data_1AGN # _model_server_result.job_id sLXpkIg0DxCieFx0KxwAmQ _model_server_result.datetime_utc '2024-11-21 13:25:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1agn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"DA","auth_seq_id":402}' # _entry.id 1AGN # _exptl.entry_id 1AGN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 16 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.03 _cell.angle_gamma 90 _cell.entry_id 1AGN _cell.length_a 86.3 _cell.length_b 94.65 _cell.length_c 121.66 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AGN _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 PISA tetrameric 4 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,IA,JA 1 1 C,D,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,KA,LA 2 1 A,E,F,G,H,I,J,K,IA 3 2 D,AA,BA,CA,DA,EA,FA,GA,HA,LA 3 3 B,C,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,JA,KA 3 1 B,L,M,N,O,P,Q,R,S,T,U,JA 4 1 D,AA,BA,CA,DA,EA,FA,GA,HA,LA 4 3 A,E,F,G,H,I,J,K,IA 4 4 C,V,W,X,Y,Z,KA 4 5 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_656 x+1,y,z+1 1 0 0 0 1 0 0 0 1 65.111232 0 119.800633 3 'crystal symmetry operation' 1_455 x-1,y,z 1 0 0 0 1 0 0 0 1 -86.3 0 0 4 'crystal symmetry operation' 2_556 -x,y+1/2,-z+1 -1 0 0 0 1 0 0 0 -1 -21.188768 47.325 119.800633 5 'crystal symmetry operation' 2_657 -x+1,y+1/2,-z+2 -1 0 0 0 1 0 0 0 -1 43.922465 47.325 239.601266 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 V N N ? 2 W N N ? 2 X N N ? 2 AA N N ? 2 BA N N ? 2 CA N N ? 2 DA N N ? 2 EA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 46 A CYS 46 1_555 F ZN ZN . A ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc2 A NE2 HIS 67 A HIS 67 1_555 F ZN ZN . A ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc3 A SG CYS 97 A CYS 97 1_555 E ZN ZN . A ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc4 A SG CYS 100 A CYS 100 1_555 E ZN ZN . A ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc5 A SG CYS 103 A CYS 103 1_555 E ZN ZN . A ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc6 A SG CYS 111 A CYS 111 1_555 E ZN ZN . A ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc7 A SG CYS 173 A CYS 174 1_555 F ZN ZN . A ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc8 A NE2 HIS 270 A HIS 271 1_555 G ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.825 ? metalc ? metalc9 K N7A NAD . A NAD 377 1_555 G ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? metalc ? metalc10 B SG CYS 46 B CYS 46 1_555 M ZN ZN . B ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc11 B NE2 HIS 67 B HIS 67 1_555 M ZN ZN . B ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc12 B SG CYS 97 B CYS 97 1_555 L ZN ZN . B ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc13 B SG CYS 100 B CYS 100 1_555 L ZN ZN . B ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc14 B SG CYS 103 B CYS 103 1_555 L ZN ZN . B ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc15 B SG CYS 111 B CYS 111 1_555 L ZN ZN . B ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc16 B NE2 HIS 137 B HIS 138 1_555 O ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc17 B SG CYS 173 B CYS 174 1_555 M ZN ZN . B ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc18 B NE2 HIS 270 B HIS 271 1_555 N ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc19 B OD2 ASP 340 B ASP 341 1_555 P ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc20 B OD1 ASP 340 B ASP 341 1_555 P ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc21 M ZN ZN . B ZN 376 1_555 Q OXT ACT . B ACT 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc22 U N7A NAD . B NAD 377 1_555 N ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.862 ? metalc ? metalc23 N ZN ZN . B ZN 401 1_555 R O ACT . B ACT 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc24 P ZN ZN . B ZN 402 1_555 S OXT ACT . B ACT 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc25 P ZN ZN . B ZN 402 1_555 D OE1 GLU 99 D GLU 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc26 O ZN ZN . B ZN 403 1_555 D OE2 GLU 356 D GLU 357 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? metalc ? metalc27 O ZN ZN . B ZN 403 1_555 D OE2 GLU 359 D GLU 360 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 1.872 ? metalc ? metalc28 C SG CYS 46 C CYS 46 1_555 W ZN ZN . C ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc29 C NE2 HIS 67 C HIS 67 1_555 W ZN ZN . C ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc30 C SG CYS 97 C CYS 97 1_555 V ZN ZN . C ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc31 C SG CYS 100 C CYS 100 1_555 V ZN ZN . C ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc32 C SG CYS 103 C CYS 103 1_555 V ZN ZN . C ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc33 C SG CYS 111 C CYS 111 1_555 V ZN ZN . C ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc34 C SG CYS 173 C CYS 174 1_555 W ZN ZN . C ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc35 C NE2 HIS 270 C HIS 271 1_555 X ZN ZN . C ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc36 Z N7A NAD . C NAD 377 1_555 X ZN ZN . C ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? metalc ? metalc37 D SG CYS 46 D CYS 46 1_555 BA ZN ZN . D ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc38 D NE2 HIS 67 D HIS 67 1_555 BA ZN ZN . D ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? metalc ? metalc39 D SG CYS 97 D CYS 97 1_555 AA ZN ZN . D ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc40 D SG CYS 100 D CYS 100 1_555 AA ZN ZN . D ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc41 D SG CYS 103 D CYS 103 1_555 AA ZN ZN . D ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc42 D SG CYS 111 D CYS 111 1_555 AA ZN ZN . D ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc43 D NE2 HIS 137 D HIS 138 1_555 EA ZN ZN . D ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc44 D SG CYS 173 D CYS 174 1_555 BA ZN ZN . D ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc45 D OE2 GLU 251 D GLU 252 1_555 DA ZN ZN . D ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc46 D OE2 GLU 255 D GLU 256 1_555 DA ZN ZN . D ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? metalc ? metalc47 D OE1 GLU 255 D GLU 256 1_555 DA ZN ZN . D ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? metalc ? metalc48 D NE2 HIS 270 D HIS 271 1_555 CA ZN ZN . D ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.829 ? metalc ? metalc49 HA N7A NAD . D NAD 377 1_555 CA ZN ZN . D ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1AGN _atom_sites.fract_transf_matrix[1][1] 0.011587 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002049 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010565 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008347 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ZN A 1 375 375 ZN ZN . F 2 ZN A 1 376 376 ZN ZN . G 2 ZN A 1 401 401 ZN ZN . H 3 ACT A 1 378 378 ACT ACT . I 3 ACT A 1 501 501 ACT ACT . J 3 ACT A 1 502 502 ACT ACT . K 4 NAD A 1 377 377 NAD NAD . L 2 ZN B 1 375 375 ZN ZN . M 2 ZN B 1 376 376 ZN ZN . N 2 ZN B 1 401 401 ZN ZN . O 2 ZN B 1 403 403 ZN ZN . P 2 ZN B 1 402 402 ZN ZN . Q 3 ACT B 1 378 378 ACT ACT . R 3 ACT B 1 501 501 ACT ACT . S 3 ACT B 1 503 503 ACT ACT . T 3 ACT B 1 502 502 ACT ACT . U 4 NAD B 1 377 377 NAD NAD . V 2 ZN C 1 375 375 ZN ZN . W 2 ZN C 1 376 376 ZN ZN . X 2 ZN C 1 401 401 ZN ZN . Y 3 ACT C 1 378 378 ACT ACT . Z 4 NAD C 1 377 377 NAD NAD . AA 2 ZN D 1 375 375 ZN ZN . BA 2 ZN D 1 376 376 ZN ZN . CA 2 ZN D 1 401 401 ZN ZN . DA 2 ZN D 1 402 402 ZN ZN . EA 2 ZN D 1 403 403 ZN ZN . FA 3 ACT D 1 378 378 ACT ACT . GA 3 ACT D 1 501 501 ACT ACT . HA 4 NAD D 1 377 377 NAD NAD . IA 5 HOH A 1 503 601 HOH HOH . JA 5 HOH B 1 504 602 HOH HOH . JA 5 HOH B 2 505 603 HOH HOH . JA 5 HOH B 3 506 602 HOH HOH . JA 5 HOH B 4 507 601 HOH HOH . KA 5 HOH C 1 402 601 HOH HOH . LA 5 HOH D 1 502 402 HOH HOH . LA 5 HOH D 2 503 403 HOH HOH . LA 5 HOH D 3 504 404 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id DA _atom_site.label_entity_id 2 _atom_site.Cartn_x 68.265 _atom_site.Cartn_y 11.244 _atom_site.Cartn_z 111.721 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 27.67 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 402 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #