data_1AHZ # _model_server_result.job_id 1eGJKoVMH_o2yuTfAWzVZQ _model_server_result.datetime_utc '2024-11-21 22:27:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ahz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":600}' # _entry.id 1AHZ # _exptl.entry_id 1AHZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1AHZ _cell.length_a 140.97 _cell.length_b 140.97 _cell.length_c 133.45 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AHZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? octameric 8 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1,2,3,4 A,B,C,D,E,F,G 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 140.97 140.97 0 3 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 140.97 0 0 4 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 140.97 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NE2 HIS 422 A HIS 422 1_555 D C8M FAD . A FAD 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.364 ? covale ? covale2 A CE1 HIS 422 A HIS 422 1_555 D C8M FAD . A FAD 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale3 B NE2 HIS 422 B HIS 422 1_555 G C8M FAD . B FAD 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.363 ? covale ? covale4 B CE1 HIS 422 B HIS 422 1_555 G C8M FAD . B FAD 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 117 n n PA O2A FAD sing 118 n n PA O5B FAD sing 119 n n PA O3P FAD sing 120 n n O2A HOA2 FAD sing 121 n n O5B C5B FAD sing 122 n n C5B C4B FAD sing 123 n n C5B H51A FAD sing 124 n n C5B H52A FAD sing 125 n n C4B O4B FAD sing 126 n n C4B C3B FAD sing 127 n n C4B H4B FAD sing 128 n n O4B C1B FAD sing 129 n n C3B O3B FAD sing 130 n n C3B C2B FAD sing 131 n n C3B H3B FAD sing 132 n n O3B HO3A FAD sing 133 n n C2B O2B FAD sing 134 n n C2B C1B FAD sing 135 n n C2B H2B FAD sing 136 n n O2B HO2A FAD sing 137 n n C1B N9A FAD sing 138 n n C1B H1B FAD sing 139 n n N9A C8A FAD sing 140 n y N9A C4A FAD sing 141 n y C8A N7A FAD doub 142 n y C8A H8A FAD sing 143 n n N7A C5A FAD sing 144 n y C5A C6A FAD sing 145 n y C5A C4A FAD doub 146 n y C6A N6A FAD sing 147 n n C6A N1A FAD doub 148 n y N6A H61A FAD sing 149 n n N6A H62A FAD sing 150 n n N1A C2A FAD sing 151 n y C2A N3A FAD doub 152 n y C2A H2A FAD sing 153 n n N3A C4A FAD sing 154 n y N1 C2 FAD sing 155 n n N1 C10 FAD doub 156 n n C2 O2 FAD doub 157 n n C2 N3 FAD sing 158 n n N3 C4 FAD sing 159 n n N3 HN3 FAD sing 160 n n C4 O4 FAD doub 161 n n C4 C4X FAD sing 162 n n C4X N5 FAD doub 163 n n C4X C10 FAD sing 164 n n N5 C5X FAD sing 165 n n C5X C6 FAD doub 166 n y C5X C9A FAD sing 167 n y C6 C7 FAD sing 168 n y C6 H6 FAD sing 169 n n C7 C7M FAD sing 170 n n C7 C8 FAD doub 171 n y C7M HM71 FAD sing 172 n n C7M HM72 FAD sing 173 n n C7M HM73 FAD sing 174 n n C8 C8M FAD sing 175 n n C8 C9 FAD sing 176 n y C8M HM81 FAD sing 177 n n C8M HM82 FAD sing 178 n n C8M HM83 FAD sing 179 n n C9 C9A FAD doub 180 n y C9 H9 FAD sing 181 n n C9A N10 FAD sing 182 n n N10 C10 FAD sing 183 n n N10 C1' FAD sing 184 n n C1' C2' FAD sing 185 n n C1' "H1'1" FAD sing 186 n n C1' "H1'2" FAD sing 187 n n C2' O2' FAD sing 188 n n C2' C3' FAD sing 189 n n C2' H2' FAD sing 190 n n O2' HO2' FAD sing 191 n n C3' O3' FAD sing 192 n n C3' C4' FAD sing 193 n n C3' H3' FAD sing 194 n n O3' HO3' FAD sing 195 n n C4' O4' FAD sing 196 n n C4' C5' FAD sing 197 n n C4' H4' FAD sing 198 n n O4' HO4' FAD sing 199 n n C5' O5' FAD sing 200 n n C5' "H5'1" FAD sing 201 n n C5' "H5'2" FAD sing 202 n n O5' P FAD sing 203 n n P O1P FAD doub 204 n n P O2P FAD sing 205 n n P O3P FAD sing 206 n n O2P HOP2 FAD sing 207 n n # _atom_sites.entry_id 1AHZ _atom_sites.fract_transf_matrix[1][1] 0.007094 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007094 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007493 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL A 1 601 601 CL CL . D 3 FAD A 1 600 600 FAD FAD . E 4 EPT A 1 602 602 EPT EPT . F 2 CL B 1 601 601 CL CL . G 3 FAD B 1 600 600 FAD FAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . G 3 97.217 43.069 35.685 1 23.09 ? PA FAD 600 B 1 HETATM 2 O O1A FAD . . . G 3 96.748 42.324 34.485 1 30.18 ? O1A FAD 600 B 1 HETATM 3 O O2A FAD . . . G 3 97.713 44.465 35.512 1 20.93 ? O2A FAD 600 B 1 HETATM 4 O O5B FAD . . . G 3 96.058 43.015 36.808 1 21.39 ? O5B FAD 600 B 1 HETATM 5 C C5B FAD . . . G 3 96.372 43.677 38.031 1 18.68 ? C5B FAD 600 B 1 HETATM 6 C C4B FAD . . . G 3 95.167 43.839 38.942 1 18.1 ? C4B FAD 600 B 1 HETATM 7 O O4B FAD . . . G 3 95.58 44.7 40.032 1 17.63 ? O4B FAD 600 B 1 HETATM 8 C C3B FAD . . . G 3 93.936 44.487 38.309 1 22.68 ? C3B FAD 600 B 1 HETATM 9 O O3B FAD . . . G 3 92.83 43.578 38.369 1 27.08 ? O3B FAD 600 B 1 HETATM 10 C C2B FAD . . . G 3 93.655 45.737 39.145 1 22.39 ? C2B FAD 600 B 1 HETATM 11 O O2B FAD . . . G 3 92.566 45.563 40.032 1 24.16 ? O2B FAD 600 B 1 HETATM 12 C C1B FAD . . . G 3 94.949 45.957 39.92 1 18.6 ? C1B FAD 600 B 1 HETATM 13 N N9A FAD . . . G 3 95.85 46.929 39.298 1 17.95 ? N9A FAD 600 B 1 HETATM 14 C C8A FAD . . . G 3 96.754 46.716 38.293 1 15.83 ? C8A FAD 600 B 1 HETATM 15 N N7A FAD . . . G 3 97.414 47.797 37.939 1 13.58 ? N7A FAD 600 B 1 HETATM 16 C C5A FAD . . . G 3 96.905 48.785 38.767 1 12.39 ? C5A FAD 600 B 1 HETATM 17 C C6A FAD . . . G 3 97.187 50.16 38.895 1 12.39 ? C6A FAD 600 B 1 HETATM 18 N N6A FAD . . . G 3 98.097 50.797 38.154 1 14.16 ? N6A FAD 600 B 1 HETATM 19 N N1A FAD . . . G 3 96.498 50.861 39.818 1 16.09 ? N1A FAD 600 B 1 HETATM 20 C C2A FAD . . . G 3 95.587 50.22 40.56 1 18.28 ? C2A FAD 600 B 1 HETATM 21 N N3A FAD . . . G 3 95.234 48.934 40.534 1 18.47 ? N3A FAD 600 B 1 HETATM 22 C C4A FAD . . . G 3 95.938 48.266 39.608 1 15.69 ? C4A FAD 600 B 1 HETATM 23 N N1 FAD . . . G 3 100.75 35.032 39.627 1 15.19 ? N1 FAD 600 B 1 HETATM 24 C C2 FAD . . . G 3 101.605 35.172 40.631 1 18 ? C2 FAD 600 B 1 HETATM 25 O O2 FAD . . . G 3 101.5 36.13 41.395 1 20.93 ? O2 FAD 600 B 1 HETATM 26 N N3 FAD . . . G 3 102.642 34.273 40.843 1 17.03 ? N3 FAD 600 B 1 HETATM 27 C C4 FAD . . . G 3 102.83 33.179 40.012 1 14.8 ? C4 FAD 600 B 1 HETATM 28 O O4 FAD . . . G 3 103.758 32.402 40.215 1 14.13 ? O4 FAD 600 B 1 HETATM 29 C C4X FAD . . . G 3 101.901 33.035 38.921 1 12.93 ? C4X FAD 600 B 1 HETATM 30 N N5 FAD . . . G 3 101.995 31.954 38.123 1 12.99 ? N5 FAD 600 B 1 HETATM 31 C C5X FAD . . . G 3 101.029 31.763 37.204 1 14.03 ? C5X FAD 600 B 1 HETATM 32 C C6 FAD . . . G 3 101.162 30.653 36.363 1 11.64 ? C6 FAD 600 B 1 HETATM 33 C C7 FAD . . . G 3 100.273 30.475 35.3 1 9 ? C7 FAD 600 B 1 HETATM 34 C C7M FAD . . . G 3 100.442 29.288 34.384 1 7.83 ? C7M FAD 600 B 1 HETATM 35 C C8 FAD . . . G 3 99.217 31.418 35.088 1 9.76 ? C8 FAD 600 B 1 HETATM 36 C C8M FAD . . . G 3 98.251 31.243 33.941 1 7.95 ? C8M FAD 600 B 1 HETATM 37 C C9 FAD . . . G 3 99.075 32.515 35.946 1 10.66 ? C9 FAD 600 B 1 HETATM 38 C C9A FAD . . . G 3 99.963 32.693 37.014 1 11.76 ? C9A FAD 600 B 1 HETATM 39 N N10 FAD . . . G 3 99.897 33.798 37.816 1 13.39 ? N10 FAD 600 B 1 HETATM 40 C C10 FAD . . . G 3 100.851 33.99 38.779 1 14.42 ? C10 FAD 600 B 1 HETATM 41 C C1' FAD . . . G 3 98.77 34.746 37.673 1 14.27 ? C1' FAD 600 B 1 HETATM 42 C C2' FAD . . . G 3 99.135 35.958 36.823 1 17.75 ? C2' FAD 600 B 1 HETATM 43 O O2' FAD . . . G 3 99.666 35.532 35.572 1 23.15 ? O2' FAD 600 B 1 HETATM 44 C C3' FAD . . . G 3 100.135 36.857 37.543 1 17.76 ? C3' FAD 600 B 1 HETATM 45 O O3' FAD . . . G 3 99.701 37.046 38.889 1 21.4 ? O3' FAD 600 B 1 HETATM 46 C C4' FAD . . . G 3 100.26 38.211 36.85 1 11.97 ? C4' FAD 600 B 1 HETATM 47 O O4' FAD . . . G 3 101.285 38.984 37.472 1 8.83 ? O4' FAD 600 B 1 HETATM 48 C C5' FAD . . . G 3 98.941 38.975 36.886 1 13.3 ? C5' FAD 600 B 1 HETATM 49 O O5' FAD . . . G 3 98.84 39.839 35.764 1 15.63 ? O5' FAD 600 B 1 HETATM 50 P P FAD . . . G 3 99.555 41.283 35.739 1 18.78 ? P FAD 600 B 1 HETATM 51 O O1P FAD . . . G 3 100.745 41.261 36.635 1 18.9 ? O1P FAD 600 B 1 HETATM 52 O O2P FAD . . . G 3 99.731 41.714 34.326 1 18.06 ? O2P FAD 600 B 1 HETATM 53 O O3P FAD . . . G 3 98.381 42.193 36.406 1 17.35 ? O3P FAD 600 B 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 53 #