data_1AIC
#
_model_server_result.job_id            zfC9vV2su9sm-PSszxVgIQ 
_model_server_result.datetime_utc      '2025-08-14 08:39:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1aic 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":411}' 
#
_entry.id    1AIC 
#
_exptl.entry_id    1AIC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              248.173 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          119.1 
_cell.angle_gamma         90 
_cell.entry_id            1AIC 
_cell.length_a            87.2 
_cell.length_b            79.9 
_cell.length_c            89.6 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1AIC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
_chem_comp.formula           'C8 H13 N2 O5 P' 
_chem_comp.formula_weight    248.173 
_chem_comp.id                PMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "PYRIDOXAMINE-5'-PHOSPHATE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PMP doub 258 n y 
N1 C6 PMP sing 259 n y 
C2 C2A PMP sing 260 n n 
C2 C3 PMP sing 261 n y 
C2A H2A1 PMP sing 262 n n 
C2A H2A2 PMP sing 263 n n 
C2A H2A3 PMP sing 264 n n 
C3 O3 PMP sing 265 n n 
C3 C4 PMP doub 266 n y 
O3 HO3 PMP sing 267 n n 
C4 C4A PMP sing 268 n n 
C4 C5 PMP sing 269 n y 
C4A N4A PMP sing 270 n n 
C4A H4A1 PMP sing 271 n n 
C4A H4A2 PMP sing 272 n n 
N4A HNA1 PMP sing 273 n n 
N4A HNA2 PMP sing 274 n n 
C5 C6 PMP doub 275 n y 
C5 C5A PMP sing 276 n n 
C6 H6 PMP sing 277 n n 
C5A O4P PMP sing 278 n n 
C5A H5A1 PMP sing 279 n n 
C5A H5A2 PMP sing 280 n n 
O4P P PMP sing 281 n n 
P O1P PMP doub 282 n n 
P O2P PMP sing 283 n n 
P O3P PMP sing 284 n n 
O2P HOP2 PMP sing 285 n n 
O3P HOP3 PMP sing 286 n n 
#
_atom_sites.entry_id                     1AIC 
_atom_sites.fract_transf_matrix[1][1]    0.011468 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006383 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012516 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012773 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 412 412 SO4 SO4 . 
D 2 SO4 A 1 413 412 SO4 SO4 . 
E 3 PMP A 1 411 411 PMP PMP . 
F 3 PMP B 1 411 411 PMP PMP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PMP . . . F 3 -5.053 56.423 26.783 1 11.63 ? N1 PMP 411 B 1 
HETATM 2 C C2 PMP . . . F 3 -6.068 57.223 26.32 1 4.83 ? C2 PMP 411 B 1 
HETATM 3 C C2A PMP . . . F 3 -6.244 58.558 26.901 1 6.57 ? C2A PMP 411 B 1 
HETATM 4 C C3 PMP . . . F 3 -6.919 56.781 25.365 1 6.06 ? C3 PMP 411 B 1 
HETATM 5 O O3 PMP . . . F 3 -7.918 57.605 24.931 1 7.49 ? O3 PMP 411 B 1 
HETATM 6 C C4 PMP . . . F 3 -6.781 55.525 24.834 1 12.01 ? C4 PMP 411 B 1 
HETATM 7 C C4A PMP . . . F 3 -7.602 55.077 23.873 1 16.27 ? C4A PMP 411 B 1 
HETATM 8 N N4A PMP . . . F 3 -8.835 54.528 24.129 1 19.06 ? N4A PMP 411 B 1 
HETATM 9 C C5 PMP . . . F 3 -5.747 54.713 25.296 1 13.98 ? C5 PMP 411 B 1 
HETATM 10 C C6 PMP . . . F 3 -4.882 55.152 26.271 1 12.8 ? C6 PMP 411 B 1 
HETATM 11 C C5A PMP . . . F 3 -5.572 53.352 24.72 1 13.65 ? C5A PMP 411 B 1 
HETATM 12 O O4P PMP . . . F 3 -4.861 53.351 23.567 1 13.52 ? O4P PMP 411 B 1 
HETATM 13 P P PMP . . . F 3 -4.735 52.064 22.728 1 11.35 ? P PMP 411 B 1 
HETATM 14 O O1P PMP . . . F 3 -4.618 50.859 23.538 1 12.19 ? O1P PMP 411 B 1 
HETATM 15 O O2P PMP . . . F 3 -3.58 52.336 21.886 1 16.06 ? O2P PMP 411 B 1 
HETATM 16 O O3P PMP . . . F 3 -6.053 51.966 21.905 1 8.1 ? O3P PMP 411 B 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           343 
_model_server_stats.encode_time_ms          22 
_model_server_stats.element_count           16 
#