data_1AJ7 # _model_server_result.job_id 6Z_aTlG-_XypA1dL0dLXgQ _model_server_result.datetime_utc '2024-11-02 04:29:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1aj7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":217}' # _entry.id 1AJ7 # _exptl.entry_id 1AJ7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 302.197 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-(PARA-NITROPHENYL PHOSPHONATE)-PENTANOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.8 _cell.angle_gamma 90 _cell.entry_id 1AJ7 _cell.length_a 46.1 _cell.length_b 60.9 _cell.length_c 73.1 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AJ7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 134 L CYS 134 1_555 A SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 214 L CYS 214 1_555 B SG CYS 217 H CYS 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 B SG CYS 141 H CYS 140 1_555 B SG CYS 197 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C11 H13 N O7 P -1' _chem_comp.formula_weight 302.197 _chem_comp.id NPE _chem_comp.mon_nstd_flag . _chem_comp.name '5-(PARA-NITROPHENYL PHOSPHONATE)-PENTANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N1 NPE sing 235 n n C1 C2 NPE doub 236 n y C1 C6 NPE sing 237 n y N1 O1N NPE sing 238 n n N1 O2N NPE doub 239 n n C2 C3 NPE sing 240 n y C2 H2 NPE sing 241 n n C3 C4 NPE doub 242 n y C3 H3 NPE sing 243 n n C4 C5 NPE sing 244 n y C4 O3P NPE sing 245 n n C5 C6 NPE doub 246 n y C5 H5 NPE sing 247 n n C6 H6 NPE sing 248 n n O3P P NPE sing 249 n n P O1P NPE doub 250 n n P O2P NPE sing 251 n n P C7 NPE sing 252 n n C7 C8 NPE sing 253 n n C7 H71 NPE sing 254 n n C7 H72 NPE sing 255 n n C8 C9 NPE sing 256 n n C8 H81 NPE sing 257 n n C8 H82 NPE sing 258 n n C9 C10 NPE sing 259 n n C9 H91 NPE sing 260 n n C9 H92 NPE sing 261 n n C10 C11 NPE sing 262 n n C10 H101 NPE sing 263 n n C10 H102 NPE sing 264 n n C11 O1 NPE doub 265 n n C11 O2 NPE sing 266 n n O2 HO2 NPE sing 267 n n # _atom_sites.entry_id 1AJ7 _atom_sites.fract_transf_matrix[1][1] 0.021692 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005731 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01642 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014149 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id NPE _pdbx_nonpoly_scheme.pdb_strand_id H _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 217 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id NPE _pdbx_nonpoly_scheme.auth_mon_id NPE _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NPE . . . C 3 18.296 6.142 32.72 1 46.9 ? C1 NPE 217 H 1 HETATM 2 N N1 NPE . . . C 3 18.759 5.454 31.548 1 49.42 ? N1 NPE 217 H 1 HETATM 3 O O1N NPE . . . C 3 19.552 6.18 30.64 1 50.42 ? O1N NPE 217 H 1 HETATM 4 O O2N NPE . . . C 3 18.384 4.106 31.417 1 52.3 ? O2N NPE 217 H 1 HETATM 5 C C2 NPE . . . C 3 18.645 7.508 32.932 1 44.83 ? C2 NPE 217 H 1 HETATM 6 C C3 NPE . . . C 3 18.199 8.185 34.087 1 42.37 ? C3 NPE 217 H 1 HETATM 7 C C4 NPE . . . C 3 17.408 7.501 35.037 1 40.45 ? C4 NPE 217 H 1 HETATM 8 C C5 NPE . . . C 3 17.052 6.146 34.833 1 42.25 ? C5 NPE 217 H 1 HETATM 9 C C6 NPE . . . C 3 17.493 5.46 33.684 1 44.29 ? C6 NPE 217 H 1 HETATM 10 O O3P NPE . . . C 3 17.022 8.154 36.228 1 34.9 ? O3P NPE 217 H 1 HETATM 11 P P NPE . . . C 3 17.881 7.959 37.482 1 30.14 ? P NPE 217 H 1 HETATM 12 O O1P NPE . . . C 3 19.078 8.709 37.257 1 29.96 ? O1P NPE 217 H 1 HETATM 13 O O2P NPE . . . C 3 18.301 6.596 37.509 1 29.45 ? O2P NPE 217 H 1 HETATM 14 C C7 NPE . . . C 3 17.079 8.408 39.027 1 31.67 ? C7 NPE 217 H 1 HETATM 15 C C8 NPE . . . C 3 17.907 7.865 40.191 1 30.44 ? C8 NPE 217 H 1 HETATM 16 C C9 NPE . . . C 3 17.27 8 41.582 1 30.21 ? C9 NPE 217 H 1 HETATM 17 C C10 NPE . . . C 3 16.721 6.645 42.053 1 27.27 ? C10 NPE 217 H 1 HETATM 18 C C11 NPE . . . C 3 17.322 6.092 43.342 1 23.41 ? C11 NPE 217 H 1 HETATM 19 O O1 NPE . . . C 3 18.043 5.151 43.437 1 20.38 ? O1 NPE 217 H 1 HETATM 20 O O2 NPE . . . C 3 16.901 6.846 44.375 1 26.97 ? O2 NPE 217 H 1 HETATM 21 H H2 NPE . . . C 3 19.3 8.008 32.245 0 0 ? H2 NPE 217 H 1 HETATM 22 H H3 NPE . . . C 3 18.782 9.023 34.421 0 0 ? H3 NPE 217 H 1 HETATM 23 H H5 NPE . . . C 3 16.328 5.684 35.474 0 0 ? H5 NPE 217 H 1 HETATM 24 H H6 NPE . . . C 3 17.034 4.524 33.429 0 0 ? H6 NPE 217 H 1 HETATM 25 H H71 NPE . . . C 3 16.084 7.989 39.056 0 0 ? H71 NPE 217 H 1 HETATM 26 H H72 NPE . . . C 3 17.022 9.483 39.099 0 0 ? H72 NPE 217 H 1 HETATM 27 H H81 NPE . . . C 3 18.853 8.387 40.194 0 0 ? H81 NPE 217 H 1 HETATM 28 H H82 NPE . . . C 3 18.093 6.817 40.001 0 0 ? H82 NPE 217 H 1 HETATM 29 H H91 NPE . . . C 3 16.462 8.718 41.549 0 0 ? H91 NPE 217 H 1 HETATM 30 H H92 NPE . . . C 3 18.01 8.336 42.292 0 0 ? H92 NPE 217 H 1 HETATM 31 H H101 NPE . . . C 3 16.834 5.914 41.268 0 0 ? H101 NPE 217 H 1 HETATM 32 H H102 NPE . . . C 3 15.672 6.785 42.25 0 0 ? H102 NPE 217 H 1 # _model_server_stats.io_time_ms 76 _model_server_stats.parse_time_ms 43 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 32 #