data_1AHP # _model_server_result.job_id JeKZJHQmPBoDCwtK_sZtFA _model_server_result.datetime_utc '2024-11-27 22:07:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ahp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":999}' # _entry.id 1AHP # _exptl.entry_id 1AHP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 119.7 _cell.angle_gamma 90 _cell.entry_id 1AHP _cell.length_a 173.2 _cell.length_b 112.4 _cell.length_c 121.7 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AHP _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 J N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C GLC 1 C 1 GLC A 1006 MAL 2 n C GLC 2 C 2 GLC A 1006 MAL 2 n D GLC 1 D 1 GLC B 1006 MAL 2 n D GLC 2 D 2 GLC B 1006 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 646 A LYS 645 1_555 G C4A PLP . A PLP 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? covale ? covale2 B NZ LYS 646 B LYS 645 1_555 J C4A PLP . B PLP 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? covale ? covale3 C O4 GLC . C GLC 1 1_555 C C1 GLC . C GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.494 sing covale ? covale4 D O4 GLC . D GLC 1 1_555 D C1 GLC . D GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.493 sing # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PLP doub 295 n y N1 C6 PLP sing 296 n y C2 C2A PLP sing 297 n n C2 C3 PLP sing 298 n y C2A H2A1 PLP sing 299 n n C2A H2A2 PLP sing 300 n n C2A H2A3 PLP sing 301 n n C3 O3 PLP sing 302 n n C3 C4 PLP doub 303 n y O3 HO3 PLP sing 304 n n C4 C4A PLP sing 305 n n C4 C5 PLP sing 306 n y C4A O4A PLP doub 307 n n C4A H4A PLP sing 308 n n C5 C6 PLP doub 309 n y C5 C5A PLP sing 310 n n C6 H6 PLP sing 311 n n C5A O4P PLP sing 312 n n C5A H5A1 PLP sing 313 n n C5A H5A2 PLP sing 314 n n O4P P PLP sing 315 n n P O1P PLP doub 316 n n P O2P PLP sing 317 n n P O3P PLP sing 318 n n O2P HOP2 PLP sing 319 n n O3P HOP3 PLP sing 320 n n # _atom_sites.entry_id 1AHP _atom_sites.fract_transf_matrix[1][1] 0.005774 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003293 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008897 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00946 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 SO4 A 1 997 997 SO4 SO4 . F 4 GOL A 1 998 998 GOL GOL . G 5 PLP A 1 999 999 PLP PLP . H 3 SO4 B 1 997 997 SO4 SO4 . I 4 GOL B 1 998 998 GOL GOL . J 5 PLP B 1 999 999 PLP PLP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . J 5 35.894 27.034 27.679 1 25 ? N1 PLP 999 B 1 HETATM 2 C C2 PLP . . . J 5 35.847 26.741 29.008 1 25 ? C2 PLP 999 B 1 HETATM 3 C C2A PLP . . . J 5 36.344 25.414 29.495 1 25 ? C2A PLP 999 B 1 HETATM 4 C C3 PLP . . . J 5 35.519 27.687 29.897 1 25 ? C3 PLP 999 B 1 HETATM 5 O O3 PLP . . . J 5 35.701 27.426 31.237 1 25 ? O3 PLP 999 B 1 HETATM 6 C C4 PLP . . . J 5 35.202 28.957 29.45 1 25 ? C4 PLP 999 B 1 HETATM 7 C C4A PLP . . . J 5 34.234 29.802 30.27 1 25 ? C4A PLP 999 B 1 HETATM 8 C C5 PLP . . . J 5 35.351 29.272 28.118 1 25 ? C5 PLP 999 B 1 HETATM 9 C C6 PLP . . . J 5 35.68 28.304 27.235 1 25 ? C6 PLP 999 B 1 HETATM 10 C C5A PLP . . . J 5 35.135 30.693 27.607 1 25 ? C5A PLP 999 B 1 HETATM 11 O O4P PLP . . . J 5 36.355 31.378 27.256 1 25 ? O4P PLP 999 B 1 HETATM 12 P P PLP . . . J 5 36.257 32.774 26.427 1 25 ? P PLP 999 B 1 HETATM 13 O O1P PLP . . . J 5 36.951 32.545 25.16 1 25 ? O1P PLP 999 B 1 HETATM 14 O O2P PLP . . . J 5 34.698 33.179 26.233 1 25 ? O2P PLP 999 B 1 HETATM 15 O O3P PLP . . . J 5 36.673 33.85 27.379 1 25 ? O3P PLP 999 B 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 15 #