data_1AIC # _model_server_result.job_id 3xiYvMWOuiiuZRDSs43TAA _model_server_result.datetime_utc '2025-08-14 08:39:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1aic # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":411}' # _entry.id 1AIC # _exptl.entry_id 1AIC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 248.173 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 119.1 _cell.angle_gamma 90 _cell.entry_id 1AIC _cell.length_a 87.2 _cell.length_b 79.9 _cell.length_c 89.6 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AIC _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C8 H13 N2 O5 P' _chem_comp.formula_weight 248.173 _chem_comp.id PMP _chem_comp.mon_nstd_flag . _chem_comp.name "4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "PYRIDOXAMINE-5'-PHOSPHATE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PMP doub 258 n y N1 C6 PMP sing 259 n y C2 C2A PMP sing 260 n n C2 C3 PMP sing 261 n y C2A H2A1 PMP sing 262 n n C2A H2A2 PMP sing 263 n n C2A H2A3 PMP sing 264 n n C3 O3 PMP sing 265 n n C3 C4 PMP doub 266 n y O3 HO3 PMP sing 267 n n C4 C4A PMP sing 268 n n C4 C5 PMP sing 269 n y C4A N4A PMP sing 270 n n C4A H4A1 PMP sing 271 n n C4A H4A2 PMP sing 272 n n N4A HNA1 PMP sing 273 n n N4A HNA2 PMP sing 274 n n C5 C6 PMP doub 275 n y C5 C5A PMP sing 276 n n C6 H6 PMP sing 277 n n C5A O4P PMP sing 278 n n C5A H5A1 PMP sing 279 n n C5A H5A2 PMP sing 280 n n O4P P PMP sing 281 n n P O1P PMP doub 282 n n P O2P PMP sing 283 n n P O3P PMP sing 284 n n O2P HOP2 PMP sing 285 n n O3P HOP3 PMP sing 286 n n # _atom_sites.entry_id 1AIC _atom_sites.fract_transf_matrix[1][1] 0.011468 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006383 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012516 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012773 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 412 412 SO4 SO4 . D 2 SO4 A 1 413 412 SO4 SO4 . E 3 PMP A 1 411 411 PMP PMP . F 3 PMP B 1 411 411 PMP PMP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PMP . . . E 3 4.942 27.332 26.607 1 15.49 ? N1 PMP 411 A 1 HETATM 2 C C2 PMP . . . E 3 6.001 26.594 26.208 1 10.56 ? C2 PMP 411 A 1 HETATM 3 C C2A PMP . . . E 3 6.209 25.24 26.793 1 11.84 ? C2A PMP 411 A 1 HETATM 4 C C3 PMP . . . E 3 6.883 27.091 25.292 1 12.06 ? C3 PMP 411 A 1 HETATM 5 O O3 PMP . . . E 3 7.967 26.351 24.961 1 11.29 ? O3 PMP 411 A 1 HETATM 6 C C4 PMP . . . E 3 6.689 28.359 24.746 1 16.94 ? C4 PMP 411 A 1 HETATM 7 C C4A PMP . . . E 3 7.547 28.873 23.772 1 17.36 ? C4A PMP 411 A 1 HETATM 8 N N4A PMP . . . E 3 8.476 29.638 24.092 1 21.95 ? N4A PMP 411 A 1 HETATM 9 C C5 PMP . . . E 3 5.624 29.122 25.188 1 16.1 ? C5 PMP 411 A 1 HETATM 10 C C6 PMP . . . E 3 4.739 28.601 26.1 1 17.62 ? C6 PMP 411 A 1 HETATM 11 C C5A PMP . . . E 3 5.434 30.488 24.642 1 18.73 ? C5A PMP 411 A 1 HETATM 12 O O4P PMP . . . E 3 5.058 30.62 23.389 1 16.99 ? O4P PMP 411 A 1 HETATM 13 P P PMP . . . E 3 4.974 32.069 22.799 1 13.8 ? P PMP 411 A 1 HETATM 14 O O1P PMP . . . E 3 6.289 32.331 22.178 1 12.07 ? O1P PMP 411 A 1 HETATM 15 O O2P PMP . . . E 3 4.433 33.051 23.75 1 16.72 ? O2P PMP 411 A 1 HETATM 16 O O3P PMP . . . E 3 3.85 31.937 21.726 1 10.32 ? O3P PMP 411 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 226 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 16 #