOH . 
H 4 HOH B 9 334 329 HOH HOH . 
H 4 HOH B 10 335 330 HOH HOH . 
H 4 HOH B 11 336 331 HOH HOH . 
H 4 HOH B 12 337 332 HOH HOH . 
H 4 HOH B 13 338 333 HOH HOH . 
H 4 HOH B 14 339 334 HOH HOH . 
H 4 HOH B 15 340 335 HOH HOH . 
H 4 HOH B 16 341 336 HOH HOH . 
H 4 HOH B 17 342 337 HOH HOH . 
H 4 HOH B 18 343 338 HOH HOH . 
H 4 HOH B 19 344 339 HOH HOH . 
H 4 HOH B 20 345 340 HOH HOH . 
H 4 HOH B 21 346 341 HOH HOH . 
H 4 HOH B 22 347 342 HOH HOH . 
H 4 HOH B 23 348 343 HOH HOH . 
H 4 HOH B 24 349 344 HOH HOH . 
H 4 HOH B 25 350 345 HOH HOH . 
H 4 HOH B 26 351 346 HOH HOH . 
H 4 HOH B 27 352 347 HOH HOH . 
H 4 HOH B 28 353 348 HOH HOH . 
H 4 HOH B 29 354 349 HOH HOH . 
H 4 HOH B 30 355 350 HOH HOH . 
H 4 HOH B 31 356 351 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . E 2 -29.587 59.831 -16.253 1 24.25 ? PA NAP 324 B 1 
HETATM 2 O O1A NAP . . . E 2 -30.271 59.436 -17.501 1 21.14 ? O1A NAP 324 B 1 
HETATM 3 O O2A NAP . . . E 2 -29.102 58.753 -15.361 1 16.23 ? O2A NAP 324 B 1 
HETATM 4 O O5B NAP . . . E 2 -30.607 60.758 -15.435 1 19.09 ? O5B NAP 324 B 1 
HETATM 5 C C5B NAP . . . E 2 -30.32 61.164 -14.097 1 19.62 ? C5B NAP 324 B 1 
HETATM 6 C C4B NAP . . . E 2 -31.619 61.775 -13.647 1 19.97 ? C4B NAP 324 B 1 
HETATM 7 O O4B NAP . . . E 2 -32.617 60.752 -13.527 1 19.96 ? O4B NAP 324 B 1 
HETATM 8 C C3B NAP . . . E 2 -31.432 62.424 -12.299 1 20.92 ? C3B NAP 324 B 1 
HETATM 9 O O3B NAP . . . E 2 -31.797 63.799 -12.427 1 33.15 ? O3B NAP 324 B 1 
HETATM 10 C C2B NAP . . . E 2 -32.356 61.671 -11.351 1 18.91 ? C2B NAP 324 B 1 
HETATM 11 O O2B NAP . . . E 2 -33.09 62.578 -10.519 1 17 ? O2B NAP 324 B 1 
HETATM 12 C C1B NAP . . . E 2 -33.3 60.931 -12.273 1 18.8 ? C1B NAP 324 B 1 
HETATM 13 N N9A NAP . . . E 2 -33.733 59.646 -11.673 1 22.12 ? N9A NAP 324 B 1 
HETATM 14 C C8A NAP . . . E 2 -32.96 58.723 -11.092 1 24.37 ? C8A NAP 324 B 1 
HETATM 15 N N7A NAP . . . E 2 -33.715 57.729 -10.631 1 21.53 ? N7A NAP 324 B 1 
HETATM 16 C C5A NAP . . . E 2 -34.98 58.013 -10.933 1 23.41 ? C5A NAP 324 B 1 
HETATM 17 C C6A NAP . . . E 2 -36.209 57.361 -10.745 1 23.74 ? C6A NAP 324 B 1 
HETATM 18 N N6A NAP . . . E 2 -36.332 56.154 -10.206 1 23.65 ? N6A NAP 324 B 1 
HETATM 19 N N1A NAP . . . E 2 -37.331 57.964 -11.198 1 24.84 ? N1A NAP 324 B 1 
HETATM 20 C C2A NAP . . . E 2 -37.286 59.14 -11.809 1 21.65 ? C2A NAP 324 B 1 
HETATM 21 N N3A NAP . . . E 2 -36.148 59.781 -12.01 1 16.26 ? N3A NAP 324 B 1 
HETATM 22 C C4A NAP . . . E 2 -34.994 59.238 -11.589 1 22.96 ? C4A NAP 324 B 1 
HETATM 23 O O3 NAP . . . E 2 -28.396 60.865 -16.665 1 25.69 ? O3 NAP 324 B 1 
HETATM 24 P PN NAP . . . E 2 -27.149 61.688 -16.045 1 18.12 ? PN NAP 324 B 1 
HETATM 25 O O1N NAP . . . E 2 -27.371 61.96 -14.623 1 18.11 ? O1N NAP 324 B 1 
HETATM 26 O O2N NAP . . . E 2 -26.894 62.822 -16.945 1 29.43 ? O2N NAP 324 B 1 
HETATM 27 O O5D NAP . . . E 2 -25.932 60.658 -16.227 1 20.6 ? O5D NAP 324 B 1 
HETATM 28 C C5D NAP . . . E 2 -25.739 59.543 -15.348 1 14.2 ? C5D NAP 324 B 1 
HETATM 29 C C4D NAP . . . E 2 -24.289 59.075 -15.394 1 8.77 ? C4D NAP 324 B 1 
HETATM 30 O O4D NAP . . . E 2 -23.879 58.622 -16.696 1 10.88 ? O4D NAP 324 B 1 
HETATM 31 C C3D NAP . . . E 2 -23.332 60.198 -15.058 1 6.57 ? C3D NAP 324 B 1 
HETATM 32 O O3D NAP . . . E 2 -23.239 60.474 -13.663 1 7.92 ? O3D NAP 324 B 1 
HETATM 33 C C2D NAP . . . E 2 -22.027 59.623 -15.56 1 9.35 ? C2D NAP 324 B 1 
HETATM 34 O O2D NAP . . . E 2 -21.463 58.765 -14.571 1 8.49 ? O2D NAP 324 B 1 
HETATM 35 C C1D NAP . . . E 2 -22.461 58.87 -16.804 1 12.32 ? C1D NAP 324 B 1 
HETATM 36 N N1N NAP . . . E 2 -22.211 59.718 -17.988 1 10.18 ? N1N NAP 324 B 1 
HETATM 37 C C2N NAP . . . E 2 -21.103 59.473 -18.809 1 11.57 ? C2N NAP 324 B 1 
HETATM 38 C C3N NAP . . . E 2 -20.885 60.266 -19.931 1 11.55 ? C3N NAP 324 B 1 
HETATM 39 C C7N NAP . . . E 2 -19.718 59.987 -20.873 1 13.73 ? C7N NAP 324 B 1 
HETATM 40 O O7N NAP . . . E 2 -19.416 60.789 -21.753 1 19.52 ? O7N NAP 324 B 1 
HETATM 41 N N7N NAP . . . E 2 -19.082 58.842 -20.657 1 14.2 ? N7N NAP 324 B 1 
HETATM 42 C C4N NAP . . . E 2 -21.754 61.306 -20.219 1 13.39 ? C4N NAP 324 B 1 
HETATM 43 C C5N NAP . . . E 2 -22.849 61.557 -19.399 1 16.69 ? C5N NAP 324 B 1 
HETATM 44 C C6N NAP . . . E 2 -23.086 60.764 -18.288 1 7.68 ? C6N NAP 324 B 1 
HETATM 45 P P2B NAP . . . E 2 -32.924 62.616 -8.928 1 17.28 ? P2B NAP 324 B 1 
HETATM 46 O O1X NAP . . . E 2 -31.501 62.795 -8.588 1 21.21 ? O1X NAP 324 B 1 
HETATM 47 O O2X NAP . . . E 2 -33.908 63.576 -8.39 1 19.29 ? O2X NAP 324 B 1 
HETATM 48 O O3X NAP . . . E 2 -33.377 61.14 -8.491 1 16.96 ? O3X NAP 324 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           48 
#