data_1AJV # _model_server_result.job_id bk28GAzKcSXBTANhlS0yoQ _model_server_result.datetime_utc '2024-11-21 17:07:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ajv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 1AJV # _exptl.entry_id 1AJV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 574.687 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,7-DIBENZYL-1,1-DIOXO-3,6-BIS-PHENOXYMETHYL-[1,2,7]THIADIAZEPANE-4,5-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1AJV _cell.length_a 58 _cell.length_b 85.8 _cell.length_c 46.5 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AJV _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C32 H34 N2 O6 S' _chem_comp.formula_weight 574.687 _chem_comp.id NMB _chem_comp.mon_nstd_flag . _chem_comp.name 2,7-DIBENZYL-1,1-DIOXO-3,6-BIS-PHENOXYMETHYL-[1,2,7]THIADIAZEPANE-4,5-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N01 S02 NMB sing 237 n n N01 C07 NMB sing 238 n n N01 C08 NMB sing 239 n n S02 N03 NMB sing 240 n n S02 O15 NMB doub 241 n n S02 O40 NMB doub 242 n n N03 C04 NMB sing 243 n n N03 C23 NMB sing 244 n n C04 C05 NMB sing 245 n n C04 C41 NMB sing 246 n n C04 H04 NMB sing 247 n n C05 C06 NMB sing 248 n n C05 O30 NMB sing 249 n n C05 H05 NMB sing 250 n n C06 C07 NMB sing 251 n n C06 O31 NMB sing 252 n n C06 H06 NMB sing 253 n n C07 C32 NMB sing 254 n n C07 H07 NMB sing 255 n n C08 C09 NMB sing 256 n n C08 H081 NMB sing 257 n n C08 H082 NMB sing 258 n n C09 C10 NMB doub 259 n y C09 C14 NMB sing 260 n y C10 C11 NMB sing 261 n y C10 H10 NMB sing 262 n n C11 C12 NMB doub 263 n y C11 H11 NMB sing 264 n n C12 C13 NMB sing 265 n y C12 H12 NMB sing 266 n n C13 C14 NMB doub 267 n y C13 H13 NMB sing 268 n n C14 H14 NMB sing 269 n n O16 C17 NMB sing 270 n n O16 C41 NMB sing 271 n n C17 C18 NMB doub 272 n y C17 C22 NMB sing 273 n y C18 C19 NMB sing 274 n y C18 H18 NMB sing 275 n n C19 C20 NMB doub 276 n y C19 H19 NMB sing 277 n n C20 C21 NMB sing 278 n y C20 H20 NMB sing 279 n n C21 C22 NMB doub 280 n y C21 H21 NMB sing 281 n n C22 H22 NMB sing 282 n n C23 C24 NMB sing 283 n n C23 H231 NMB sing 284 n n C23 H232 NMB sing 285 n n C24 C25 NMB doub 286 n y C24 C29 NMB sing 287 n y C25 C26 NMB sing 288 n y C25 H25 NMB sing 289 n n C26 C27 NMB doub 290 n y C26 H26 NMB sing 291 n n C27 C28 NMB sing 292 n y C27 H27 NMB sing 293 n n C28 C29 NMB doub 294 n y C28 H28 NMB sing 295 n n C29 H29 NMB sing 296 n n O30 HO3 NMB sing 297 n n O31 HO1 NMB sing 298 n n C32 O33 NMB sing 299 n n C32 H321 NMB sing 300 n n C32 H322 NMB sing 301 n n O33 C34 NMB sing 302 n n C34 C35 NMB doub 303 n y C34 C39 NMB sing 304 n y C35 C36 NMB sing 305 n y C35 H35 NMB sing 306 n n C36 C37 NMB doub 307 n y C36 H36 NMB sing 308 n n C37 C38 NMB sing 309 n y C37 H37 NMB sing 310 n n C38 C39 NMB doub 311 n y C38 H38 NMB sing 312 n n C39 H39 NMB sing 313 n n C41 H411 NMB sing 314 n n C41 H412 NMB sing 315 n n # _atom_sites.entry_id 1AJV _atom_sites.fract_transf_matrix[1][1] 0.017241 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011655 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021505 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NMB A 1 501 501 NMB NMB . D 3 HOH A 1 302 302 HOH HOH . D 3 HOH A 2 303 303 HOH HOH . D 3 HOH A 3 307 307 HOH HOH . D 3 HOH A 4 309 309 HOH HOH . D 3 HOH A 5 312 312 HOH HOH . D 3 HOH A 6 313 313 HOH HOH . D 3 HOH A 7 317 317 HOH HOH . D 3 HOH A 8 318 318 HOH HOH . D 3 HOH A 9 321 321 HOH HOH . D 3 HOH A 10 324 324 HOH HOH . D 3 HOH A 11 325 325 HOH HOH . D 3 HOH A 12 328 328 HOH HOH . D 3 HOH A 13 331 331 HOH HOH . D 3 HOH A 14 334 334 HOH HOH . D 3 HOH A 15 339 339 HOH HOH . D 3 HOH A 16 341 341 HOH HOH . D 3 HOH A 17 342 342 HOH HOH . D 3 HOH A 18 343 343 HOH HOH . D 3 HOH A 19 344 344 HOH HOH . D 3 HOH A 20 345 345 HOH HOH . D 3 HOH A 21 347 347 HOH HOH . D 3 HOH A 22 348 348 HOH HOH . D 3 HOH A 23 349 349 HOH HOH . D 3 HOH A 24 352 352 HOH HOH . D 3 HOH A 25 359 359 HOH HOH . D 3 HOH A 26 361 361 HOH HOH . D 3 HOH A 27 363 363 HOH HOH . E 3 HOH B 1 301 301 HOH HOH . E 3 HOH B 2 304 304 HOH HOH . E 3 HOH B 3 305 305 HOH HOH . E 3 HOH B 4 306 306 HOH HOH . E 3 HOH B 5 308 308 HOH HOH . E 3 HOH B 6 310 310 HOH HOH . E 3 HOH B 7 311 311 HOH HOH . E 3 HOH B 8 314 314 HOH HOH . E 3 HOH B 9 315 315 HOH HOH . E 3 HOH B 10 316 316 HOH HOH . E 3 HOH B 11 319 319 HOH HOH . E 3 HOH B 12 320 320 HOH HOH . E 3 HOH B 13 322 322 HOH HOH . E 3 HOH B 14 323 323 HOH HOH . E 3 HOH B 15 326 326 HOH HOH . E 3 HOH B 16 327 327 HOH HOH . E 3 HOH B 17 329 329 HOH HOH . E 3 HOH B 18 330 330 HOH HOH . E 3 HOH B 19 332 332 HOH HOH . E 3 HOH B 20 333 333 HOH HOH . E 3 HOH B 21 335 335 HOH HOH . E 3 HOH B 22 336 336 HOH HOH . E 3 HOH B 23 337 337 HOH HOH . E 3 HOH B 24 338 338 HOH HOH . E 3 HOH B 25 340 340 HOH HOH . E 3 HOH B 26 346 346 HOH HOH . E 3 HOH B 27 350 350 HOH HOH . E 3 HOH B 28 351 351 HOH HOH . E 3 HOH B 29 353 353 HOH HOH . E 3 HOH B 30 354 354 HOH HOH . E 3 HOH B 31 355 355 HOH HOH . E 3 HOH B 32 356 356 HOH HOH . E 3 HOH B 33 357 357 HOH HOH . E 3 HOH B 34 358 358 HOH HOH . E 3 HOH B 35 360 360 HOH HOH . E 3 HOH B 36 362 362 HOH HOH . E 3 HOH B 37 364 364 HOH HOH . E 3 HOH B 38 365 365 HOH HOH . E 3 HOH B 39 366 366 HOH HOH . E 3 HOH B 40 367 367 HOH HOH . E 3 HOH B 41 368 368 HOH HOH . E 3 HOH B 42 369 369 HOH HOH . E 3 HOH B 43 370 370 HOH HOH . E 3 HOH B 44 371 371 HOH HOH . E 3 HOH B 45 372 372 HOH HOH . E 3 HOH B 46 373 373 HOH HOH . E 3 HOH B 47 374 374 HOH HOH . E 3 HOH B 48 375 375 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N01 NMB . . . C 2 11.288 23.491 5.863 1 15.06 ? N01 NMB 501 A 1 HETATM 2 S S02 NMB . . . C 2 11.752 21.994 6.409 1 12.44 ? S02 NMB 501 A 1 HETATM 3 N N03 NMB . . . C 2 13.339 22.051 6.143 1 13.5 ? N03 NMB 501 A 1 HETATM 4 C C04 NMB . . . C 2 13.718 21.882 4.715 1 16.9 ? C04 NMB 501 A 1 HETATM 5 C C05 NMB . . . C 2 13.866 23.222 4.019 1 12.7 ? C05 NMB 501 A 1 HETATM 6 C C06 NMB . . . C 2 12.964 24.314 4.55 1 12.56 ? C06 NMB 501 A 1 HETATM 7 C C07 NMB . . . C 2 11.47 24.031 4.534 1 11.34 ? C07 NMB 501 A 1 HETATM 8 C C08 NMB . . . C 2 10.097 23.95 6.436 1 15.66 ? C08 NMB 501 A 1 HETATM 9 C C09 NMB . . . C 2 9.759 25.135 7.273 1 14.71 ? C09 NMB 501 A 1 HETATM 10 C C10 NMB . . . C 2 8.526 25.784 7.141 1 12.56 ? C10 NMB 501 A 1 HETATM 11 C C11 NMB . . . C 2 8.23 26.897 7.929 1 19.25 ? C11 NMB 501 A 1 HETATM 12 C C12 NMB . . . C 2 9.185 27.378 8.869 1 18.3 ? C12 NMB 501 A 1 HETATM 13 C C13 NMB . . . C 2 10.431 26.739 9.009 1 14.23 ? C13 NMB 501 A 1 HETATM 14 C C14 NMB . . . C 2 10.716 25.613 8.206 1 15.35 ? C14 NMB 501 A 1 HETATM 15 O O15 NMB . . . C 2 11.195 20.919 5.621 1 13.56 ? O15 NMB 501 A 1 HETATM 16 O O16 NMB . . . C 2 14.762 20.021 3.521 1 20.72 ? O16 NMB 501 A 1 HETATM 17 C C17 NMB . . . C 2 15.758 19.15 3.211 1 14.47 ? C17 NMB 501 A 1 HETATM 18 C C18 NMB . . . C 2 16.685 18.752 4.198 1 11.79 ? C18 NMB 501 A 1 HETATM 19 C C19 NMB . . . C 2 17.711 17.848 3.882 1 14.96 ? C19 NMB 501 A 1 HETATM 20 C C20 NMB . . . C 2 17.804 17.334 2.569 1 14.23 ? C20 NMB 501 A 1 HETATM 21 C C21 NMB . . . C 2 16.88 17.726 1.585 1 12.66 ? C21 NMB 501 A 1 HETATM 22 C C22 NMB . . . C 2 15.866 18.632 1.912 1 11.31 ? C22 NMB 501 A 1 HETATM 23 C C23 NMB . . . C 2 14.199 22.696 7.16 1 11.47 ? C23 NMB 501 A 1 HETATM 24 C C24 NMB . . . C 2 15.185 21.856 7.925 1 12.93 ? C24 NMB 501 A 1 HETATM 25 C C25 NMB . . . C 2 14.748 20.969 8.94 1 16.94 ? C25 NMB 501 A 1 HETATM 26 C C26 NMB . . . C 2 15.687 20.17 9.651 1 18.28 ? C26 NMB 501 A 1 HETATM 27 C C27 NMB . . . C 2 17.061 20.26 9.346 1 13.74 ? C27 NMB 501 A 1 HETATM 28 C C28 NMB . . . C 2 17.495 21.147 8.336 1 16.62 ? C28 NMB 501 A 1 HETATM 29 C C29 NMB . . . C 2 16.558 21.938 7.631 1 13.68 ? C29 NMB 501 A 1 HETATM 30 O O30 NMB . . . C 2 15.185 23.696 4.171 1 13.24 ? O30 NMB 501 A 1 HETATM 31 O O31 NMB . . . C 2 13.282 25.492 3.848 1 15.08 ? O31 NMB 501 A 1 HETATM 32 C C32 NMB . . . C 2 10.812 23.139 3.466 1 11.25 ? C32 NMB 501 A 1 HETATM 33 O O33 NMB . . . C 2 9.388 23.235 3.713 1 12.26 ? O33 NMB 501 A 1 HETATM 34 C C34 NMB . . . C 2 8.638 24.096 2.999 1 12.57 ? C34 NMB 501 A 1 HETATM 35 C C35 NMB . . . C 2 9.186 25.297 2.506 1 14 ? C35 NMB 501 A 1 HETATM 36 C C36 NMB . . . C 2 8.412 26.203 1.767 1 14.78 ? C36 NMB 501 A 1 HETATM 37 C C37 NMB . . . C 2 7.065 25.914 1.516 1 14.25 ? C37 NMB 501 A 1 HETATM 38 C C38 NMB . . . C 2 6.507 24.722 2.007 1 17.66 ? C38 NMB 501 A 1 HETATM 39 C C39 NMB . . . C 2 7.299 23.816 2.745 1 14.5 ? C39 NMB 501 A 1 HETATM 40 O O40 NMB . . . C 2 11.563 21.966 7.821 1 16.6 ? O40 NMB 501 A 1 HETATM 41 C C41 NMB . . . C 2 14.98 21.017 4.548 1 18.23 ? C41 NMB 501 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 41 #