data_1AJ6 # _model_server_result.job_id 1kkS4agyCa9FJcg8D1mopw _model_server_result.datetime_utc '2024-11-21 17:49:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1aj6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 1AJ6 # _exptl.entry_id 1AJ6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 612.624 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NOVOBIOCIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1AJ6 _cell.length_a 39.5 _cell.length_b 47.72 _cell.length_c 114.41 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AJ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C31 H36 N2 O11' _chem_comp.formula_weight 612.624 _chem_comp.id NOV _chem_comp.mon_nstd_flag . _chem_comp.name NOVOBIOCIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '4-Hydroxy-3-[4-hydroxy-3-(3-methylbut-2-enyl)benzamido]-8-methylcoumarin-7-yl 3-O-carbamoyl-5,5-di-C-methyl-alpha-l-lyxofuranoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 NOV sing 237 n n C1 H11A NOV sing 238 n n C1 H12 NOV sing 239 n n C1 H13 NOV sing 240 n n O1 C27 NOV sing 241 n n N1 C12 NOV sing 242 n n N1 HN11 NOV sing 243 n n N1 HN12 NOV sing 244 n n C12 O4 NOV doub 245 n n C12 O5 NOV sing 246 n n O5 C28 NOV sing 247 n n C27 C28 NOV sing 248 n n C27 C31 NOV sing 249 n n C27 H27 NOV sing 250 n n C28 C29 NOV sing 251 n n C28 H28 NOV sing 252 n n C29 O6 NOV sing 253 n n C29 C30 NOV sing 254 n n C29 H29 NOV sing 255 n n O6 HO6 NOV sing 256 n n C30 O7 NOV sing 257 n n C30 O8 NOV sing 258 n n C30 H30 NOV sing 259 n n O7 C31 NOV sing 260 n n C31 C23 NOV sing 261 n n C31 C26 NOV sing 262 n n C23 H231 NOV sing 263 n n C23 H232 NOV sing 264 n n C23 H233 NOV sing 265 n n C26 H261 NOV sing 266 n n C26 H262 NOV sing 267 n n C26 H263 NOV sing 268 n n O8 C3 NOV sing 269 n n C3 C4 NOV doub 270 n y C3 C11 NOV sing 271 n y C4 C2 NOV sing 272 n n C4 C5 NOV sing 273 n y C2 H21A NOV sing 274 n n C2 H22 NOV sing 275 n n C2 H23 NOV sing 276 n n C5 C9 NOV doub 277 n y C5 O10 NOV sing 278 n n C9 C10 NOV sing 279 n y C9 C8 NOV sing 280 n n C10 C11 NOV doub 281 n y C10 H10 NOV sing 282 n n C11 H11 NOV sing 283 n n O10 C6 NOV sing 284 n n C6 O11 NOV doub 285 n n C6 C7 NOV sing 286 n n C7 C8 NOV doub 287 n n C7 N2 NOV sing 288 n n C8 O9 NOV sing 289 n n O9 HO9 NOV sing 290 n n N2 C13 NOV sing 291 n n N2 HN2 NOV sing 292 n n C13 O2 NOV doub 293 n n C13 C14 NOV sing 294 n n C14 C15 NOV doub 295 n y C14 C19 NOV sing 296 n y C15 C16 NOV sing 297 n y C15 H15 NOV sing 298 n n C16 C17 NOV doub 299 n y C16 C20 NOV sing 300 n n C17 O3 NOV sing 301 n n C17 C18 NOV sing 302 n y O3 HO3 NOV sing 303 n n C18 C19 NOV doub 304 n y C18 H18 NOV sing 305 n n C19 H19 NOV sing 306 n n C20 C21 NOV sing 307 n n C20 H201 NOV sing 308 n n C20 H202 NOV sing 309 n n C21 C22 NOV doub 310 n n C21 H21 NOV sing 311 n n C22 C24 NOV sing 312 n n C22 C25 NOV sing 313 n n C24 H241 NOV sing 314 n n C24 H242 NOV sing 315 n n C24 H243 NOV sing 316 n n C25 H251 NOV sing 317 n n C25 H252 NOV sing 318 n n C25 H253 NOV sing 319 n n # _atom_sites.entry_id 1AJ6 _atom_sites.fract_transf_matrix[1][1] 0.025316 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020956 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00874 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NOV A 1 1 1 NOV NOV . C 3 HOH A 1 221 1 HOH HOH . C 3 HOH A 2 222 2 HOH HOH . C 3 HOH A 3 223 3 HOH HOH . C 3 HOH A 4 224 4 HOH HOH . C 3 HOH A 5 225 5 HOH HOH . C 3 HOH A 6 226 6 HOH HOH . C 3 HOH A 7 227 7 HOH HOH . C 3 HOH A 8 228 8 HOH HOH . C 3 HOH A 9 229 10 HOH HOH . C 3 HOH A 10 230 11 HOH HOH . C 3 HOH A 11 231 12 HOH HOH . C 3 HOH A 12 232 13 HOH HOH . C 3 HOH A 13 233 14 HOH HOH . C 3 HOH A 14 234 15 HOH HOH . C 3 HOH A 15 235 16 HOH HOH . C 3 HOH A 16 236 17 HOH HOH . C 3 HOH A 17 237 18 HOH HOH . C 3 HOH A 18 238 19 HOH HOH . C 3 HOH A 19 239 20 HOH HOH . C 3 HOH A 20 240 21 HOH HOH . C 3 HOH A 21 241 23 HOH HOH . C 3 HOH A 22 242 24 HOH HOH . C 3 HOH A 23 243 25 HOH HOH . C 3 HOH A 24 244 26 HOH HOH . C 3 HOH A 25 245 28 HOH HOH . C 3 HOH A 26 246 29 HOH HOH . C 3 HOH A 27 247 31 HOH HOH . C 3 HOH A 28 248 32 HOH HOH . C 3 HOH A 29 249 33 HOH HOH . C 3 HOH A 30 250 34 HOH HOH . C 3 HOH A 31 251 35 HOH HOH . C 3 HOH A 32 252 36 HOH HOH . C 3 HOH A 33 253 37 HOH HOH . C 3 HOH A 34 254 38 HOH HOH . C 3 HOH A 35 255 39 HOH HOH . C 3 HOH A 36 256 41 HOH HOH . C 3 HOH A 37 257 42 HOH HOH . C 3 HOH A 38 258 44 HOH HOH . C 3 HOH A 39 259 45 HOH HOH . C 3 HOH A 40 260 46 HOH HOH . C 3 HOH A 41 261 47 HOH HOH . C 3 HOH A 42 262 48 HOH HOH . C 3 HOH A 43 263 49 HOH HOH . C 3 HOH A 44 264 52 HOH HOH . C 3 HOH A 45 265 53 HOH HOH . C 3 HOH A 46 266 54 HOH HOH . C 3 HOH A 47 267 55 HOH HOH . C 3 HOH A 48 268 56 HOH HOH . C 3 HOH A 49 269 58 HOH HOH . C 3 HOH A 50 270 59 HOH HOH . C 3 HOH A 51 271 61 HOH HOH . C 3 HOH A 52 272 62 HOH HOH . C 3 HOH A 53 273 63 HOH HOH . C 3 HOH A 54 274 64 HOH HOH . C 3 HOH A 55 275 65 HOH HOH . C 3 HOH A 56 276 66 HOH HOH . C 3 HOH A 57 277 68 HOH HOH . C 3 HOH A 58 278 70 HOH HOH . C 3 HOH A 59 279 71 HOH HOH . C 3 HOH A 60 280 72 HOH HOH . C 3 HOH A 61 281 73 HOH HOH . C 3 HOH A 62 282 74 HOH HOH . C 3 HOH A 63 283 75 HOH HOH . C 3 HOH A 64 284 76 HOH HOH . C 3 HOH A 65 285 77 HOH HOH . C 3 HOH A 66 286 78 HOH HOH . C 3 HOH A 67 287 79 HOH HOH . C 3 HOH A 68 288 80 HOH HOH . C 3 HOH A 69 289 81 HOH HOH . C 3 HOH A 70 290 82 HOH HOH . C 3 HOH A 71 291 83 HOH HOH . C 3 HOH A 72 292 84 HOH HOH . C 3 HOH A 73 293 85 HOH HOH . C 3 HOH A 74 294 86 HOH HOH . C 3 HOH A 75 295 88 HOH HOH . C 3 HOH A 76 296 89 HOH HOH . C 3 HOH A 77 297 90 HOH HOH . C 3 HOH A 78 298 92 HOH HOH . C 3 HOH A 79 299 93 HOH HOH . C 3 HOH A 80 300 94 HOH HOH . C 3 HOH A 81 301 95 HOH HOH . C 3 HOH A 82 302 96 HOH HOH . C 3 HOH A 83 303 97 HOH HOH . C 3 HOH A 84 304 98 HOH HOH . C 3 HOH A 85 305 99 HOH HOH . C 3 HOH A 86 306 100 HOH HOH . C 3 HOH A 87 307 101 HOH HOH . C 3 HOH A 88 308 102 HOH HOH . C 3 HOH A 89 309 103 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NOV . . . B 2 60.208 -1.177 37.838 1 8.94 ? C1 NOV 1 A 1 HETATM 2 O O1 NOV . . . B 2 60.309 -2.425 37.138 1 17.79 ? O1 NOV 1 A 1 HETATM 3 N N1 NOV . . . B 2 58.487 -3.022 41.378 1 13.82 ? N1 NOV 1 A 1 HETATM 4 C C12 NOV . . . B 2 58.544 -3.804 40.332 1 12.46 ? C12 NOV 1 A 1 HETATM 5 O O4 NOV . . . B 2 58.706 -4.986 40.406 1 18.73 ? O4 NOV 1 A 1 HETATM 6 O O5 NOV . . . B 2 58.45 -3.164 39.196 1 7.69 ? O5 NOV 1 A 1 HETATM 7 C C27 NOV . . . B 2 59.025 -2.985 36.835 1 7.54 ? C27 NOV 1 A 1 HETATM 8 C C28 NOV . . . B 2 58.587 -3.919 37.957 1 10.88 ? C28 NOV 1 A 1 HETATM 9 C C29 NOV . . . B 2 57.181 -4.381 37.605 1 10.41 ? C29 NOV 1 A 1 HETATM 10 O O6 NOV . . . B 2 56.295 -3.281 37.757 1 7.49 ? O6 NOV 1 A 1 HETATM 11 C C30 NOV . . . B 2 57.198 -5.074 36.249 1 10.72 ? C30 NOV 1 A 1 HETATM 12 O O7 NOV . . . B 2 57.702 -4.255 35.185 1 8.62 ? O7 NOV 1 A 1 HETATM 13 C C31 NOV . . . B 2 58.931 -3.577 35.401 1 8.42 ? C31 NOV 1 A 1 HETATM 14 C C23 NOV . . . B 2 60.134 -4.517 35.15 1 3.62 ? C23 NOV 1 A 1 HETATM 15 C C26 NOV . . . B 2 58.88 -2.41 34.374 1 1.34 ? C26 NOV 1 A 1 HETATM 16 O O8 NOV . . . B 2 58.113 -6.107 36.516 1 17.48 ? O8 NOV 1 A 1 HETATM 17 C C3 NOV . . . B 2 58.237 -7.159 35.625 1 16.96 ? C3 NOV 1 A 1 HETATM 18 C C4 NOV . . . B 2 59.009 -8.19 36.154 1 15.37 ? C4 NOV 1 A 1 HETATM 19 C C2 NOV . . . B 2 59.618 -8.18 37.496 1 11.68 ? C2 NOV 1 A 1 HETATM 20 C C5 NOV . . . B 2 59.165 -9.313 35.425 1 19.45 ? C5 NOV 1 A 1 HETATM 21 C C9 NOV . . . B 2 58.637 -9.434 34.125 1 19.44 ? C9 NOV 1 A 1 HETATM 22 C C10 NOV . . . B 2 57.799 -8.431 33.599 1 8.06 ? C10 NOV 1 A 1 HETATM 23 C C11 NOV . . . B 2 57.58 -7.284 34.371 1 5.58 ? C11 NOV 1 A 1 HETATM 24 O O10 NOV . . . B 2 59.96 -10.295 36.039 1 21.69 ? O10 NOV 1 A 1 HETATM 25 C C6 NOV . . . B 2 60.271 -11.385 35.362 1 21 ? C6 NOV 1 A 1 HETATM 26 O O11 NOV . . . B 2 61.022 -12.203 35.797 1 24.59 ? O11 NOV 1 A 1 HETATM 27 C C7 NOV . . . B 2 59.73 -11.588 33.996 1 13.43 ? C7 NOV 1 A 1 HETATM 28 C C8 NOV . . . B 2 58.964 -10.672 33.396 1 13.74 ? C8 NOV 1 A 1 HETATM 29 O O9 NOV . . . B 2 58.503 -10.879 32.147 1 19.95 ? O9 NOV 1 A 1 HETATM 30 N N2 NOV . . . B 2 59.972 -12.874 33.374 1 17.42 ? N2 NOV 1 A 1 HETATM 31 C C13 NOV . . . B 2 60.964 -13.271 32.562 1 21.38 ? C13 NOV 1 A 1 HETATM 32 O O2 NOV . . . B 2 60.938 -14.412 32.177 1 24.29 ? O2 NOV 1 A 1 HETATM 33 C C14 NOV . . . B 2 62.044 -12.409 32.093 1 19.69 ? C14 NOV 1 A 1 HETATM 34 C C15 NOV . . . B 2 61.786 -11.175 31.463 1 20.88 ? C15 NOV 1 A 1 HETATM 35 C C16 NOV . . . B 2 62.88 -10.436 30.982 1 13.47 ? C16 NOV 1 A 1 HETATM 36 C C17 NOV . . . B 2 64.175 -10.913 31.17 1 17.92 ? C17 NOV 1 A 1 HETATM 37 O O3 NOV . . . B 2 65.239 -10.176 30.719 1 16.64 ? O3 NOV 1 A 1 HETATM 38 C C18 NOV . . . B 2 64.434 -12.148 31.798 1 23.09 ? C18 NOV 1 A 1 HETATM 39 C C19 NOV . . . B 2 63.342 -12.903 32.251 1 21.22 ? C19 NOV 1 A 1 HETATM 40 C C20 NOV . . . B 2 62.694 -9.081 30.349 1 16.2 ? C20 NOV 1 A 1 HETATM 41 C C21 NOV . . . B 2 62.796 -7.897 31.292 1 13.64 ? C21 NOV 1 A 1 HETATM 42 C C22 NOV . . . B 2 61.812 -7.062 31.682 1 11.56 ? C22 NOV 1 A 1 HETATM 43 C C24 NOV . . . B 2 62.052 -5.926 32.654 1 20.49 ? C24 NOV 1 A 1 HETATM 44 C C25 NOV . . . B 2 60.398 -7.148 31.199 1 3.37 ? C25 NOV 1 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 1042 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 44 #