data_1AIQ
#
_model_server_result.job_id            jhxp0pb4mEPd3dzH-5Fgnw 
_model_server_result.datetime_utc      '2025-03-05 03:01:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1aiq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":265}' 
#
_entry.id    1AIQ 
#
_exptl.entry_id    1AIQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              308.182 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "2'-DEOXYURIDINE 5'-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1AIQ 
_cell.length_a            126.61 
_cell.length_b            126.61 
_cell.length_c            67.3 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1AIQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 63' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C CXM 1 A CXM 1 1_555 A N LYS 2 A LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
covale ? covale2 A SG CYS 146 A CYS 146 1_555 C C6 UMP . A UMP 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
covale ? covale3 B C CXM 1 B CXM 1 1_555 B N LYS 2 B LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
#
_chem_comp.formula           'C9 H13 N2 O8 P' 
_chem_comp.formula_weight    308.182 
_chem_comp.id                UMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "2'-DEOXYURIDINE 5'-MONOPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     DUMP 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 UMP sing 440 n n 
N1 C6 UMP sing 441 n n 
N1 C1' UMP sing 442 n n 
C2 N3 UMP sing 443 n n 
C2 O2 UMP doub 444 n n 
N3 C4 UMP sing 445 n n 
N3 HN3 UMP sing 446 n n 
C4 C5 UMP sing 447 n n 
C4 O4 UMP doub 448 n n 
C5 C6 UMP doub 449 n n 
C5 H5 UMP sing 450 n n 
C6 H6 UMP sing 451 n n 
C1' C2' UMP sing 452 n n 
C1' O4' UMP sing 453 n n 
C1' H1' UMP sing 454 n n 
C2' C3' UMP sing 455 n n 
C2' H2' UMP sing 456 n n 
C2' "H2''" UMP sing 457 n n 
C3' C4' UMP sing 458 n n 
C3' O3' UMP sing 459 n n 
C3' H3' UMP sing 460 n n 
C4' O4' UMP sing 461 n n 
C4' C5' UMP sing 462 n n 
C4' H4' UMP sing 463 n n 
O3' HO3' UMP sing 464 n n 
C5' O5' UMP sing 465 n n 
C5' H5' UMP sing 466 n n 
C5' "H5''" UMP sing 467 n n 
O5' P UMP sing 468 n n 
P OP1 UMP doub 469 n n 
P OP2 UMP sing 470 n n 
P OP3 UMP sing 471 n n 
OP2 HOP2 UMP sing 472 n n 
OP3 HOP3 UMP sing 473 n n 
#
_atom_sites.entry_id                     1AIQ 
_atom_sites.fract_transf_matrix[1][1]    0.007898 
_atom_sites.fract_transf_matrix[1][2]    0.00456 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00912 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014859 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 UMP A 1 265 265 UMP UMP . 
D 3 CB3 A 1 266 266 CB3 CB3 . 
E 2 UMP B 1 266 266 UMP UMP . 
F 3 CB3 B 1 267 267 CB3 CB3 . 
G 4 HOH A 1 270 270 HOH HOH . 
G 4 HOH A 2 271 271 HOH HOH . 
G 4 HOH A 3 272 272 HOH HOH . 
G 4 HOH A 4 273 273 HOH HOH . 
G 4 HOH A 5 274 274 HOH HOH . 
G 4 HOH A 6 275 275 HOH HOH . 
G 4 HOH A 7 277 277 HOH HOH . 
G 4 HOH A 8 278 278 HOH HOH . 
G 4 HOH A 9 282 282 HOH HOH . 
G 4 HOH A 10 283 283 HOH HOH . 
G 4 HOH A 11 284 284 HOH HOH . 
G 4 HOH A 12 285 285 HOH HOH . 
G 4 HOH A 13 286 286 HOH HOH . 
G 4 HOH A 14 287 287 HOH HOH . 
G 4 HOH A 15 289 289 HOH HOH . 
G 4 HOH A 16 290 290 HOH HOH . 
G 4 HOH A 17 291 291 HOH HOH . 
G 4 HOH A 18 292 292 HOH HOH . 
G 4 HOH A 19 293 293 HOH HOH . 
G 4 HOH A 20 294 294 HOH HOH . 
G 4 HOH A 21 297 297 HOH HOH . 
G 4 HOH A 22 299 299 HOH HOH . 
G 4 HOH A 23 300 300 HOH HOH . 
G 4 HOH A 24 302 302 HOH HOH . 
G 4 HOH A 25 305 305 HOH HOH . 
G 4 HOH A 26 306 306 HOH HOH . 
G 4 HOH A 27 307 307 HOH HOH . 
G 4 HOH A 28 308 308 HOH HOH . 
G 4 HOH A 29 309 309 HOH HOH . 
G 4 HOH A 30 311 311 HOH HOH . 
G 4 HOH A 31 313 313 HOH HOH . 
G 4 HOH A 32 314 314 HOH HOH . 
G 4 HOH A 33 315 315 HOH HOH . 
G 4 HOH A 34 316 316 HOH HOH . 
G 4 HOH A 35 317 317 HOH HOH . 
G 4 HOH A 36 318 318 HOH HOH . 
G 4 HOH A 37 319 319 HOH HOH . 
G 4 HOH A 38 320 320 HOH HOH . 
G 4 HOH A 39 321 321 HOH HOH . 
G 4 HOH A 40 322 322 HOH HOH . 
G 4 HOH A 41 324 324 HOH HOH . 
G 4 HOH A 42 325 325 HOH HOH . 
G 4 HOH A 43 326 326 HOH HOH . 
G 4 HOH A 44 327 327 HOH HOH . 
G 4 HOH A 45 328 328 HOH HOH . 
G 4 HOH A 46 329 329 HOH HOH . 
G 4 HOH A 47 330 330 HOH HOH . 
G 4 HOH A 48 332 332 HOH HOH . 
G 4 HOH A 49 333 333 HOH HOH . 
G 4 HOH A 50 334 334 HOH HOH . 
G 4 HOH A 51 335 335 HOH HOH . 
G 4 HOH A 52 336 336 HOH HOH . 
G 4 HOH A 53 337 337 HOH HOH . 
G 4 HOH A 54 338 338 HOH HOH . 
G 4 HOH A 55 343 343 HOH HOH . 
G 4 HOH A 56 344 344 HOH HOH . 
G 4 HOH A 57 347 347 HOH HOH . 
G 4 HOH A 58 354 354 HOH HOH . 
G 4 HOH A 59 358 358 HOH HOH . 
G 4 HOH A 60 359 359 HOH HOH . 
G 4 HOH A 61 363 363 HOH HOH . 
G 4 HOH A 62 366 366 HOH HOH . 
G 4 HOH A 63 373 373 HOH HOH . 
G 4 HOH A 64 374 374 HOH HOH . 
G 4 HOH A 65 375 375 HOH HOH . 
G 4 HOH A 66 376 376 HOH HOH . 
G 4 HOH A 67 379 379 HOH HOH . 
G 4 HOH A 68 383 383 HOH HOH . 
G 4 HOH A 69 384 384 HOH HOH . 
G 4 HOH A 70 385 385 HOH HOH . 
G 4 HOH A 71 386 386 HOH HOH . 
G 4 HOH A 72 387 387 HOH HOH . 
G 4 HOH A 73 388 388 HOH HOH . 
G 4 HOH A 74 389 389 HOH HOH . 
G 4 HOH A 75 390 390 HOH HOH . 
G 4 HOH A 76 391 391 HOH HOH . 
G 4 HOH A 77 392 392 HOH HOH . 
G 4 HOH A 78 393 393 HOH HOH . 
G 4 HOH A 79 394 394 HOH HOH . 
G 4 HOH A 80 395 395 HOH HOH . 
G 4 HOH A 81 396 396 HOH HOH . 
G 4 HOH A 82 398 398 HOH HOH . 
G 4 HOH A 83 403 403 HOH HOH . 
G 4 HOH A 84 405 405 HOH HOH . 
G 4 HOH A 85 406 406 HOH HOH . 
G 4 HOH A 86 407 407 HOH HOH . 
G 4 HOH A 87 408 408 HOH HOH . 
G 4 HOH A 88 409 409 HOH HOH . 
G 4 HOH A 89 411 411 HOH HOH . 
G 4 HOH A 90 412 412 HOH HOH . 
G 4 HOH A 91 413 413 HOH HOH . 
G 4 HOH A 92 415 415 HOH HOH . 
G 4 HOH A 93 417 417 HOH HOH . 
G 4 HOH A 94 418 418 HOH HOH . 
G 4 HOH A 95 419 419 HOH HOH . 
G 4 HOH A 96 420 420 HOH HOH . 
G 4 HOH A 97 421 421 HOH HOH . 
G 4 HOH A 98 425 425 HOH HOH . 
G 4 HOH A 99 426 426 HOH HOH . 
G 4 HOH A 100 427 427 HOH HOH . 
G 4 HOH A 101 430 430 HOH HOH . 
G 4 HOH A 102 431 431 HOH HOH . 
G 4 HOH A 103 432 432 HOH HOH . 
G 4 HOH A 104 433 433 HOH HOH . 
G 4 HOH A 105 434 434 HOH HOH . 
G 4 HOH A 106 436 436 HOH HOH . 
G 4 HOH A 107 437 437 HOH HOH . 
G 4 HOH A 108 438 438 HOH HOH . 
G 4 HOH A 109 439 439 HOH HOH . 
G 4 HOH A 110 440 440 HOH HOH . 
G 4 HOH A 111 441 441 HOH HOH . 
G 4 HOH A 112 442 442 HOH HOH . 
G 4 HOH A 113 443 443 HOH HOH . 
H 4 HOH B 1 268 268 HOH HOH . 
H 4 HOH B 2 269 269 HOH HOH . 
H 4 HOH B 3 276 276 HOH HOH . 
H 4 HOH B 4 279 279 HOH HOH . 
H 4 HOH B 5 280 280 HOH HOH . 
H 4 HOH B 6 281 281 HOH HOH . 
H 4 HOH B 7 288 288 HOH HOH . 
H 4 HOH B 8 295 295 HOH HOH . 
H 4 HOH B 9 296 296 HOH HOH . 
H 4 HOH B 10 298 298 HOH HOH . 
H 4 HOH B 11 301 301 HOH HOH . 
H 4 HOH B 12 303 303 HOH HOH . 
H 4 HOH B 13 304 304 HOH HOH . 
H 4 HOH B 14 310 310 HOH HOH . 
H 4 HOH B 15 312 312 HOH HOH . 
H 4 HOH B 16 323 323 HOH HOH . 
H 4 HOH B 17 331 331 HOH HOH . 
H 4 HOH B 18 339 339 HOH HOH . 
H 4 HOH B 19 340 340 HOH HOH . 
H 4 HOH B 20 341 341 HOH HOH . 
H 4 HOH B 21 342 342 HOH HOH . 
H 4 HOH B 22 345 345 HOH HOH . 
H 4 HOH B 23 346 346 HOH HOH . 
H 4 HOH B 24 348 348 HOH HOH . 
H 4 HOH B 25 349 349 HOH HOH . 
H 4 HOH B 26 350 350 HOH HOH . 
H 4 HOH B 27 351 351 HOH HOH . 
H 4 HOH B 28 352 352 HOH HOH . 
H 4 HOH B 29 353 353 HOH HOH . 
H 4 HOH B 30 355 355 HOH HOH . 
H 4 HOH B 31 356 356 HOH HOH . 
H 4 HOH B 32 357 357 HOH HOH . 
H 4 HOH B 33 360 360 HOH HOH . 
H 4 HOH B 34 361 361 HOH HOH . 
H 4 HOH B 35 362 362 HOH HOH . 
H 4 HOH B 36 364 364 HOH HOH . 
H 4 HOH B 37 365 365 HOH HOH . 
H 4 HOH B 38 367 367 HOH HOH . 
H 4 HOH B 39 368 368 HOH HOH . 
H 4 HOH B 40 369 369 HOH HOH . 
H 4 HOH B 41 370 370 HOH HOH . 
H 4 HOH B 42 371 371 HOH HOH . 
H 4 HOH B 43 372 372 HOH HOH . 
H 4 HOH B 44 377 377 HOH HOH . 
H 4 HOH B 45 378 378 HOH HOH . 
H 4 HOH B 46 380 380 HOH HOH . 
H 4 HOH B 47 381 381 HOH HOH . 
H 4 HOH B 48 382 382 HOH HOH . 
H 4 HOH B 49 397 397 HOH HOH . 
H 4 HOH B 50 399 399 HOH HOH . 
H 4 HOH B 51 400 400 HOH HOH . 
H 4 HOH B 52 401 401 HOH HOH . 
H 4 HOH B 53 402 402 HOH HOH . 
H 4 HOH B 54 404 404 HOH HOH . 
H 4 HOH B 55 410 410 HOH HOH . 
H 4 HOH B 56 414 414 HOH HOH . 
H 4 HOH B 57 416 416 HOH HOH . 
H 4 HOH B 58 422 422 HOH HOH . 
H 4 HOH B 59 423 423 HOH HOH . 
H 4 HOH B 60 424 424 HOH HOH . 
H 4 HOH B 61 428 428 HOH HOH . 
H 4 HOH B 62 429 429 HOH HOH . 
H 4 HOH B 63 435 435 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 UMP . . . C 2 17.227 19.981 31.177 1 31.4 ? N1 UMP 265 A 1 
HETATM 2 C C2 UMP . . . C 2 18.121 19.823 32.256 1 38.78 ? C2 UMP 265 A 1 
HETATM 3 N N3 UMP . . . C 2 19.044 18.846 32.203 1 24.03 ? N3 UMP 265 A 1 
HETATM 4 C C4 UMP . . . C 2 19.229 17.916 31.209 1 57.65 ? C4 UMP 265 A 1 
HETATM 5 C C5 UMP . . . C 2 18.295 18.09 30.138 1 26.63 ? C5 UMP 265 A 1 
HETATM 6 C C6 UMP . . . C 2 17.608 19.29 30.121 1 36.06 ? C6 UMP 265 A 1 
HETATM 7 O O2 UMP . . . C 2 18.176 20.511 33.272 1 20.03 ? O2 UMP 265 A 1 
HETATM 8 O O4 UMP . . . C 2 20.075 17.034 31.202 1 28.9 ? O4 UMP 265 A 1 
HETATM 9 C C1' UMP . . . C 2 16.197 20.992 31.104 1 39.58 ? C1' UMP 265 A 1 
HETATM 10 C C2' UMP . . . C 2 16.638 22.418 30.745 1 21.67 ? C2' UMP 265 A 1 
HETATM 11 C C3' UMP . . . C 2 15.275 22.982 30.291 1 61.51 ? C3' UMP 265 A 1 
HETATM 12 C C4' UMP . . . C 2 14.773 21.901 29.304 1 51.75 ? C4' UMP 265 A 1 
HETATM 13 O O3' UMP . . . C 2 14.377 23.207 31.364 1 24.77 ? O3' UMP 265 A 1 
HETATM 14 O O4' UMP . . . C 2 15.12 20.675 30.133 1 39.18 ? O4' UMP 265 A 1 
HETATM 15 C C5' UMP . . . C 2 15.15 21.831 27.878 1 36.31 ? C5' UMP 265 A 1 
HETATM 16 O O5' UMP . . . C 2 14.451 22.469 26.857 1 100 ? O5' UMP 265 A 1 
HETATM 17 P P UMP . . . C 2 14.832 23.634 25.826 1 89.94 ? P UMP 265 A 1 
HETATM 18 O OP1 UMP . . . C 2 13.451 24.214 25.473 1 88.68 ? OP1 UMP 265 A 1 
HETATM 19 O OP2 UMP . . . C 2 15.727 24.588 26.617 1 77.99 ? OP2 UMP 265 A 1 
HETATM 20 O OP3 UMP . . . C 2 15.497 23.108 24.591 1 32.59 ? OP3 UMP 265 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           1156 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           20 
#