data_1AFS # _model_server_result.job_id PmyDZyRkH_egETH-1yWw0w _model_server_result.datetime_utc '2024-10-13 08:18:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1afs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":325}' # _entry.id 1AFS # _exptl.entry_id 1AFS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 288.424 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TESTOSTERONE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1AFS _cell.length_a 96.4 _cell.length_b 157.1 _cell.length_c 49 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AFS _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C19 H28 O2' _chem_comp.formula_weight 288.424 _chem_comp.id TES _chem_comp.mon_nstd_flag . _chem_comp.name TESTOSTERONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 TES sing 370 n n C1 C10 TES sing 371 n n C1 H11 TES sing 372 n n C1 H12 TES sing 373 n n C2 C3 TES sing 374 n n C2 H21 TES sing 375 n n C2 H22 TES sing 376 n n C3 O3 TES doub 377 n n C3 C4 TES sing 378 n n C4 C5 TES doub 379 n n C4 H4 TES sing 380 n n C5 C6 TES sing 381 n n C5 C10 TES sing 382 n n C6 C7 TES sing 383 n n C6 H61 TES sing 384 n n C6 H62 TES sing 385 n n C7 C8 TES sing 386 n n C7 H71 TES sing 387 n n C7 H72 TES sing 388 n n C8 C9 TES sing 389 n n C8 C14 TES sing 390 n n C8 H8 TES sing 391 n n C9 C10 TES sing 392 n n C9 C11 TES sing 393 n n C9 H9 TES sing 394 n n C10 C19 TES sing 395 n n C11 C12 TES sing 396 n n C11 H111 TES sing 397 n n C11 H112 TES sing 398 n n C12 C13 TES sing 399 n n C12 H121 TES sing 400 n n C12 H122 TES sing 401 n n C13 C14 TES sing 402 n n C13 C17 TES sing 403 n n C13 C18 TES sing 404 n n C14 C15 TES sing 405 n n C14 H14 TES sing 406 n n C15 C16 TES sing 407 n n C15 H151 TES sing 408 n n C15 H152 TES sing 409 n n C16 C17 TES sing 410 n n C16 H161 TES sing 411 n n C16 H162 TES sing 412 n n C17 O17 TES sing 413 n n C17 H17 TES sing 414 n n O17 HO7 TES sing 415 n n C18 H181 TES sing 416 n n C18 H182 TES sing 417 n n C18 H183 TES sing 418 n n C19 H191 TES sing 419 n n C19 H192 TES sing 420 n n C19 H193 TES sing 421 n n # _atom_sites.entry_id 1AFS _atom_sites.fract_transf_matrix[1][1] 0.010373 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006365 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020408 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 324 320 NAP NAP . D 3 TES A 1 325 321 TES TES . E 2 NAP B 1 324 320 NAP NAP . F 3 TES B 1 325 321 TES TES . G 4 HOH A 1 326 322 HOH HOH . G 4 HOH A 2 327 323 HOH HOH . G 4 HOH A 3 328 324 HOH HOH . G 4 HOH A 4 329 325 HOH HOH . G 4 HOH A 5 330 326 HOH HOH . G 4 HOH A 6 331 327 HOH HOH . G 4 HOH A 7 332 328 HOH HOH . G 4 HOH A 8 333 329 HOH HOH . G 4 HOH A 9 334 330 HOH HOH . G 4 HOH A 10 335 331 HOH HOH . G 4 HOH A 11 336 332 HOH HOH . G 4 HOH A 12 337 333 HOH HOH . G 4 HOH A 13 338 334 HOH HOH . G 4 HOH A 14 339 335 HOH HOH . G 4 HOH A 15 340 336 HOH HOH . G 4 HOH A 16 341 337 HOH HOH . G 4 HOH A 17 342 338 HOH HOH . G 4 HOH A 18 343 339 HOH HOH . G 4 HOH A 19 344 340 HOH HOH . G 4 HOH A 20 345 341 HOH HOH . G 4 HOH A 21 346 342 HOH HOH . G 4 HOH A 22 347 343 HOH HOH . G 4 HOH A 23 348 344 HOH HOH . G 4 HOH A 24 349 345 HOH HOH . G 4 HOH A 25 350 346 HOH HOH . G 4 HOH A 26 351 348 HOH HOH . G 4 HOH A 27 352 349 HOH HOH . H 4 HOH B 1 326 347 HOH HOH . H 4 HOH B 2 327 322 HOH HOH . H 4 HOH B 3 328 323 HOH HOH . H 4 HOH B 4 329 324 HOH HOH . H 4 HOH B 5 330 325 HOH HOH . H 4 HOH B 6 331 326 HOH HOH . H 4 HOH B 7 332 327 HOH HOH . H 4 HOH B 8 333 328 HOH HOH . H 4 HOH B 9 334 329 HOH HOH . H 4 HOH B 10 335 330 HOH HOH . H 4 HOH B 11 336 331 HOH HOH . H 4 HOH B 12 337 332 HOH HOH . H 4 HOH B 13 338 333 HOH HOH . H 4 HOH B 14 339 334 HOH HOH . H 4 HOH B 15 340 335 HOH HOH . H 4 HOH B 16 341 336 HOH HOH . H 4 HOH B 17 342 337 HOH HOH . H 4 HOH B 18 343 338 HOH HOH . H 4 HOH B 19 344 339 HOH HOH . H 4 HOH B 20 345 340 HOH HOH . H 4 HOH B 21 346 341 HOH HOH . H 4 HOH B 22 347 342 HOH HOH . H 4 HOH B 23 348 343 HOH HOH . H 4 HOH B 24 349 344 HOH HOH . H 4 HOH B 25 350 345 HOH HOH . H 4 HOH B 26 351 346 HOH HOH . H 4 HOH B 27 352 347 HOH HOH . H 4 HOH B 28 353 348 HOH HOH . H 4 HOH B 29 354 349 HOH HOH . H 4 HOH B 30 355 350 HOH HOH . H 4 HOH B 31 356 351 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 TES . . . D 3 -22.518 11.317 -0.948 1 30.63 ? C1 TES 325 A 1 HETATM 2 C C2 TES . . . D 3 -22.476 12.848 -1.023 1 28.75 ? C2 TES 325 A 1 HETATM 3 C C3 TES . . . D 3 -22.94 13.345 -2.343 1 29.08 ? C3 TES 325 A 1 HETATM 4 O O3 TES . . . D 3 -22.366 14.224 -2.942 1 26.61 ? O3 TES 325 A 1 HETATM 5 C C4 TES . . . D 3 -24.119 12.704 -2.879 1 31.33 ? C4 TES 325 A 1 HETATM 6 C C5 TES . . . D 3 -24.571 11.502 -2.435 1 30.77 ? C5 TES 325 A 1 HETATM 7 C C6 TES . . . D 3 -25.775 10.885 -3.088 1 31.61 ? C6 TES 325 A 1 HETATM 8 C C7 TES . . . D 3 -25.56 9.426 -3.479 1 34.8 ? C7 TES 325 A 1 HETATM 9 C C8 TES . . . D 3 -25.05 8.654 -2.257 1 38.01 ? C8 TES 325 A 1 HETATM 10 C C9 TES . . . D 3 -23.763 9.255 -1.681 1 32.96 ? C9 TES 325 A 1 HETATM 11 C C10 TES . . . D 3 -23.912 10.728 -1.268 1 32.11 ? C10 TES 325 A 1 HETATM 12 C C11 TES . . . D 3 -23.126 8.49 -0.5 1 35.54 ? C11 TES 325 A 1 HETATM 13 C C12 TES . . . D 3 -22.931 7.013 -0.874 1 40.8 ? C12 TES 325 A 1 HETATM 14 C C13 TES . . . D 3 -24.24 6.386 -1.352 1 44.71 ? C13 TES 325 A 1 HETATM 15 C C14 TES . . . D 3 -24.772 7.185 -2.549 1 43.01 ? C14 TES 325 A 1 HETATM 16 C C15 TES . . . D 3 -25.894 6.322 -3.13 1 43.73 ? C15 TES 325 A 1 HETATM 17 C C16 TES . . . D 3 -25.351 4.891 -2.963 1 46.73 ? C16 TES 325 A 1 HETATM 18 C C17 TES . . . D 3 -24.065 5.028 -2.106 1 47.71 ? C17 TES 325 A 1 HETATM 19 O O17 TES . . . D 3 -23.792 3.894 -1.271 1 55.21 ? O17 TES 325 A 1 HETATM 20 C C18 TES . . . D 3 -25.281 6.285 -0.221 1 37.85 ? C18 TES 325 A 1 HETATM 21 C C19 TES . . . D 3 -24.849 10.856 -0.05 1 29.2 ? C19 TES 325 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 21 #