data_1AHB # _model_server_result.job_id 6VsvLH6P66IgjRWDdDRJtA _model_server_result.datetime_utc '2024-11-28 08:26:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ahb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":339}' # _entry.id 1AHB # _exptl.entry_id 1AHB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "FORMYCIN-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1AHB _cell.length_a 131.4 _cell.length_b 131.4 _cell.length_c 49.8 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AHB _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id FMP _chem_comp.mon_nstd_flag . _chem_comp.name "FORMYCIN-5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P FMP doub 70 n n P O2P FMP sing 71 n n P O3P FMP sing 72 n n P O5' FMP sing 73 n n O2P HOP2 FMP sing 74 n n O3P HOP3 FMP sing 75 n n O5' C5' FMP sing 76 n n C5' C4' FMP sing 77 n n C5' "H5'1" FMP sing 78 n n C5' "H5'2" FMP sing 79 n n C4' O4' FMP sing 80 n n C4' C3' FMP sing 81 n n C4' H4' FMP sing 82 n n O4' C1' FMP sing 83 n n C3' O3' FMP sing 84 n n C3' C2' FMP sing 85 n n C3' H3' FMP sing 86 n n O3' HO3' FMP sing 87 n n C2' O2' FMP sing 88 n n C2' C1' FMP sing 89 n n C2' H2' FMP sing 90 n n O2' HO2' FMP sing 91 n n C1' C9 FMP sing 92 n n C1' H1' FMP sing 93 n n C9 N8 FMP doub 94 n y C9 C4 FMP sing 95 n y N8 N7 FMP sing 96 n y N7 C5 FMP sing 97 n y N7 HN7 FMP sing 98 n n C6 N6 FMP sing 99 n n C6 C5 FMP sing 100 n y C6 N1 FMP doub 101 n y N6 HN61 FMP sing 102 n n N6 HN62 FMP sing 103 n n C5 C4 FMP doub 104 n y C4 N3 FMP sing 105 n y N3 C2 FMP doub 106 n y C2 N1 FMP sing 107 n y C2 H2 FMP sing 108 n n # _atom_sites.entry_id 1AHB _atom_sites.fract_transf_matrix[1][1] 0.00761 _atom_sites.fract_transf_matrix[1][2] 0.004394 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008788 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02008 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMP A 1 339 339 FMP FMP . C 3 HOH A 1 340 1 HOH HOH . C 3 HOH A 2 341 2 HOH HOH . C 3 HOH A 3 342 3 HOH HOH . C 3 HOH A 4 343 4 HOH HOH . C 3 HOH A 5 344 5 HOH HOH . C 3 HOH A 6 345 6 HOH HOH . C 3 HOH A 7 346 7 HOH HOH . C 3 HOH A 8 347 8 HOH HOH . C 3 HOH A 9 348 9 HOH HOH . C 3 HOH A 10 349 10 HOH HOH . C 3 HOH A 11 350 11 HOH HOH . C 3 HOH A 12 351 12 HOH HOH . C 3 HOH A 13 352 13 HOH HOH . C 3 HOH A 14 353 14 HOH HOH . C 3 HOH A 15 354 15 HOH HOH . C 3 HOH A 16 355 16 HOH HOH . C 3 HOH A 17 356 17 HOH HOH . C 3 HOH A 18 357 18 HOH HOH . C 3 HOH A 19 358 19 HOH HOH . C 3 HOH A 20 359 20 HOH HOH . C 3 HOH A 21 360 21 HOH HOH . C 3 HOH A 22 361 22 HOH HOH . C 3 HOH A 23 362 23 HOH HOH . C 3 HOH A 24 363 24 HOH HOH . C 3 HOH A 25 364 25 HOH HOH . C 3 HOH A 26 365 26 HOH HOH . C 3 HOH A 27 366 27 HOH HOH . C 3 HOH A 28 367 28 HOH HOH . C 3 HOH A 29 368 29 HOH HOH . C 3 HOH A 30 369 30 HOH HOH . C 3 HOH A 31 370 31 HOH HOH . C 3 HOH A 32 371 32 HOH HOH . C 3 HOH A 33 372 33 HOH HOH . C 3 HOH A 34 373 34 HOH HOH . C 3 HOH A 35 374 35 HOH HOH . C 3 HOH A 36 375 36 HOH HOH . C 3 HOH A 37 376 37 HOH HOH . C 3 HOH A 38 377 38 HOH HOH . C 3 HOH A 39 378 39 HOH HOH . C 3 HOH A 40 379 40 HOH HOH . C 3 HOH A 41 380 41 HOH HOH . C 3 HOH A 42 381 42 HOH HOH . C 3 HOH A 43 382 43 HOH HOH . C 3 HOH A 44 383 44 HOH HOH . C 3 HOH A 45 384 45 HOH HOH . C 3 HOH A 46 385 46 HOH HOH . C 3 HOH A 47 386 47 HOH HOH . C 3 HOH A 48 387 48 HOH HOH . C 3 HOH A 49 388 49 HOH HOH . C 3 HOH A 50 389 50 HOH HOH . C 3 HOH A 51 390 51 HOH HOH . C 3 HOH A 52 391 52 HOH HOH . C 3 HOH A 53 392 53 HOH HOH . C 3 HOH A 54 393 54 HOH HOH . C 3 HOH A 55 394 55 HOH HOH . C 3 HOH A 56 395 56 HOH HOH . C 3 HOH A 57 396 57 HOH HOH . C 3 HOH A 58 397 58 HOH HOH . C 3 HOH A 59 398 59 HOH HOH . C 3 HOH A 60 399 60 HOH HOH . C 3 HOH A 61 400 61 HOH HOH . C 3 HOH A 62 401 62 HOH HOH . C 3 HOH A 63 402 63 HOH HOH . C 3 HOH A 64 403 64 HOH HOH . C 3 HOH A 65 404 65 HOH HOH . C 3 HOH A 66 405 66 HOH HOH . C 3 HOH A 67 406 67 HOH HOH . C 3 HOH A 68 407 68 HOH HOH . C 3 HOH A 69 408 69 HOH HOH . C 3 HOH A 70 409 70 HOH HOH . C 3 HOH A 71 410 71 HOH HOH . C 3 HOH A 72 411 72 HOH HOH . C 3 HOH A 73 412 73 HOH HOH . C 3 HOH A 74 413 74 HOH HOH . C 3 HOH A 75 414 75 HOH HOH . C 3 HOH A 76 415 76 HOH HOH . C 3 HOH A 77 416 77 HOH HOH . C 3 HOH A 78 417 78 HOH HOH . C 3 HOH A 79 418 79 HOH HOH . C 3 HOH A 80 419 80 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P FMP . . . B 2 59.509 90.443 -2.114 1 118.68 ? P FMP 339 A 1 HETATM 2 O O1P FMP . . . B 2 60.184 91.546 -2.849 1 120.58 ? O1P FMP 339 A 1 HETATM 3 O O2P FMP . . . B 2 58.101 90.74 -1.718 1 119.87 ? O2P FMP 339 A 1 HETATM 4 O O3P FMP . . . B 2 59.731 89.061 -2.669 1 120.95 ? O3P FMP 339 A 1 HETATM 5 O O5' FMP . . . B 2 60.34 90.373 -0.802 1 99.9 ? O5' FMP 339 A 1 HETATM 6 C C5' FMP . . . B 2 61.734 90.069 -0.617 1 70.32 ? C5' FMP 339 A 1 HETATM 7 C C4' FMP . . . B 2 61.946 89.654 0.846 1 50.92 ? C4' FMP 339 A 1 HETATM 8 O O4' FMP . . . B 2 61.529 90.732 1.667 1 32.74 ? O4' FMP 339 A 1 HETATM 9 C C3' FMP . . . B 2 61.144 88.416 1.291 1 43.35 ? C3' FMP 339 A 1 HETATM 10 O O3' FMP . . . B 2 62.039 87.361 1.646 1 33.75 ? O3' FMP 339 A 1 HETATM 11 C C2' FMP . . . B 2 60.464 88.932 2.536 1 37.8 ? C2' FMP 339 A 1 HETATM 12 O O2' FMP . . . B 2 60.4 87.909 3.541 1 52.9 ? O2' FMP 339 A 1 HETATM 13 C C1' FMP . . . B 2 61.353 90.1 2.918 1 28.41 ? C1' FMP 339 A 1 HETATM 14 C C9 FMP . . . B 2 60.707 91.103 3.778 1 18.34 ? C9 FMP 339 A 1 HETATM 15 N N8 FMP . . . B 2 60.108 92.183 3.365 1 11.36 ? N8 FMP 339 A 1 HETATM 16 N N7 FMP . . . B 2 59.558 92.882 4.362 1 14.42 ? N7 FMP 339 A 1 HETATM 17 C C6 FMP . . . B 2 59.661 92.434 6.872 1 13.05 ? C6 FMP 339 A 1 HETATM 18 N N6 FMP . . . B 2 58.767 93.351 7.237 1 15.45 ? N6 FMP 339 A 1 HETATM 19 C C5 FMP . . . B 2 59.94 92.218 5.513 1 10.29 ? C5 FMP 339 A 1 HETATM 20 C C4 FMP . . . B 2 60.696 91.14 5.183 1 11.9 ? C4 FMP 339 A 1 HETATM 21 N N3 FMP . . . B 2 61.294 90.286 6.071 1 13.91 ? N3 FMP 339 A 1 HETATM 22 C C2 FMP . . . B 2 61.028 90.648 7.326 1 10.22 ? C2 FMP 339 A 1 HETATM 23 N N1 FMP . . . B 2 60.271 91.643 7.782 1 14.19 ? N1 FMP 339 A 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 236 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #