data_1AGR
#
_model_server_result.job_id            ec7NFbQkHEyb6CB3BLrSug 
_model_server_result.datetime_utc      '2024-11-08 12:57:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1agr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":356}' 
#
_entry.id    1AGR 
#
_exptl.entry_id    1AGR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1AGR 
_cell.length_a            164 
_cell.length_b            97.2 
_cell.length_c            110 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1AGR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,H,M,O 1 1 
B,D,I,J,K,L,N,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 G O3B GDP . A GDP 355 1_555 F F1 ALF . A ALF 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? 
covale ? covale2 K O3B GDP . D GDP 355 1_555 J F1 ALF . D ALF 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc1 A OG SER 46 A SER 47 1_555 E MG MG . A MG 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? 
metalc ? metalc2 A NH2 ARG 177 A ARG 178 1_555 F AL ALF . A ALF 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.689 ? 
metalc ? metalc3 A OG1 THR 180 A THR 181 1_555 E MG MG . A MG 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.878 ? 
metalc ? metalc4 G O2B GDP . A GDP 355 1_555 E MG MG . A MG 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
metalc ? metalc5 G O3B GDP . A GDP 355 1_555 F AL ALF . A ALF 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
metalc ? metalc6 G O2B GDP . A GDP 355 1_555 F AL ALF . A ALF 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.581 ? 
metalc ? metalc7 E MG MG . A MG 356 1_555 F F2 ALF . A ALF 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.967 ? 
metalc ? metalc8 E MG MG . A MG 356 1_555 F F3 ALF . A ALF 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? 
metalc ? metalc9 E MG MG . A MG 356 1_555 F AL ALF . A ALF 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.297 ? 
metalc ? metalc10 E MG MG . A MG 356 1_555 M O HOH . A HOH 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
metalc ? metalc11 E MG MG . A MG 356 1_555 M O HOH . A HOH 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? 
metalc ? metalc12 F AL ALF . A ALF 357 1_555 M O HOH . A HOH 359 1_555 ? ? ? A ? ? ? ? ? ? ? ? 1.951 ? 
metalc ? metalc13 B OG SER 46 D SER 47 1_555 I MG MG . D MG 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.903 ? 
metalc ? metalc14 B NH2 ARG 177 D ARG 178 1_555 J AL ALF . D ALF 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.668 ? 
metalc ? metalc15 B OG1 THR 180 D THR 181 1_555 I MG MG . D MG 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? 
metalc ? metalc16 K O2B GDP . D GDP 355 1_555 I MG MG . D MG 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
metalc ? metalc17 K O3B GDP . D GDP 355 1_555 J AL ALF . D ALF 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? 
metalc ? metalc18 K O2B GDP . D GDP 355 1_555 J AL ALF . D ALF 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.613 ? 
metalc ? metalc19 I MG MG . D MG 356 1_555 J F3 ALF . D ALF 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? 
metalc ? metalc20 I MG MG . D MG 356 1_555 J F2 ALF . D ALF 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.956 ? 
metalc ? metalc21 I MG MG . D MG 356 1_555 J AL ALF . D ALF 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.326 ? 
metalc ? metalc22 I MG MG . D MG 356 1_555 N O HOH . D HOH 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
metalc ? metalc23 I MG MG . D MG 356 1_555 N O HOH . D HOH 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
metalc ? metalc24 J AL ALF . D ALF 357 1_555 N O HOH . D HOH 360 1_555 ? ? ? D ? ? ? ? ? ? ? ? 2.005 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1AGR 
_atom_sites.fract_transf_matrix[1][1]    0.006098 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010288 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009091 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 MG A 1 356 356 MG MG . 
F 4 ALF A 1 357 357 ALF ALF . 
G 5 GDP A 1 355 355 GDP GDP . 
H 6 CIT A 1 358 358 CIT CIT . 
I 3 MG D 1 356 356 MG MG . 
J 4 ALF D 1 357 357 ALF ALF . 
K 5 GDP D 1 355 355 GDP GDP . 
L 6 CIT D 1 358 358 CIT CIT . 
M 7 HOH A 1 359 357 HOH HOH A 
M 7 HOH A 2 360 402 HOH HOH . 
M 7 HOH A 3 361 403 HOH HOH . 
M 7 HOH A 4 362 406 HOH HOH . 
M 7 HOH A 5 363 409 HOH HOH . 
M 7 HOH A 6 364 410 HOH HOH . 
M 7 HOH A 7 365 412 HOH HOH . 
M 7 HOH A 8 366 414 HOH HOH . 
M 7 HOH A 9 367 415 HOH HOH . 
M 7 HOH A 10 368 421 HOH HOH . 
M 7 HOH A 11 369 424 HOH HOH . 
M 7 HOH A 12 370 436 HOH HOH . 
M 7 HOH A 13 371 438 HOH HOH . 
M 7 HOH A 14 372 442 HOH HOH . 
M 7 HOH A 15 373 454 HOH HOH . 
M 7 HOH A 16 374 455 HOH HOH . 
M 7 HOH A 17 375 457 HOH HOH . 
M 7 HOH A 18 376 460 HOH HOH . 
M 7 HOH A 19 377 461 HOH HOH . 
M 7 HOH A 20 378 470 HOH HOH . 
M 7 HOH A 21 379 471 HOH HOH . 
M 7 HOH A 22 380 474 HOH HOH . 
M 7 HOH A 23 381 476 HOH HOH . 
M 7 HOH A 24 382 480 HOH HOH . 
M 7 HOH A 25 383 485 HOH HOH . 
M 7 HOH A 26 384 434 HOH HOH . 
N 7 HOH D 1 359 434 HOH HOH . 
N 7 HOH D 2 360 357 HOH HOH D 
N 7 HOH D 3 361 402 HOH HOH . 
N 7 HOH D 4 362 403 HOH HOH . 
N 7 HOH D 5 363 406 HOH HOH . 
N 7 HOH D 6 364 409 HOH HOH . 
N 7 HOH D 7 365 410 HOH HOH . 
N 7 HOH D 8 366 412 HOH HOH . 
N 7 HOH D 9 367 414 HOH HOH . 
N 7 HOH D 10 368 415 HOH HOH . 
N 7 HOH D 11 369 421 HOH HOH . 
N 7 HOH D 12 370 424 HOH HOH . 
N 7 HOH D 13 371 436 HOH HOH . 
N 7 HOH D 14 372 438 HOH HOH . 
N 7 HOH D 15 373 442 HOH HOH . 
N 7 HOH D 16 374 454 HOH HOH . 
N 7 HOH D 17 375 455 HOH HOH . 
N 7 HOH D 18 376 457 HOH HOH . 
N 7 HOH D 19 377 460 HOH HOH . 
N 7 HOH D 20 378 461 HOH HOH . 
N 7 HOH D 21 379 470 HOH HOH . 
N 7 HOH D 22 380 471 HOH HOH . 
N 7 HOH D 23 381 474 HOH HOH . 
N 7 HOH D 24 382 476 HOH HOH . 
N 7 HOH D 25 383 480 HOH HOH . 
N 7 HOH D 26 384 485 HOH HOH . 
O 7 HOH E 1 206 413 HOH HOH . 
O 7 HOH E 2 207 469 HOH HOH . 
O 7 HOH E 3 208 481 HOH HOH . 
P 7 HOH H 1 206 413 HOH HOH . 
P 7 HOH H 2 207 469 HOH HOH . 
P 7 HOH H 3 208 481 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               25.139 
_atom_site.Cartn_y               9.647 
_atom_site.Cartn_z               43.997 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        14.35 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           356 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#