data_1AKD # _model_server_result.job_id 49ZSSOvHufq7zYy8gRs-ig _model_server_result.datetime_utc '2024-11-23 06:53:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1akd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":515}' # _entry.id 1AKD # _exptl.entry_id 1AKD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 39.098 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'POTASSIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1AKD _cell.length_a 64.3 _cell.length_b 66.2 _cell.length_c 106.8 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AKD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLU 84 A GLU 84 1_555 B K K . A K 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? metalc ? metalc2 A O GLY 93 A GLY 93 1_555 B K K . A K 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.134 ? metalc ? metalc3 A O GLU 94 A GLU 94 1_555 B K K . A K 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.136 ? metalc ? metalc4 A O TYR 96 A TYR 96 1_555 B K K . A K 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc5 A SG CYS 357 A CYS 357 1_555 C FE HEM . A HEM 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? # _chem_comp.formula 'K 1' _chem_comp.formula_weight 39.098 _chem_comp.id K _chem_comp.mon_nstd_flag . _chem_comp.name 'POTASSIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1AKD _atom_sites.fract_transf_matrix[1][1] 0.015552 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015106 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009363 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K A 1 515 515 K K . C 3 HEM A 1 417 417 HEM HEM . D 4 CAM A 1 420 420 CAM CAM . E 5 HOH A 1 504 504 HOH HOH . E 5 HOH A 2 507 507 HOH HOH . E 5 HOH A 3 510 510 HOH HOH . E 5 HOH A 4 511 511 HOH HOH . E 5 HOH A 5 513 513 HOH HOH . E 5 HOH A 6 514 514 HOH HOH . E 5 HOH A 7 517 517 HOH HOH . E 5 HOH A 8 518 518 HOH HOH . E 5 HOH A 9 520 520 HOH HOH . E 5 HOH A 10 523 523 HOH HOH . E 5 HOH A 11 526 526 HOH HOH . E 5 HOH A 12 532 532 HOH HOH . E 5 HOH A 13 533 533 HOH HOH . E 5 HOH A 14 535 535 HOH HOH . E 5 HOH A 15 536 536 HOH HOH . E 5 HOH A 16 537 537 HOH HOH . E 5 HOH A 17 541 541 HOH HOH . E 5 HOH A 18 542 542 HOH HOH . E 5 HOH A 19 544 544 HOH HOH . E 5 HOH A 20 545 545 HOH HOH . E 5 HOH A 21 551 551 HOH HOH . E 5 HOH A 22 552 552 HOH HOH . E 5 HOH A 23 557 557 HOH HOH . E 5 HOH A 24 558 558 HOH HOH . E 5 HOH A 25 559 559 HOH HOH . E 5 HOH A 26 566 566 HOH HOH . E 5 HOH A 27 569 569 HOH HOH . E 5 HOH A 28 570 570 HOH HOH . E 5 HOH A 29 571 571 HOH HOH . E 5 HOH A 30 573 573 HOH HOH . E 5 HOH A 31 575 575 HOH HOH . E 5 HOH A 32 578 578 HOH HOH . E 5 HOH A 33 583 583 HOH HOH . E 5 HOH A 34 585 585 HOH HOH . E 5 HOH A 35 602 602 HOH HOH . E 5 HOH A 36 605 605 HOH HOH . E 5 HOH A 37 607 607 HOH HOH . E 5 HOH A 38 616 616 HOH HOH . E 5 HOH A 39 619 619 HOH HOH . E 5 HOH A 40 620 620 HOH HOH . E 5 HOH A 41 622 622 HOH HOH . E 5 HOH A 42 632 632 HOH HOH . E 5 HOH A 43 633 633 HOH HOH . E 5 HOH A 44 643 643 HOH HOH . E 5 HOH A 45 644 644 HOH HOH . E 5 HOH A 46 646 646 HOH HOH . E 5 HOH A 47 649 649 HOH HOH . E 5 HOH A 48 651 651 HOH HOH . E 5 HOH A 49 655 655 HOH HOH . E 5 HOH A 50 659 659 HOH HOH . E 5 HOH A 51 660 660 HOH HOH . E 5 HOH A 52 663 663 HOH HOH . E 5 HOH A 53 668 668 HOH HOH . E 5 HOH A 54 669 669 HOH HOH . E 5 HOH A 55 671 671 HOH HOH . E 5 HOH A 56 672 672 HOH HOH . E 5 HOH A 57 677 677 HOH HOH . E 5 HOH A 58 679 679 HOH HOH . E 5 HOH A 59 680 680 HOH HOH . E 5 HOH A 60 681 681 HOH HOH . E 5 HOH A 61 682 682 HOH HOH . E 5 HOH A 62 683 683 HOH HOH . E 5 HOH A 63 686 686 HOH HOH . E 5 HOH A 64 687 687 HOH HOH . E 5 HOH A 65 692 692 HOH HOH . E 5 HOH A 66 696 696 HOH HOH . E 5 HOH A 67 698 698 HOH HOH . E 5 HOH A 68 702 702 HOH HOH . E 5 HOH A 69 718 718 HOH HOH . E 5 HOH A 70 719 719 HOH HOH . E 5 HOH A 71 721 721 HOH HOH . E 5 HOH A 72 728 728 HOH HOH . E 5 HOH A 73 733 733 HOH HOH . E 5 HOH A 74 741 741 HOH HOH . E 5 HOH A 75 1523 1523 HOH HOH . E 5 HOH A 76 1535 1535 HOH HOH . E 5 HOH A 77 1553 1553 HOH HOH . E 5 HOH A 78 1556 1556 HOH HOH . E 5 HOH A 79 1597 1597 HOH HOH . E 5 HOH A 80 1615 1615 HOH HOH . E 5 HOH A 81 1627 1627 HOH HOH . E 5 HOH A 82 1691 1691 HOH HOH . E 5 HOH A 83 1696 1696 HOH HOH . E 5 HOH A 84 1735 1735 HOH HOH . E 5 HOH A 85 1746 1746 HOH HOH . E 5 HOH A 86 1753 1753 HOH HOH . E 5 HOH A 87 1757 1757 HOH HOH . E 5 HOH A 88 1763 1763 HOH HOH . E 5 HOH A 89 1767 1767 HOH HOH . E 5 HOH A 90 1768 1768 HOH HOH . E 5 HOH A 91 1769 1769 HOH HOH . E 5 HOH A 92 1777 1777 HOH HOH . E 5 HOH A 93 1778 1778 HOH HOH . E 5 HOH A 94 1789 1789 HOH HOH . E 5 HOH A 95 1790 1790 HOH HOH . E 5 HOH A 96 1800 1800 HOH HOH . E 5 HOH A 97 1803 1803 HOH HOH . E 5 HOH A 98 1822 1822 HOH HOH . E 5 HOH A 99 1824 1824 HOH HOH . E 5 HOH A 100 1825 1825 HOH HOH . E 5 HOH A 101 1828 1828 HOH HOH . E 5 HOH A 102 1829 1829 HOH HOH . E 5 HOH A 103 1833 1833 HOH HOH . E 5 HOH A 104 1834 1834 HOH HOH . E 5 HOH A 105 2000 2000 HOH HOH . E 5 HOH A 106 2007 2007 HOH HOH . E 5 HOH A 107 2008 2008 HOH HOH . E 5 HOH A 108 2014 2014 HOH HOH . E 5 HOH A 109 2017 2017 HOH HOH . E 5 HOH A 110 2042 2042 HOH HOH . E 5 HOH A 111 2055 2055 HOH HOH . E 5 HOH A 112 4000 4000 HOH HOH . E 5 HOH A 113 4003 4003 HOH HOH . E 5 HOH A 114 5000 5000 HOH HOH . E 5 HOH A 115 5001 5001 HOH HOH . E 5 HOH A 116 5002 5002 HOH HOH . E 5 HOH A 117 6000 6000 HOH HOH . E 5 HOH A 118 6022 6022 HOH HOH . E 5 HOH A 119 6023 6023 HOH HOH . E 5 HOH A 120 6029 6029 HOH HOH . E 5 HOH A 121 6030 6030 HOH HOH . E 5 HOH A 122 6054 6054 HOH HOH . E 5 HOH A 123 6055 6055 HOH HOH . E 5 HOH A 124 6058 6058 HOH HOH . E 5 HOH A 125 6063 6063 HOH HOH . E 5 HOH A 126 6070 6070 HOH HOH . E 5 HOH A 127 6087 6087 HOH HOH . E 5 HOH A 128 6110 6110 HOH HOH . E 5 HOH A 129 6120 6120 HOH HOH . E 5 HOH A 130 6165 6165 HOH HOH . E 5 HOH A 131 6179 6179 HOH HOH . E 5 HOH A 132 6202 6202 HOH HOH . E 5 HOH A 133 6207 6207 HOH HOH . E 5 HOH A 134 6301 6301 HOH HOH . E 5 HOH A 135 6302 6302 HOH HOH . E 5 HOH A 136 6303 6303 HOH HOH . E 5 HOH A 137 6304 6304 HOH HOH . E 5 HOH A 138 6305 6305 HOH HOH . E 5 HOH A 139 6306 6306 HOH HOH . E 5 HOH A 140 6308 6308 HOH HOH . E 5 HOH A 141 6320 6320 HOH HOH . E 5 HOH A 142 6321 6321 HOH HOH . E 5 HOH A 143 7005 7005 HOH HOH . E 5 HOH A 144 7007 7007 HOH HOH . E 5 HOH A 145 7008 7008 HOH HOH . E 5 HOH A 146 7010 7010 HOH HOH . E 5 HOH A 147 7011 7011 HOH HOH . E 5 HOH A 148 7012 7012 HOH HOH . E 5 HOH A 149 7013 7013 HOH HOH . E 5 HOH A 150 7014 7014 HOH HOH . E 5 HOH A 151 7015 7015 HOH HOH . E 5 HOH A 152 7016 7016 HOH HOH . E 5 HOH A 153 7017 7017 HOH HOH . E 5 HOH A 154 7019 7019 HOH HOH . E 5 HOH A 155 7020 7020 HOH HOH . E 5 HOH A 156 7021 7021 HOH HOH . E 5 HOH A 157 7022 7022 HOH HOH . E 5 HOH A 158 7023 7023 HOH HOH . E 5 HOH A 159 7024 7024 HOH HOH . E 5 HOH A 160 7025 7025 HOH HOH . E 5 HOH A 161 7026 7026 HOH HOH . E 5 HOH A 162 7027 7027 HOH HOH . E 5 HOH A 163 7028 7028 HOH HOH . E 5 HOH A 164 7029 7029 HOH HOH . E 5 HOH A 165 7031 7031 HOH HOH . E 5 HOH A 166 7032 7032 HOH HOH . E 5 HOH A 167 7033 7033 HOH HOH . E 5 HOH A 168 7034 7034 HOH HOH . E 5 HOH A 169 7035 7035 HOH HOH . E 5 HOH A 170 7037 7037 HOH HOH . E 5 HOH A 171 7038 7038 HOH HOH . E 5 HOH A 172 7039 7039 HOH HOH . E 5 HOH A 173 7040 7040 HOH HOH . E 5 HOH A 174 7041 7041 HOH HOH . E 5 HOH A 175 7042 7042 HOH HOH . E 5 HOH A 176 7043 7043 HOH HOH . E 5 HOH A 177 7044 7044 HOH HOH . E 5 HOH A 178 7045 7045 HOH HOH . E 5 HOH A 179 7046 7046 HOH HOH . E 5 HOH A 180 7047 7047 HOH HOH . E 5 HOH A 181 7051 7051 HOH HOH . E 5 HOH A 182 7052 7052 HOH HOH . E 5 HOH A 183 7053 7053 HOH HOH . E 5 HOH A 184 7054 7054 HOH HOH . E 5 HOH A 185 7055 7055 HOH HOH . E 5 HOH A 186 7056 7056 HOH HOH . E 5 HOH A 187 7057 7057 HOH HOH . E 5 HOH A 188 7058 7058 HOH HOH . E 5 HOH A 189 7059 7059 HOH HOH . E 5 HOH A 190 7060 7060 HOH HOH . E 5 HOH A 191 7061 7061 HOH HOH . E 5 HOH A 192 7062 7062 HOH HOH . E 5 HOH A 193 7064 7064 HOH HOH . E 5 HOH A 194 7065 7065 HOH HOH . E 5 HOH A 195 7066 7066 HOH HOH . E 5 HOH A 196 7067 7067 HOH HOH . E 5 HOH A 197 7068 7068 HOH HOH . E 5 HOH A 198 7072 7072 HOH HOH . E 5 HOH A 199 7075 7075 HOH HOH . E 5 HOH A 200 7076 7076 HOH HOH . E 5 HOH A 201 7081 7081 HOH HOH . E 5 HOH A 202 7084 7084 HOH HOH . E 5 HOH A 203 8000 8000 HOH HOH . E 5 HOH A 204 8001 8001 HOH HOH . E 5 HOH A 205 8002 8002 HOH HOH . E 5 HOH A 206 8004 8004 HOH HOH . E 5 HOH A 207 8005 8005 HOH HOH . E 5 HOH A 208 8009 8009 HOH HOH . E 5 HOH A 209 8011 8011 HOH HOH . E 5 HOH A 210 8013 8013 HOH HOH . E 5 HOH A 211 8016 8016 HOH HOH . E 5 HOH A 212 8017 8017 HOH HOH . E 5 HOH A 213 9000 9000 HOH HOH . E 5 HOH A 214 9002 9002 HOH HOH . E 5 HOH A 215 9003 9003 HOH HOH . E 5 HOH A 216 9006 9006 HOH HOH . E 5 HOH A 217 9009 9009 HOH HOH . E 5 HOH A 218 9010 9010 HOH HOH . E 5 HOH A 219 9011 9011 HOH HOH . E 5 HOH A 220 9013 9013 HOH HOH . E 5 HOH A 221 9014 9014 HOH HOH . E 5 HOH A 222 9015 9015 HOH HOH . E 5 HOH A 223 9016 9016 HOH HOH . E 5 HOH A 224 9017 9017 HOH HOH . E 5 HOH A 225 9019 9019 HOH HOH . E 5 HOH A 226 9020 9020 HOH HOH . E 5 HOH A 227 9022 9022 HOH HOH . E 5 HOH A 228 9025 9025 HOH HOH . E 5 HOH A 229 9026 9026 HOH HOH . E 5 HOH A 230 9028 9028 HOH HOH . E 5 HOH A 231 9029 9029 HOH HOH . E 5 HOH A 232 9030 9030 HOH HOH . E 5 HOH A 233 9034 9034 HOH HOH . E 5 HOH A 234 9035 9035 HOH HOH . E 5 HOH A 235 9036 9036 HOH HOH . E 5 HOH A 236 9037 9037 HOH HOH . E 5 HOH A 237 9038 9038 HOH HOH . E 5 HOH A 238 9039 9039 HOH HOH . E 5 HOH A 239 9042 9042 HOH HOH . E 5 HOH A 240 9043 9043 HOH HOH . E 5 HOH A 241 9045 9045 HOH HOH . E 5 HOH A 242 9048 9048 HOH HOH . E 5 HOH A 243 9057 9057 HOH HOH . E 5 HOH A 244 9058 9058 HOH HOH . E 5 HOH A 245 9059 9059 HOH HOH . E 5 HOH A 246 9061 9061 HOH HOH . E 5 HOH A 247 9064 9064 HOH HOH . E 5 HOH A 248 9065 9065 HOH HOH . E 5 HOH A 249 9066 9066 HOH HOH . E 5 HOH A 250 9067 9067 HOH HOH . E 5 HOH A 251 9068 9068 HOH HOH . E 5 HOH A 252 9069 9069 HOH HOH . E 5 HOH A 253 9071 9071 HOH HOH . E 5 HOH A 254 9072 9072 HOH HOH . E 5 HOH A 255 9077 9077 HOH HOH . E 5 HOH A 256 9078 9078 HOH HOH . E 5 HOH A 257 9081 9081 HOH HOH . E 5 HOH A 258 9082 9082 HOH HOH . E 5 HOH A 259 9083 9083 HOH HOH . E 5 HOH A 260 9084 9084 HOH HOH . E 5 HOH A 261 9085 9085 HOH HOH . E 5 HOH A 262 9086 9086 HOH HOH . E 5 HOH A 263 9087 9087 HOH HOH . E 5 HOH A 264 9089 9089 HOH HOH . E 5 HOH A 265 9091 9091 HOH HOH . E 5 HOH A 266 9093 9093 HOH HOH . E 5 HOH A 267 9094 9094 HOH HOH . E 5 HOH A 268 9096 9096 HOH HOH . E 5 HOH A 269 9097 9097 HOH HOH . E 5 HOH A 270 9098 9098 HOH HOH . E 5 HOH A 271 9099 9099 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol K _atom_site.label_atom_id K _atom_site.label_comp_id K _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 20.379 _atom_site.Cartn_y 29.439 _atom_site.Cartn_z -4.412 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 23.28 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id K _atom_site.auth_comp_id K _atom_site.auth_seq_id 515 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 1 #