data_1AGW # _model_server_result.job_id Cdl6dSVcRguZD2vQZfofjw _model_server_result.datetime_utc '2024-10-11 01:27:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1agw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 1AGW # _exptl.entry_id 1AGW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 335.4 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[4-(1-FORMYLPIPERAZIN-4-YL)-BENZYLIDENYL]-2-INDOLINONE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.54 _cell.angle_gamma 90 _cell.entry_id 1AGW _cell.length_a 208.36 _cell.length_b 57.08 _cell.length_c 65.53 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AGW _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C20 H21 N3 O2' _chem_comp.formula_weight 335.4 _chem_comp.id SU2 _chem_comp.mon_nstd_flag . _chem_comp.name 3-[4-(1-FORMYLPIPERAZIN-4-YL)-BENZYLIDENYL]-2-INDOLINONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms SU4984 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 SU2 sing 290 n n N1 C8 SU2 sing 291 n n N1 HN1 SU2 sing 292 n n C2 O2 SU2 doub 293 n n C2 C3 SU2 sing 294 n n C3 C9 SU2 sing 295 n n C3 C10 SU2 sing 296 n n C3 H3 SU2 sing 297 n n C4 C5 SU2 doub 298 n y C4 C9 SU2 sing 299 n y C4 H4 SU2 sing 300 n n C5 C6 SU2 sing 301 n y C5 H5 SU2 sing 302 n n C6 C7 SU2 doub 303 n y C6 H6 SU2 sing 304 n n C7 C8 SU2 sing 305 n y C7 H7 SU2 sing 306 n n C8 C9 SU2 doub 307 n y C10 C1' SU2 sing 308 n n C10 H101 SU2 sing 309 n n C10 H102 SU2 sing 310 n n C1' C2' SU2 doub 311 n y C1' C6' SU2 sing 312 n y C2' C3' SU2 sing 313 n y C2' H2' SU2 sing 314 n n C3' C4' SU2 doub 315 n y C3' H3' SU2 sing 316 n n C4' C5' SU2 sing 317 n y C4' N4' SU2 sing 318 n n C5' C6' SU2 doub 319 n y C5' H5' SU2 sing 320 n n C6' H6' SU2 sing 321 n n N1' C11 SU2 sing 322 n n N1' C2B SU2 sing 323 n n N1' C6B SU2 sing 324 n n C11 O3 SU2 doub 325 n n C11 H11 SU2 sing 326 n n C2B C3B SU2 sing 327 n n C2B "H2'1" SU2 sing 328 n n C2B "H2'2" SU2 sing 329 n n C3B N4' SU2 sing 330 n n C3B "H3'1" SU2 sing 331 n n C3B "H3'2" SU2 sing 332 n n N4' C5B SU2 sing 333 n n C5B C6B SU2 sing 334 n n C5B "H5'1" SU2 sing 335 n n C5B "H5'2" SU2 sing 336 n n C6B "H6'1" SU2 sing 337 n n C6B "H6'2" SU2 sing 338 n n # _atom_sites.entry_id 1AGW _atom_sites.fract_transf_matrix[1][1] 0.004799 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001517 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017519 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016004 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SU2 A 1 1001 1001 SU2 SU2 . D 2 SU2 B 1 1000 1000 SU2 SU2 . E 3 HOH A 1 17 17 HOH HOH . E 3 HOH A 2 18 18 HOH HOH . E 3 HOH A 3 19 19 HOH HOH . E 3 HOH A 4 21 21 HOH HOH . E 3 HOH A 5 23 23 HOH HOH . E 3 HOH A 6 24 24 HOH HOH . E 3 HOH A 7 25 25 HOH HOH . E 3 HOH A 8 26 26 HOH HOH . E 3 HOH A 9 27 27 HOH HOH . E 3 HOH A 10 29 29 HOH HOH . E 3 HOH A 11 30 30 HOH HOH . E 3 HOH A 12 32 32 HOH HOH . E 3 HOH A 13 33 33 HOH HOH . E 3 HOH A 14 34 34 HOH HOH . E 3 HOH A 15 35 35 HOH HOH . E 3 HOH A 16 36 36 HOH HOH . E 3 HOH A 17 37 37 HOH HOH . E 3 HOH A 18 39 39 HOH HOH . E 3 HOH A 19 40 40 HOH HOH . E 3 HOH A 20 41 41 HOH HOH . E 3 HOH A 21 42 42 HOH HOH . E 3 HOH A 22 46 46 HOH HOH . E 3 HOH A 23 49 49 HOH HOH . E 3 HOH A 24 50 50 HOH HOH . E 3 HOH A 25 52 52 HOH HOH . E 3 HOH A 26 54 54 HOH HOH . E 3 HOH A 27 58 58 HOH HOH . E 3 HOH A 28 59 59 HOH HOH . E 3 HOH A 29 60 60 HOH HOH . E 3 HOH A 30 63 63 HOH HOH . E 3 HOH A 31 64 64 HOH HOH . E 3 HOH A 32 65 65 HOH HOH . E 3 HOH A 33 66 66 HOH HOH . E 3 HOH A 34 68 68 HOH HOH . E 3 HOH A 35 70 70 HOH HOH . E 3 HOH A 36 72 72 HOH HOH . E 3 HOH A 37 73 73 HOH HOH . E 3 HOH A 38 74 74 HOH HOH . E 3 HOH A 39 75 75 HOH HOH . E 3 HOH A 40 76 76 HOH HOH . E 3 HOH A 41 77 77 HOH HOH . E 3 HOH A 42 78 78 HOH HOH . E 3 HOH A 43 79 79 HOH HOH . E 3 HOH A 44 80 80 HOH HOH . E 3 HOH A 45 81 81 HOH HOH . E 3 HOH A 46 82 82 HOH HOH . E 3 HOH A 47 83 83 HOH HOH . E 3 HOH A 48 84 84 HOH HOH . E 3 HOH A 49 85 85 HOH HOH . E 3 HOH A 50 86 86 HOH HOH . E 3 HOH A 51 87 87 HOH HOH . E 3 HOH A 52 88 88 HOH HOH . E 3 HOH A 53 89 89 HOH HOH . E 3 HOH A 54 90 90 HOH HOH . E 3 HOH A 55 91 91 HOH HOH . E 3 HOH A 56 93 93 HOH HOH . E 3 HOH A 57 95 95 HOH HOH . E 3 HOH A 58 96 96 HOH HOH . E 3 HOH A 59 98 98 HOH HOH . E 3 HOH A 60 99 99 HOH HOH . E 3 HOH A 61 100 100 HOH HOH . E 3 HOH A 62 101 101 HOH HOH . E 3 HOH A 63 102 102 HOH HOH . E 3 HOH A 64 103 103 HOH HOH . E 3 HOH A 65 104 104 HOH HOH . E 3 HOH A 66 105 105 HOH HOH . E 3 HOH A 67 106 106 HOH HOH . E 3 HOH A 68 107 107 HOH HOH . E 3 HOH A 69 108 108 HOH HOH . E 3 HOH A 70 111 111 HOH HOH . E 3 HOH A 71 113 113 HOH HOH . E 3 HOH A 72 114 114 HOH HOH . E 3 HOH A 73 115 115 HOH HOH . E 3 HOH A 74 117 117 HOH HOH . E 3 HOH A 75 119 119 HOH HOH . E 3 HOH A 76 120 120 HOH HOH . E 3 HOH A 77 121 121 HOH HOH . E 3 HOH A 78 122 122 HOH HOH . E 3 HOH A 79 123 123 HOH HOH . E 3 HOH A 80 124 124 HOH HOH . E 3 HOH A 81 126 126 HOH HOH . E 3 HOH A 82 128 128 HOH HOH . E 3 HOH A 83 130 130 HOH HOH . E 3 HOH A 84 132 132 HOH HOH . E 3 HOH A 85 133 133 HOH HOH . E 3 HOH A 86 134 134 HOH HOH . E 3 HOH A 87 135 135 HOH HOH . E 3 HOH A 88 136 136 HOH HOH . E 3 HOH A 89 137 137 HOH HOH . E 3 HOH A 90 139 139 HOH HOH . E 3 HOH A 91 142 142 HOH HOH . E 3 HOH A 92 143 143 HOH HOH . E 3 HOH A 93 145 145 HOH HOH . E 3 HOH A 94 148 148 HOH HOH . E 3 HOH A 95 150 150 HOH HOH . E 3 HOH A 96 152 152 HOH HOH . E 3 HOH A 97 154 154 HOH HOH . E 3 HOH A 98 156 156 HOH HOH . E 3 HOH A 99 157 157 HOH HOH . E 3 HOH A 100 158 158 HOH HOH . E 3 HOH A 101 162 162 HOH HOH . E 3 HOH A 102 163 163 HOH HOH . E 3 HOH A 103 164 164 HOH HOH . E 3 HOH A 104 165 165 HOH HOH . E 3 HOH A 105 166 166 HOH HOH . E 3 HOH A 106 167 167 HOH HOH . E 3 HOH A 107 168 168 HOH HOH . E 3 HOH A 108 171 171 HOH HOH . E 3 HOH A 109 172 172 HOH HOH . E 3 HOH A 110 173 173 HOH HOH . E 3 HOH A 111 174 174 HOH HOH . E 3 HOH A 112 175 175 HOH HOH . E 3 HOH A 113 176 176 HOH HOH . E 3 HOH A 114 177 177 HOH HOH . E 3 HOH A 115 180 180 HOH HOH . E 3 HOH A 116 184 184 HOH HOH . E 3 HOH A 117 185 185 HOH HOH . E 3 HOH A 118 186 186 HOH HOH . E 3 HOH A 119 188 188 HOH HOH . E 3 HOH A 120 189 189 HOH HOH . E 3 HOH A 121 190 190 HOH HOH . E 3 HOH A 122 193 193 HOH HOH . E 3 HOH A 123 194 194 HOH HOH . E 3 HOH A 124 197 197 HOH HOH . E 3 HOH A 125 198 198 HOH HOH . E 3 HOH A 126 199 199 HOH HOH . E 3 HOH A 127 201 201 HOH HOH . E 3 HOH A 128 202 202 HOH HOH . E 3 HOH A 129 203 203 HOH HOH . E 3 HOH A 130 204 204 HOH HOH . E 3 HOH A 131 205 205 HOH HOH . E 3 HOH A 132 206 206 HOH HOH . E 3 HOH A 133 207 207 HOH HOH . E 3 HOH A 134 208 208 HOH HOH . E 3 HOH A 135 209 209 HOH HOH . E 3 HOH A 136 214 214 HOH HOH . E 3 HOH A 137 217 217 HOH HOH . E 3 HOH A 138 219 219 HOH HOH . E 3 HOH A 139 221 221 HOH HOH . E 3 HOH A 140 222 222 HOH HOH . E 3 HOH A 141 223 223 HOH HOH . E 3 HOH A 142 225 225 HOH HOH . E 3 HOH A 143 231 231 HOH HOH . E 3 HOH A 144 232 232 HOH HOH . E 3 HOH A 145 233 233 HOH HOH . E 3 HOH A 146 234 234 HOH HOH . F 3 HOH B 1 1 1 HOH HOH . F 3 HOH B 2 2 2 HOH HOH . F 3 HOH B 3 3 3 HOH HOH . F 3 HOH B 4 4 4 HOH HOH . F 3 HOH B 5 5 5 HOH HOH . F 3 HOH B 6 6 6 HOH HOH . F 3 HOH B 7 7 7 HOH HOH . F 3 HOH B 8 8 8 HOH HOH . F 3 HOH B 9 9 9 HOH HOH . F 3 HOH B 10 10 10 HOH HOH . F 3 HOH B 11 11 11 HOH HOH . F 3 HOH B 12 12 12 HOH HOH . F 3 HOH B 13 13 13 HOH HOH . F 3 HOH B 14 14 14 HOH HOH . F 3 HOH B 15 15 15 HOH HOH . F 3 HOH B 16 16 16 HOH HOH . F 3 HOH B 17 20 20 HOH HOH . F 3 HOH B 18 22 22 HOH HOH . F 3 HOH B 19 28 28 HOH HOH . F 3 HOH B 20 31 31 HOH HOH . F 3 HOH B 21 38 38 HOH HOH . F 3 HOH B 22 43 43 HOH HOH . F 3 HOH B 23 44 44 HOH HOH . F 3 HOH B 24 45 45 HOH HOH . F 3 HOH B 25 47 47 HOH HOH . F 3 HOH B 26 48 48 HOH HOH . F 3 HOH B 27 51 51 HOH HOH . F 3 HOH B 28 53 53 HOH HOH . F 3 HOH B 29 55 55 HOH HOH . F 3 HOH B 30 56 56 HOH HOH . F 3 HOH B 31 57 57 HOH HOH . F 3 HOH B 32 61 61 HOH HOH . F 3 HOH B 33 62 62 HOH HOH . F 3 HOH B 34 67 67 HOH HOH . F 3 HOH B 35 69 69 HOH HOH . F 3 HOH B 36 71 71 HOH HOH . F 3 HOH B 37 92 92 HOH HOH . F 3 HOH B 38 94 94 HOH HOH . F 3 HOH B 39 97 97 HOH HOH . F 3 HOH B 40 109 109 HOH HOH . F 3 HOH B 41 110 110 HOH HOH . F 3 HOH B 42 112 112 HOH HOH . F 3 HOH B 43 116 116 HOH HOH . F 3 HOH B 44 118 118 HOH HOH . F 3 HOH B 45 125 125 HOH HOH . F 3 HOH B 46 127 127 HOH HOH . F 3 HOH B 47 129 129 HOH HOH . F 3 HOH B 48 131 131 HOH HOH . F 3 HOH B 49 138 138 HOH HOH . F 3 HOH B 50 140 140 HOH HOH . F 3 HOH B 51 141 141 HOH HOH . F 3 HOH B 52 144 144 HOH HOH . F 3 HOH B 53 146 146 HOH HOH . F 3 HOH B 54 147 147 HOH HOH . F 3 HOH B 55 149 149 HOH HOH . F 3 HOH B 56 151 151 HOH HOH . F 3 HOH B 57 153 153 HOH HOH . F 3 HOH B 58 155 155 HOH HOH . F 3 HOH B 59 159 159 HOH HOH . F 3 HOH B 60 160 160 HOH HOH . F 3 HOH B 61 161 161 HOH HOH . F 3 HOH B 62 169 169 HOH HOH . F 3 HOH B 63 170 170 HOH HOH . F 3 HOH B 64 178 178 HOH HOH . F 3 HOH B 65 179 179 HOH HOH . F 3 HOH B 66 181 181 HOH HOH . F 3 HOH B 67 182 182 HOH HOH . F 3 HOH B 68 183 183 HOH HOH . F 3 HOH B 69 187 187 HOH HOH . F 3 HOH B 70 191 191 HOH HOH . F 3 HOH B 71 192 192 HOH HOH . F 3 HOH B 72 195 195 HOH HOH . F 3 HOH B 73 196 196 HOH HOH . F 3 HOH B 74 200 200 HOH HOH . F 3 HOH B 75 210 210 HOH HOH . F 3 HOH B 76 211 211 HOH HOH . F 3 HOH B 77 212 212 HOH HOH . F 3 HOH B 78 213 213 HOH HOH . F 3 HOH B 79 215 215 HOH HOH . F 3 HOH B 80 216 216 HOH HOH . F 3 HOH B 81 218 218 HOH HOH . F 3 HOH B 82 220 220 HOH HOH . F 3 HOH B 83 224 224 HOH HOH . F 3 HOH B 84 226 226 HOH HOH . F 3 HOH B 85 227 227 HOH HOH . F 3 HOH B 86 228 228 HOH HOH . F 3 HOH B 87 229 229 HOH HOH . F 3 HOH B 88 230 230 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 SU2 . . . C 2 5.763 2.531 20.322 1 40.5 ? N1 SU2 1001 A 1 HETATM 2 C C2 SU2 . . . C 2 6.434 2.994 21.427 1 40.11 ? C2 SU2 1001 A 1 HETATM 3 O O2 SU2 . . . C 2 6.373 2.382 22.494 1 36.41 ? O2 SU2 1001 A 1 HETATM 4 C C3 SU2 . . . C 2 7.095 4.165 21.131 1 41.97 ? C3 SU2 1001 A 1 HETATM 5 C C4 SU2 . . . C 2 7.197 5.445 18.85 1 37.17 ? C4 SU2 1001 A 1 HETATM 6 C C5 SU2 . . . C 2 6.724 5.4 17.547 1 35.31 ? C5 SU2 1001 A 1 HETATM 7 C C6 SU2 . . . C 2 5.89 4.356 17.114 1 35.46 ? C6 SU2 1001 A 1 HETATM 8 C C7 SU2 . . . C 2 5.517 3.338 17.955 1 37.23 ? C7 SU2 1001 A 1 HETATM 9 C C8 SU2 . . . C 2 5.988 3.383 19.272 1 40.4 ? C8 SU2 1001 A 1 HETATM 10 C C9 SU2 . . . C 2 6.824 4.424 19.74 1 41.23 ? C9 SU2 1001 A 1 HETATM 11 C C10 SU2 . . . C 2 7.942 5.053 22.036 1 47.02 ? C10 SU2 1001 A 1 HETATM 12 C C1' SU2 . . . C 2 8.75 4.616 23.254 1 54.37 ? C1' SU2 1001 A 1 HETATM 13 C C2' SU2 . . . C 2 9.71 5.47 23.781 1 58.87 ? C2' SU2 1001 A 1 HETATM 14 C C3' SU2 . . . C 2 10.461 5.1 24.898 1 60.77 ? C3' SU2 1001 A 1 HETATM 15 C C4' SU2 . . . C 2 10.264 3.868 25.513 1 62.1 ? C4' SU2 1001 A 1 HETATM 16 C C5' SU2 . . . C 2 9.298 3.017 24.982 1 57.95 ? C5' SU2 1001 A 1 HETATM 17 C C6' SU2 . . . C 2 8.548 3.386 23.863 1 56.28 ? C6' SU2 1001 A 1 HETATM 18 N N1' SU2 . . . C 2 12.493 2.711 29.152 1 73.2 ? N1' SU2 1001 A 1 HETATM 19 C C11 SU2 . . . C 2 13.263 2.277 30.281 1 76.38 ? C11 SU2 1001 A 1 HETATM 20 O O3 SU2 . . . C 2 14.236 2.845 30.785 1 80.37 ? O3 SU2 1001 A 1 HETATM 21 C C2B SU2 . . . C 2 11.764 1.713 28.306 1 70.94 ? C2B SU2 1001 A 1 HETATM 22 C C3B SU2 . . . C 2 10.669 2.264 27.421 1 68.84 ? C3B SU2 1001 A 1 HETATM 23 N N4' SU2 . . . C 2 11.03 3.489 26.65 1 66.39 ? N4' SU2 1001 A 1 HETATM 24 C C5B SU2 . . . C 2 11.751 4.522 27.468 1 69.35 ? C5B SU2 1001 A 1 HETATM 25 C C6B SU2 . . . C 2 12.819 3.991 28.426 1 71.32 ? C6B SU2 1001 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 25 #