data_1AG5 # _model_server_result.job_id bcbxQCTbIbnbfQ3XWJfieQ _model_server_result.datetime_utc '2024-12-19 18:50:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ag5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":11}' # _entry.id 1AG5 # _exptl.entry_id 1AG5 _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 330.289 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '8,9-DIHYDRO-9-HYDROXY-AFLATOXIN B1' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1AG5 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AG5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A N7 DG 6 A DG 6 1_555 C C8A AFN . A AFN 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.486 sing hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 DG 11 B DG 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 DG 11 B DG 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 DG 11 B DG 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 DC 2 A DC 2 1_555 B N1 DG 10 B DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N4 DC 2 A DC 2 1_555 B O6 DG 10 B DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O2 DC 2 A DC 2 1_555 B N2 DG 10 B DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N1 DA 3 A DA 3 1_555 B N3 DT 9 B DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N6 DA 3 A DA 3 1_555 B O4 DT 9 B DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N3 DT 4 A DT 4 1_555 B N1 DA 8 B DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O4 DT 4 A DT 4 1_555 B N6 DA 8 B DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N3 DC 5 A DC 5 1_555 B N1 DG 7 B DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N4 DC 5 A DC 5 1_555 B O6 DG 7 B DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A O2 DC 5 A DC 5 1_555 B N2 DG 7 B DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N1 DG 6 A DG 6 1_555 B N3 DC 5 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N2 DG 6 A DG 6 1_555 B O2 DC 5 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A O6 DG 6 A DG 6 1_555 B N4 DC 5 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N1 DA 7 A DA 7 1_555 B N3 DT 4 B DT 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N6 DA 7 A DA 7 1_555 B O4 DT 4 B DT 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N3 DT 8 A DT 8 1_555 B N1 DA 3 B DA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A O4 DT 8 A DT 8 1_555 B N6 DA 3 B DA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N3 DC 9 A DC 9 1_555 B N1 DG 2 B DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N4 DC 9 A DC 9 1_555 B O6 DG 2 B DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A O2 DC 9 A DC 9 1_555 B N2 DG 2 B DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N3 DC 10 A DC 10 1_555 B N1 DG 1 B DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N4 DC 10 A DC 10 1_555 B O6 DG 1 B DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A O2 DC 10 A DC 10 1_555 B N2 DG 1 B DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C17 H14 O7' _chem_comp.formula_weight 330.289 _chem_comp.id AFN _chem_comp.mon_nstd_flag . _chem_comp.name '8,9-DIHYDRO-9-HYDROXY-AFLATOXIN B1' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8A C9 AFN sing 1 n n C8A O7 AFN sing 2 n n C8A H8A2 AFN sing 3 n n C8A H8A AFN sing 4 n n C9 O9 AFN sing 5 n n C9 C9A AFN sing 6 n n C9 H9 AFN sing 7 n n O9 HO9 AFN sing 8 n n C9A C9B AFN sing 9 n n C9A C6A AFN sing 10 n n C9A H9A AFN sing 11 n n C9B C5A AFN doub 12 n y C9B C10 AFN sing 13 n y O7 C6A AFN sing 14 n n C6A O6A AFN sing 15 n n C6A H6A AFN sing 16 n n O6A C5A AFN sing 17 n n C5A C5B AFN sing 18 n y C5B C4B AFN doub 19 n y C5B H5B AFN sing 20 n n C4B O4 AFN sing 21 n n C4B C4A AFN sing 22 n y O4 CM AFN sing 23 n n CM HM1 AFN sing 24 n n CM HM2 AFN sing 25 n n CM HM3 AFN sing 26 n n C4A C10 AFN doub 27 n y C4A C3A AFN sing 28 n y C10 O10 AFN sing 29 n y O10 C11 AFN sing 30 n y C11 O11 AFN doub 31 n n C11 C12 AFN sing 32 n y C12 C3A AFN doub 33 n y C12 C1 AFN sing 34 n n C3A C3 AFN sing 35 n n C3 C2A AFN sing 36 n n C3 H31 AFN sing 37 n n C3 H32 AFN sing 38 n n C2A C1 AFN sing 39 n n C2A H2A1 AFN sing 40 n n C2A H2A2 AFN sing 41 n n C1 O1 AFN doub 42 n n # _atom_sites.entry_id 1AG5 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id AFN _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 11 _pdbx_nonpoly_scheme.auth_seq_num 6 _pdbx_nonpoly_scheme.pdb_mon_id AFN _pdbx_nonpoly_scheme.auth_mon_id X _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8A AFN . . . C 3 0.633 0.908 16.628 1 0.47 ? C8A AFN 11 A 1 HETATM 2 C C9 AFN . . . C 3 1.546 0.185 15.607 1 0.45 ? C9 AFN 11 A 1 HETATM 3 O O9 AFN . . . C 3 2.871 0.059 16.082 1 0.48 ? O9 AFN 11 A 1 HETATM 4 C C9A AFN . . . C 3 1.448 1.211 14.414 1 0.47 ? C9A AFN 11 A 1 HETATM 5 C C9B AFN . . . C 3 0.171 1.286 13.702 1 0.46 ? C9B AFN 11 A 1 HETATM 6 O O7 AFN . . . C 3 1.551 1.989 16.353 1 0.5 ? O7 AFN 11 A 1 HETATM 7 C C6A AFN . . . C 3 1.501 2.508 15.141 1 0.51 ? C6A AFN 11 A 1 HETATM 8 O O6A AFN . . . C 3 0.313 3.213 14.841 1 0.51 ? O6A AFN 11 A 1 HETATM 9 C C5A AFN . . . C 3 -0.416 2.424 13.971 1 0.48 ? C5A AFN 11 A 1 HETATM 10 C C5B AFN . . . C 3 -1.652 2.762 13.414 1 0.47 ? C5B AFN 11 A 1 HETATM 11 C C4B AFN . . . C 3 -2.247 1.842 12.535 1 0.45 ? C4B AFN 11 A 1 HETATM 12 O O4 AFN . . . C 3 -3.433 2.078 11.945 1 0.45 ? O4 AFN 11 A 1 HETATM 13 C CM AFN . . . C 3 -4.116 3.295 12.183 1 0.45 ? CM AFN 11 A 1 HETATM 14 C C4A AFN . . . C 3 -1.577 0.617 12.241 1 0.43 ? C4A AFN 11 A 1 HETATM 15 C C10 AFN . . . C 3 -0.362 0.353 12.842 1 0.43 ? C10 AFN 11 A 1 HETATM 16 O O10 AFN . . . C 3 0.316 -0.812 12.564 1 0.42 ? O10 AFN 11 A 1 HETATM 17 C C11 AFN . . . C 3 -0.193 -1.772 11.661 1 0.41 ? C11 AFN 11 A 1 HETATM 18 O O11 AFN . . . C 3 0.465 -2.756 11.471 1 0.4 ? O11 AFN 11 A 1 HETATM 19 C C12 AFN . . . C 3 -1.457 -1.455 11.067 1 0.4 ? C12 AFN 11 A 1 HETATM 20 C C3A AFN . . . C 3 -2.094 -0.308 11.366 1 0.41 ? C3A AFN 11 A 1 HETATM 21 C C3 AFN . . . C 3 -3.385 -0.162 10.652 1 0.41 ? C3 AFN 11 A 1 HETATM 22 C C2A AFN . . . C 3 -3.48 -1.451 9.817 1 0.4 ? C2A AFN 11 A 1 HETATM 23 C C1 AFN . . . C 3 -2.185 -2.252 10.134 1 0.4 ? C1 AFN 11 A 1 HETATM 24 O O1 AFN . . . C 3 -1.901 -3.319 9.667 1 0.39 ? O1 AFN 11 A 1 HETATM 25 H H8A AFN . . . C 3 0.774 0.512 17.634 1 0.47 ? H8A AFN 11 A 1 HETATM 26 H H9 AFN . . . C 3 1.131 -0.784 15.328 1 0.43 ? H9 AFN 11 A 1 HETATM 27 H HO9 AFN . . . C 3 3.025 0.744 16.737 1 1.08 ? HO9 AFN 11 A 1 HETATM 28 H H9A AFN . . . C 3 2.287 1.107 13.727 1 0.49 ? H9A AFN 11 A 1 HETATM 29 H H6A AFN . . . C 3 2.4 3.075 14.897 1 0.54 ? H6A AFN 11 A 1 HETATM 30 H H5B AFN . . . C 3 -2.131 3.697 13.653 1 0.49 ? H5B AFN 11 A 1 HETATM 31 H HM1 AFN . . . C 3 -4.76 3.524 11.335 1 1.1 ? HM1 AFN 11 A 1 HETATM 32 H HM2 AFN . . . C 3 -3.394 4.102 12.315 1 0.8 ? HM2 AFN 11 A 1 HETATM 33 H HM3 AFN . . . C 3 -4.722 3.201 13.084 1 1 ? HM3 AFN 11 A 1 HETATM 34 H H31 AFN . . . C 3 -4.21 -0.104 11.362 1 0.4 ? H31 AFN 11 A 1 HETATM 35 H H32 AFN . . . C 3 -3.371 0.714 10.007 1 0.44 ? H32 AFN 11 A 1 HETATM 36 H H2A1 AFN . . . C 3 -4.359 -2.025 10.112 1 0.38 ? H2A1 AFN 11 A 1 HETATM 37 H H2A2 AFN . . . C 3 -3.525 -1.213 8.756 1 0.42 ? H2A2 AFN 11 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 37 #