data_1AJD # _model_server_result.job_id F6GtUmPcY998almwh96jIQ _model_server_result.datetime_utc '2025-03-02 23:44:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ajd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":950}' # _entry.id 1AJD # _exptl.entry_id 1AJD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1AJD _cell.length_a 195.02 _cell.length_b 166.93 _cell.length_c 76.44 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AJD _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 168 A CYS 168 1_555 A SG CYS 178 A CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf2 A SG CYS 286 A CYS 286 1_555 A SG CYS 336 A CYS 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 B SG CYS 168 B CYS 168 1_555 B SG CYS 178 B CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 286 B CYS 286 1_555 B SG CYS 336 B CYS 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 A OD1 ASP 51 A ASP 51 1_555 D ZN ZN . A ZN 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc2 A OD2 ASP 51 A ASP 51 1_555 E MG MG . A MG 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc3 A OG SER 102 A SER 102 1_555 D ZN ZN . A ZN 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc4 A OG1 THR 155 A THR 155 1_555 E MG MG . A MG 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc5 A OE2 GLU 322 A GLU 322 1_555 E MG MG . A MG 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc6 A OD1 ASP 327 A ASP 327 1_555 C ZN ZN . A ZN 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc7 A OD2 ASP 327 A ASP 327 1_555 C ZN ZN . A ZN 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc8 A NE2 HIS 331 A HIS 331 1_555 C ZN ZN . A ZN 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc9 A OD2 ASP 369 A ASP 369 1_555 D ZN ZN . A ZN 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc10 A NE2 HIS 370 A HIS 370 1_555 D ZN ZN . A ZN 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc11 A NE2 HIS 412 A HIS 412 1_555 C ZN ZN . A ZN 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.897 ? metalc ? metalc12 E MG MG . A MG 452 1_555 I O HOH . A HOH 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? metalc ? metalc13 E MG MG . A MG 452 1_555 I O HOH . A HOH 456 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc14 B OD1 ASP 51 B ASP 51 1_555 G ZN ZN . B ZN 951 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.882 ? metalc ? metalc15 B OD2 ASP 51 B ASP 51 1_555 H MG MG . B MG 952 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc16 B OG SER 102 B SER 102 1_555 G ZN ZN . B ZN 951 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc17 B OG1 THR 155 B THR 155 1_555 H MG MG . B MG 952 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc18 B OE2 GLU 322 B GLU 322 1_555 H MG MG . B MG 952 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc19 B OD1 ASP 327 B ASP 327 1_555 F ZN ZN . B ZN 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc20 B OD2 ASP 327 B ASP 327 1_555 F ZN ZN . B ZN 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc21 B NE2 HIS 331 B HIS 331 1_555 F ZN ZN . B ZN 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc22 B OD2 ASP 369 B ASP 369 1_555 G ZN ZN . B ZN 951 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc23 B NE2 HIS 370 B HIS 370 1_555 G ZN ZN . B ZN 951 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? metalc ? metalc24 B NE2 HIS 412 B HIS 412 1_555 F ZN ZN . B ZN 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc25 H MG MG . B MG 952 1_555 J O HOH . B HOH 955 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.919 ? metalc ? metalc26 H MG MG . B MG 952 1_555 J O HOH . B HOH 956 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1AJD _atom_sites.fract_transf_matrix[1][1] 0.005128 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005991 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013082 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 450 450 ZN ZN . D 2 ZN A 1 451 451 ZN ZN . E 3 MG A 1 452 452 MG MG . F 2 ZN B 1 950 950 ZN ZN . G 2 ZN B 1 951 951 ZN ZN . H 3 MG B 1 952 952 MG MG . I 4 HOH A 1 455 455 HOH HOH . I 4 HOH A 2 456 456 HOH HOH . J 4 HOH B 1 955 955 HOH HOH . J 4 HOH B 2 956 956 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x 52.72 _atom_site.Cartn_y 17.474 _atom_site.Cartn_z 33.461 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 7.02 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 950 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 232 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #