data_1AKR # _model_server_result.job_id FeF_Lktyibs1Bup0RmMfMA _model_server_result.datetime_utc '2024-12-25 02:30:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1akr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":149}' # _entry.id 1AKR # _exptl.entry_id 1AKR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1AKR _cell.length_a 56.493 _cell.length_b 87.99 _cell.length_c 35.084 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AKR _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 1AKR _atom_sites.fract_transf_matrix[1][1] 0.017701 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011365 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.028503 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 149 149 FMN FMN . C 3 HOH A 1 150 1 HOH HOH . C 3 HOH A 2 151 2 HOH HOH . C 3 HOH A 3 152 3 HOH HOH . C 3 HOH A 4 153 4 HOH HOH . C 3 HOH A 5 154 5 HOH HOH . C 3 HOH A 6 155 6 HOH HOH . C 3 HOH A 7 156 7 HOH HOH . C 3 HOH A 8 157 8 HOH HOH . C 3 HOH A 9 158 9 HOH HOH . C 3 HOH A 10 159 10 HOH HOH . C 3 HOH A 11 160 11 HOH HOH . C 3 HOH A 12 161 12 HOH HOH . C 3 HOH A 13 162 13 HOH HOH . C 3 HOH A 14 163 14 HOH HOH . C 3 HOH A 15 164 15 HOH HOH . C 3 HOH A 16 165 16 HOH HOH . C 3 HOH A 17 166 17 HOH HOH . C 3 HOH A 18 167 18 HOH HOH . C 3 HOH A 19 168 19 HOH HOH . C 3 HOH A 20 169 20 HOH HOH . C 3 HOH A 21 170 21 HOH HOH . C 3 HOH A 22 171 22 HOH HOH . C 3 HOH A 23 172 23 HOH HOH . C 3 HOH A 24 173 24 HOH HOH . C 3 HOH A 25 174 25 HOH HOH . C 3 HOH A 26 175 26 HOH HOH . C 3 HOH A 27 176 27 HOH HOH . C 3 HOH A 28 177 28 HOH HOH . C 3 HOH A 29 178 29 HOH HOH . C 3 HOH A 30 179 30 HOH HOH . C 3 HOH A 31 180 31 HOH HOH . C 3 HOH A 32 181 32 HOH HOH . C 3 HOH A 33 182 33 HOH HOH . C 3 HOH A 34 183 34 HOH HOH . C 3 HOH A 35 184 35 HOH HOH . C 3 HOH A 36 185 36 HOH HOH . C 3 HOH A 37 186 37 HOH HOH . C 3 HOH A 38 187 38 HOH HOH . C 3 HOH A 39 188 39 HOH HOH . C 3 HOH A 40 189 40 HOH HOH . C 3 HOH A 41 190 41 HOH HOH . C 3 HOH A 42 191 42 HOH HOH . C 3 HOH A 43 192 43 HOH HOH . C 3 HOH A 44 193 44 HOH HOH . C 3 HOH A 45 194 45 HOH HOH . C 3 HOH A 46 195 46 HOH HOH . C 3 HOH A 47 196 47 HOH HOH . C 3 HOH A 48 197 48 HOH HOH . C 3 HOH A 49 198 49 HOH HOH . C 3 HOH A 50 199 50 HOH HOH . C 3 HOH A 51 200 51 HOH HOH . C 3 HOH A 52 201 52 HOH HOH . C 3 HOH A 53 202 53 HOH HOH . C 3 HOH A 54 203 54 HOH HOH . C 3 HOH A 55 204 55 HOH HOH . C 3 HOH A 56 205 56 HOH HOH . C 3 HOH A 57 206 57 HOH HOH . C 3 HOH A 58 207 58 HOH HOH . C 3 HOH A 59 208 59 HOH HOH . C 3 HOH A 60 209 60 HOH HOH . C 3 HOH A 61 210 61 HOH HOH . C 3 HOH A 62 211 62 HOH HOH . C 3 HOH A 63 212 63 HOH HOH . C 3 HOH A 64 213 64 HOH HOH . C 3 HOH A 65 214 65 HOH HOH . C 3 HOH A 66 215 66 HOH HOH . C 3 HOH A 67 216 67 HOH HOH . C 3 HOH A 68 217 68 HOH HOH . C 3 HOH A 69 218 69 HOH HOH . C 3 HOH A 70 219 70 HOH HOH . C 3 HOH A 71 220 71 HOH HOH . C 3 HOH A 72 221 72 HOH HOH . C 3 HOH A 73 222 73 HOH HOH . C 3 HOH A 74 223 74 HOH HOH . C 3 HOH A 75 224 75 HOH HOH . C 3 HOH A 76 225 76 HOH HOH . C 3 HOH A 77 226 77 HOH HOH . C 3 HOH A 78 227 78 HOH HOH . C 3 HOH A 79 228 79 HOH HOH . C 3 HOH A 80 229 80 HOH HOH . C 3 HOH A 81 230 81 HOH HOH . C 3 HOH A 82 231 82 HOH HOH . C 3 HOH A 83 232 83 HOH HOH . C 3 HOH A 84 233 84 HOH HOH . C 3 HOH A 85 234 85 HOH HOH . C 3 HOH A 86 235 86 HOH HOH . C 3 HOH A 87 236 87 HOH HOH . C 3 HOH A 88 237 88 HOH HOH . C 3 HOH A 89 238 89 HOH HOH . C 3 HOH A 90 239 90 HOH HOH . C 3 HOH A 91 240 91 HOH HOH . C 3 HOH A 92 241 92 HOH HOH . C 3 HOH A 93 242 93 HOH HOH . C 3 HOH A 94 243 94 HOH HOH . C 3 HOH A 95 244 95 HOH HOH . C 3 HOH A 96 245 96 HOH HOH . C 3 HOH A 97 246 97 HOH HOH . C 3 HOH A 98 247 98 HOH HOH . C 3 HOH A 99 248 99 HOH HOH . C 3 HOH A 100 249 100 HOH HOH . C 3 HOH A 101 250 101 HOH HOH . C 3 HOH A 102 251 102 HOH HOH . C 3 HOH A 103 252 103 HOH HOH . C 3 HOH A 104 253 104 HOH HOH . C 3 HOH A 105 254 105 HOH HOH . C 3 HOH A 106 255 106 HOH HOH . C 3 HOH A 107 256 107 HOH HOH . C 3 HOH A 108 257 108 HOH HOH . C 3 HOH A 109 258 109 HOH HOH . C 3 HOH A 110 259 110 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 -4.167 36.033 18.095 1 12.83 ? N1 FMN 149 A 1 HETATM 2 C C2 FMN . . . B 2 -3.206 36.736 18.794 1 13.8 ? C2 FMN 149 A 1 HETATM 3 O O2 FMN . . . B 2 -2.336 37.545 18.148 1 16.78 ? O2 FMN 149 A 1 HETATM 4 N N3 FMN . . . B 2 -3.145 36.664 20.18 1 15.38 ? N3 FMN 149 A 1 HETATM 5 C C4 FMN . . . B 2 -4.019 35.869 20.907 1 16.99 ? C4 FMN 149 A 1 HETATM 6 O O4 FMN . . . B 2 -3.896 35.801 22.274 1 21.28 ? O4 FMN 149 A 1 HETATM 7 C C4A FMN . . . B 2 -5.006 35.132 20.186 1 15.86 ? C4A FMN 149 A 1 HETATM 8 N N5 FMN . . . B 2 -5.869 34.325 20.895 1 15.72 ? N5 FMN 149 A 1 HETATM 9 C C5A FMN . . . B 2 -6.899 33.712 20.171 1 16.4 ? C5A FMN 149 A 1 HETATM 10 C C6 FMN . . . B 2 -7.864 33.002 20.935 1 18.88 ? C6 FMN 149 A 1 HETATM 11 C C7 FMN . . . B 2 -8.895 32.413 20.19 1 22.95 ? C7 FMN 149 A 1 HETATM 12 C C7M FMN . . . B 2 -9.905 31.688 20.909 1 24.93 ? C7M FMN 149 A 1 HETATM 13 C C8 FMN . . . B 2 -8.974 32.517 18.792 1 20.76 ? C8 FMN 149 A 1 HETATM 14 C C8M FMN . . . B 2 -10.043 31.907 18.056 1 20.19 ? C8M FMN 149 A 1 HETATM 15 C C9 FMN . . . B 2 -7.998 33.222 18.057 1 17.58 ? C9 FMN 149 A 1 HETATM 16 C C9A FMN . . . B 2 -6.931 33.818 18.771 1 15.91 ? C9A FMN 149 A 1 HETATM 17 N N10 FMN . . . B 2 -5.983 34.522 18.032 1 15.34 ? N10 FMN 149 A 1 HETATM 18 C C10 FMN . . . B 2 -5.05 35.228 18.776 1 12.74 ? C10 FMN 149 A 1 HETATM 19 C C1' FMN . . . B 2 -5.943 34.677 16.635 1 15.6 ? C1' FMN 149 A 1 HETATM 20 C C2' FMN . . . B 2 -5.275 33.412 16.056 1 14.41 ? C2' FMN 149 A 1 HETATM 21 O O2' FMN . . . B 2 -3.887 33.332 16.427 1 15.31 ? O2' FMN 149 A 1 HETATM 22 C C3' FMN . . . B 2 -5.364 33.539 14.51 1 16.79 ? C3' FMN 149 A 1 HETATM 23 O O3' FMN . . . B 2 -6.717 33.21 14.217 1 18 ? O3' FMN 149 A 1 HETATM 24 C C4' FMN . . . B 2 -4.401 32.771 13.702 1 15.84 ? C4' FMN 149 A 1 HETATM 25 O O4' FMN . . . B 2 -4.536 33.109 12.293 1 15 ? O4' FMN 149 A 1 HETATM 26 C C5' FMN . . . B 2 -4.451 31.346 13.858 1 15.01 ? C5' FMN 149 A 1 HETATM 27 O O5' FMN . . . B 2 -3.353 30.8 13.127 1 13.5 ? O5' FMN 149 A 1 HETATM 28 P P FMN . . . B 2 -3.283 29.187 12.753 1 13.28 ? P FMN 149 A 1 HETATM 29 O O1P FMN . . . B 2 -3.395 28.319 14.142 1 14.37 ? O1P FMN 149 A 1 HETATM 30 O O2P FMN . . . B 2 -1.839 28.924 11.98 1 13.17 ? O2P FMN 149 A 1 HETATM 31 O O3P FMN . . . B 2 -4.464 28.811 11.656 1 14.44 ? O3P FMN 149 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #