data_1AH5 # _model_server_result.job_id oEiyHkQeedm_PJYThullbg _model_server_result.datetime_utc '2024-12-02 04:27:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ah5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":314}' # _entry.id 1AH5 # _exptl.entry_id 1AH5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 420.413 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-[5-{[3-(2-carboxyethyl)-4-(carboxymethyl)-5-methyl-1H-pyrrol-2-yl]methyl}-4-(carboxymethyl)-1H-pyrrol-3-yl]propanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1AH5 _cell.length_a 88.47 _cell.length_b 76.15 _cell.length_c 50.79 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AH5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A N MSE 28 A MSE 28 1_555 A C LEU 27 A LEU 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C MSE 28 A MSE 28 1_555 A N ALA 29 A ALA 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale3 A N MSE 41 A MSE 41 1_555 A C PRO 40 A PRO 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C MSE 41 A MSE 41 1_555 A N VAL 42 A VAL 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale5 A N MSE 82 A MSE 82 1_555 A C SER 81 A SER 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 A C MSE 82 A MSE 82 1_555 A N LYS 83 A LYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale7 A N MSE 234 A MSE 234 1_555 A C ALA 233 A ALA 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 A C MSE 234 A MSE 234 1_555 A N ASN 235 A ASN 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale9 A N MSE 286 A MSE 286 1_555 A C GLN 285 A GLN 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale10 A C MSE 286 A MSE 286 1_555 A N GLY 287 A GLY 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale11 B CHA DPM . A DPM 314 1_555 A SG CYS 242 A CYS 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.807 ? # _chem_comp.formula 'C20 H24 N2 O8' _chem_comp.formula_weight 420.413 _chem_comp.id DPM _chem_comp.mon_nstd_flag . _chem_comp.name '3-[5-{[3-(2-carboxyethyl)-4-(carboxymethyl)-5-methyl-1H-pyrrol-2-yl]methyl}-4-(carboxymethyl)-1H-pyrrol-3-yl]propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'DIPYRROMETHANE COFACTOR' # _atom_sites.entry_id 1AH5 _atom_sites.fract_transf_matrix[1][1] 0.011303 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013132 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019689 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DPM A 1 314 314 DPM DPM . C 3 HOH A 1 350 350 HOH HOH . C 3 HOH A 2 351 351 HOH HOH . C 3 HOH A 3 352 352 HOH HOH . C 3 HOH A 4 353 353 HOH HOH . C 3 HOH A 5 354 354 HOH HOH . C 3 HOH A 6 355 355 HOH HOH . C 3 HOH A 7 356 356 HOH HOH . C 3 HOH A 8 357 357 HOH HOH . C 3 HOH A 9 358 358 HOH HOH . C 3 HOH A 10 359 359 HOH HOH . C 3 HOH A 11 360 360 HOH HOH . C 3 HOH A 12 361 361 HOH HOH . C 3 HOH A 13 362 362 HOH HOH . C 3 HOH A 14 363 363 HOH HOH . C 3 HOH A 15 364 364 HOH HOH . C 3 HOH A 16 365 365 HOH HOH . C 3 HOH A 17 366 366 HOH HOH . C 3 HOH A 18 367 367 HOH HOH . C 3 HOH A 19 368 368 HOH HOH . C 3 HOH A 20 369 369 HOH HOH . C 3 HOH A 21 370 370 HOH HOH . C 3 HOH A 22 371 371 HOH HOH . C 3 HOH A 23 372 372 HOH HOH . C 3 HOH A 24 373 373 HOH HOH . C 3 HOH A 25 374 374 HOH HOH . C 3 HOH A 26 375 375 HOH HOH . C 3 HOH A 27 376 376 HOH HOH . C 3 HOH A 28 377 377 HOH HOH . C 3 HOH A 29 378 378 HOH HOH . C 3 HOH A 30 379 379 HOH HOH . C 3 HOH A 31 380 380 HOH HOH . C 3 HOH A 32 381 381 HOH HOH . C 3 HOH A 33 382 382 HOH HOH . C 3 HOH A 34 383 383 HOH HOH . C 3 HOH A 35 384 384 HOH HOH . C 3 HOH A 36 385 385 HOH HOH . C 3 HOH A 37 386 386 HOH HOH . C 3 HOH A 38 387 387 HOH HOH . C 3 HOH A 39 388 388 HOH HOH . C 3 HOH A 40 389 389 HOH HOH . C 3 HOH A 41 390 390 HOH HOH . C 3 HOH A 42 391 391 HOH HOH . C 3 HOH A 43 392 392 HOH HOH . C 3 HOH A 44 393 393 HOH HOH . C 3 HOH A 45 394 394 HOH HOH . C 3 HOH A 46 395 395 HOH HOH . C 3 HOH A 47 396 396 HOH HOH . C 3 HOH A 48 397 397 HOH HOH . C 3 HOH A 49 398 398 HOH HOH . C 3 HOH A 50 399 399 HOH HOH . C 3 HOH A 51 400 400 HOH HOH . C 3 HOH A 52 401 401 HOH HOH . C 3 HOH A 53 402 402 HOH HOH . C 3 HOH A 54 403 403 HOH HOH . C 3 HOH A 55 404 404 HOH HOH . C 3 HOH A 56 405 405 HOH HOH . C 3 HOH A 57 406 406 HOH HOH . C 3 HOH A 58 407 407 HOH HOH . C 3 HOH A 59 408 408 HOH HOH . C 3 HOH A 60 409 409 HOH HOH . C 3 HOH A 61 410 410 HOH HOH . C 3 HOH A 62 411 411 HOH HOH . C 3 HOH A 63 412 412 HOH HOH . C 3 HOH A 64 413 413 HOH HOH . C 3 HOH A 65 414 414 HOH HOH . C 3 HOH A 66 415 415 HOH HOH . C 3 HOH A 67 416 416 HOH HOH . C 3 HOH A 68 417 417 HOH HOH . C 3 HOH A 69 418 418 HOH HOH . C 3 HOH A 70 419 419 HOH HOH . C 3 HOH A 71 420 420 HOH HOH . C 3 HOH A 72 421 421 HOH HOH . C 3 HOH A 73 422 422 HOH HOH . C 3 HOH A 74 424 424 HOH HOH . C 3 HOH A 75 425 425 HOH HOH . C 3 HOH A 76 426 426 HOH HOH . C 3 HOH A 77 427 427 HOH HOH . C 3 HOH A 78 428 428 HOH HOH . C 3 HOH A 79 429 429 HOH HOH . C 3 HOH A 80 430 430 HOH HOH . C 3 HOH A 81 431 431 HOH HOH . C 3 HOH A 82 432 432 HOH HOH . C 3 HOH A 83 433 433 HOH HOH . C 3 HOH A 84 434 434 HOH HOH . C 3 HOH A 85 435 435 HOH HOH . C 3 HOH A 86 436 436 HOH HOH . C 3 HOH A 87 437 437 HOH HOH . C 3 HOH A 88 438 438 HOH HOH . C 3 HOH A 89 439 439 HOH HOH . C 3 HOH A 90 440 440 HOH HOH . C 3 HOH A 91 441 441 HOH HOH . C 3 HOH A 92 442 442 HOH HOH . C 3 HOH A 93 443 443 HOH HOH . C 3 HOH A 94 444 444 HOH HOH . C 3 HOH A 95 445 445 HOH HOH . C 3 HOH A 96 446 446 HOH HOH . C 3 HOH A 97 447 447 HOH HOH . C 3 HOH A 98 448 448 HOH HOH . C 3 HOH A 99 449 449 HOH HOH . C 3 HOH A 100 450 450 HOH HOH . C 3 HOH A 101 451 451 HOH HOH . C 3 HOH A 102 453 453 HOH HOH . C 3 HOH A 103 454 454 HOH HOH . C 3 HOH A 104 455 455 HOH HOH . C 3 HOH A 105 456 456 HOH HOH . C 3 HOH A 106 457 457 HOH HOH . C 3 HOH A 107 458 458 HOH HOH . C 3 HOH A 108 459 459 HOH HOH . C 3 HOH A 109 460 460 HOH HOH . C 3 HOH A 110 461 461 HOH HOH . C 3 HOH A 111 463 463 HOH HOH . C 3 HOH A 112 464 464 HOH HOH . C 3 HOH A 113 465 465 HOH HOH . C 3 HOH A 114 466 466 HOH HOH . C 3 HOH A 115 467 467 HOH HOH . C 3 HOH A 116 468 468 HOH HOH . C 3 HOH A 117 470 470 HOH HOH . C 3 HOH A 118 472 472 HOH HOH . C 3 HOH A 119 473 473 HOH HOH . C 3 HOH A 120 474 474 HOH HOH . C 3 HOH A 121 475 475 HOH HOH . C 3 HOH A 122 476 476 HOH HOH . C 3 HOH A 123 477 477 HOH HOH . C 3 HOH A 124 478 478 HOH HOH . C 3 HOH A 125 479 479 HOH HOH . C 3 HOH A 126 480 480 HOH HOH . C 3 HOH A 127 481 481 HOH HOH . C 3 HOH A 128 482 482 HOH HOH . C 3 HOH A 129 483 483 HOH HOH . C 3 HOH A 130 484 484 HOH HOH . C 3 HOH A 131 485 485 HOH HOH . C 3 HOH A 132 486 486 HOH HOH . C 3 HOH A 133 487 487 HOH HOH . C 3 HOH A 134 488 488 HOH HOH . C 3 HOH A 135 489 489 HOH HOH . C 3 HOH A 136 490 490 HOH HOH . C 3 HOH A 137 492 492 HOH HOH . C 3 HOH A 138 493 493 HOH HOH . C 3 HOH A 139 494 494 HOH HOH . C 3 HOH A 140 495 495 HOH HOH . C 3 HOH A 141 496 496 HOH HOH . C 3 HOH A 142 498 498 HOH HOH . C 3 HOH A 143 499 499 HOH HOH . C 3 HOH A 144 500 500 HOH HOH . C 3 HOH A 145 501 501 HOH HOH . C 3 HOH A 146 502 502 HOH HOH . C 3 HOH A 147 503 503 HOH HOH . C 3 HOH A 148 504 504 HOH HOH . C 3 HOH A 149 505 505 HOH HOH . C 3 HOH A 150 506 506 HOH HOH . C 3 HOH A 151 507 507 HOH HOH . C 3 HOH A 152 508 508 HOH HOH . C 3 HOH A 153 509 509 HOH HOH . C 3 HOH A 154 510 510 HOH HOH . C 3 HOH A 155 511 511 HOH HOH . C 3 HOH A 156 512 512 HOH HOH . C 3 HOH A 157 513 513 HOH HOH . C 3 HOH A 158 514 514 HOH HOH . C 3 HOH A 159 516 516 HOH HOH . C 3 HOH A 160 519 519 HOH HOH . C 3 HOH A 161 520 520 HOH HOH . C 3 HOH A 162 521 521 HOH HOH . C 3 HOH A 163 522 522 HOH HOH . C 3 HOH A 164 523 523 HOH HOH . C 3 HOH A 165 524 524 HOH HOH . C 3 HOH A 166 525 525 HOH HOH . C 3 HOH A 167 526 526 HOH HOH . C 3 HOH A 168 527 527 HOH HOH . C 3 HOH A 169 528 528 HOH HOH . C 3 HOH A 170 529 529 HOH HOH . C 3 HOH A 171 530 530 HOH HOH . C 3 HOH A 172 531 531 HOH HOH . C 3 HOH A 173 532 532 HOH HOH . C 3 HOH A 174 533 533 HOH HOH . C 3 HOH A 175 534 534 HOH HOH . C 3 HOH A 176 535 535 HOH HOH . C 3 HOH A 177 536 536 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1A DPM . . . B 2 16.246 0.873 27.332 1 9.88 ? C1A DPM 314 A 1 HETATM 2 C C2A DPM . . . B 2 17.039 0.323 28.289 1 9.93 ? C2A DPM 314 A 1 HETATM 3 C C3A DPM . . . B 2 18.048 1.283 28.589 1 10.08 ? C3A DPM 314 A 1 HETATM 4 C C4A DPM . . . B 2 17.814 2.373 27.796 1 9.62 ? C4A DPM 314 A 1 HETATM 5 C C5A DPM . . . B 2 16.819 -1.022 28.942 1 8.14 ? C5A DPM 314 A 1 HETATM 6 C C6A DPM . . . B 2 17.747 -2.145 28.474 1 6.94 ? C6A DPM 314 A 1 HETATM 7 C C7A DPM . . . B 2 19.174 1.145 29.58 1 7.86 ? C7A DPM 314 A 1 HETATM 8 C C8A DPM . . . B 2 18.728 1.442 30.992 1 10.02 ? C8A DPM 314 A 1 HETATM 9 C C9A DPM . . . B 2 19.838 1.343 32.009 1 9.13 ? C9A DPM 314 A 1 HETATM 10 C CHA DPM . . . B 2 15.052 0.34 26.677 1 2.82 ? CHA DPM 314 A 1 HETATM 11 N NA DPM . . . B 2 16.712 2.121 27.031 1 8.51 ? NA DPM 314 A 1 HETATM 12 O O1A DPM . . . B 2 18.742 -1.892 27.766 1 2.62 ? O1A DPM 314 A 1 HETATM 13 O O2A DPM . . . B 2 17.474 -3.304 28.835 1 12.35 ? O2A DPM 314 A 1 HETATM 14 O O3A DPM . . . B 2 19.728 2.006 33.052 1 10.16 ? O3A DPM 314 A 1 HETATM 15 O O4A DPM . . . B 2 20.805 0.598 31.785 1 17.89 ? O4A DPM 314 A 1 HETATM 16 C C1B DPM . . . B 2 19.256 3.896 26.381 1 10.72 ? C1B DPM 314 A 1 HETATM 17 C C2B DPM . . . B 2 20.587 3.949 26.118 1 11.05 ? C2B DPM 314 A 1 HETATM 18 C C3B DPM . . . B 2 20.727 4.082 24.695 1 11.44 ? C3B DPM 314 A 1 HETATM 19 C C4B DPM . . . B 2 19.463 4.125 24.175 1 13.13 ? C4B DPM 314 A 1 HETATM 20 C C5B DPM . . . B 2 21.666 3.943 27.186 1 11.4 ? C5B DPM 314 A 1 HETATM 21 C C6B DPM . . . B 2 22.591 2.743 27.183 1 12.23 ? C6B DPM 314 A 1 HETATM 22 C C7B DPM . . . B 2 22.002 4.092 23.882 1 10.32 ? C7B DPM 314 A 1 HETATM 23 C C8B DPM . . . B 2 22.374 2.73 23.274 1 13.81 ? C8B DPM 314 A 1 HETATM 24 C C9B DPM . . . B 2 21.51 2.306 22.086 1 21.05 ? C9B DPM 314 A 1 HETATM 25 C CHB DPM . . . B 2 18.514 3.705 27.68 1 10.37 ? CHB DPM 314 A 1 HETATM 26 N NB DPM . . . B 2 18.567 4.009 25.208 1 10.69 ? NB DPM 314 A 1 HETATM 27 O O1B DPM . . . B 2 23.815 2.96 27.126 1 14.77 ? O1B DPM 314 A 1 HETATM 28 O O2B DPM . . . B 2 22.104 1.594 27.247 1 11.11 ? O2B DPM 314 A 1 HETATM 29 O O3B DPM . . . B 2 21.261 3.134 21.189 1 26.45 ? O3B DPM 314 A 1 HETATM 30 O O4B DPM . . . B 2 21.1 1.131 22.031 1 21.22 ? O4B DPM 314 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 348 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 30 #