data_1AKV # _model_server_result.job_id vY3nw084TjLaKlx76O3Giw _model_server_result.datetime_utc '2024-12-25 16:16:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1akv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":152}' # _entry.id 1AKV # _exptl.entry_id 1AKV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1AKV _cell.length_a 52.61 _cell.length_b 52.61 _cell.length_c 138.34 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AKV _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 1AKV _atom_sites.fract_transf_matrix[1][1] 0.019008 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019008 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007229 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1 1 SO4 SO4 . C 2 SO4 A 1 149 2 SO4 SO4 . D 2 SO4 A 1 150 3 SO4 SO4 . E 2 SO4 A 1 151 4 SO4 SO4 . F 3 FMN A 1 152 149 FMN FMN . G 4 HOH A 1 153 1 HOH HOH . G 4 HOH A 2 154 2 HOH HOH . G 4 HOH A 3 155 3 HOH HOH . G 4 HOH A 4 156 4 HOH HOH . G 4 HOH A 5 157 5 HOH HOH . G 4 HOH A 6 158 6 HOH HOH . G 4 HOH A 7 159 7 HOH HOH . G 4 HOH A 8 160 8 HOH HOH . G 4 HOH A 9 161 9 HOH HOH . G 4 HOH A 10 162 10 HOH HOH . G 4 HOH A 11 163 11 HOH HOH . G 4 HOH A 12 164 12 HOH HOH . G 4 HOH A 13 165 13 HOH HOH . G 4 HOH A 14 166 14 HOH HOH . G 4 HOH A 15 167 15 HOH HOH . G 4 HOH A 16 168 16 HOH HOH . G 4 HOH A 17 169 17 HOH HOH . G 4 HOH A 18 170 18 HOH HOH . G 4 HOH A 19 171 19 HOH HOH . G 4 HOH A 20 172 20 HOH HOH . G 4 HOH A 21 173 21 HOH HOH . G 4 HOH A 22 174 22 HOH HOH . G 4 HOH A 23 175 23 HOH HOH . G 4 HOH A 24 176 24 HOH HOH . G 4 HOH A 25 177 25 HOH HOH . G 4 HOH A 26 178 26 HOH HOH . G 4 HOH A 27 179 27 HOH HOH . G 4 HOH A 28 180 28 HOH HOH . G 4 HOH A 29 181 29 HOH HOH . G 4 HOH A 30 182 30 HOH HOH . G 4 HOH A 31 183 31 HOH HOH . G 4 HOH A 32 184 32 HOH HOH . G 4 HOH A 33 185 33 HOH HOH . G 4 HOH A 34 186 34 HOH HOH . G 4 HOH A 35 187 35 HOH HOH . G 4 HOH A 36 188 36 HOH HOH . G 4 HOH A 37 189 37 HOH HOH . G 4 HOH A 38 190 38 HOH HOH . G 4 HOH A 39 191 39 HOH HOH . G 4 HOH A 40 192 40 HOH HOH . G 4 HOH A 41 193 41 HOH HOH . G 4 HOH A 42 194 42 HOH HOH . G 4 HOH A 43 195 43 HOH HOH . G 4 HOH A 44 196 44 HOH HOH . G 4 HOH A 45 197 45 HOH HOH . G 4 HOH A 46 198 46 HOH HOH . G 4 HOH A 47 199 47 HOH HOH . G 4 HOH A 48 200 48 HOH HOH . G 4 HOH A 49 201 49 HOH HOH . G 4 HOH A 50 202 50 HOH HOH . G 4 HOH A 51 203 51 HOH HOH . G 4 HOH A 52 204 52 HOH HOH . G 4 HOH A 53 205 53 HOH HOH . G 4 HOH A 54 206 54 HOH HOH . G 4 HOH A 55 207 55 HOH HOH . G 4 HOH A 56 208 56 HOH HOH . G 4 HOH A 57 209 57 HOH HOH . G 4 HOH A 58 210 58 HOH HOH . G 4 HOH A 59 211 59 HOH HOH . G 4 HOH A 60 212 60 HOH HOH . G 4 HOH A 61 213 61 HOH HOH . G 4 HOH A 62 214 62 HOH HOH . G 4 HOH A 63 215 63 HOH HOH . G 4 HOH A 64 216 64 HOH HOH . G 4 HOH A 65 217 65 HOH HOH . G 4 HOH A 66 218 66 HOH HOH . G 4 HOH A 67 219 67 HOH HOH . G 4 HOH A 68 220 68 HOH HOH . G 4 HOH A 69 221 69 HOH HOH . G 4 HOH A 70 222 70 HOH HOH . G 4 HOH A 71 223 71 HOH HOH . G 4 HOH A 72 224 72 HOH HOH . G 4 HOH A 73 225 73 HOH HOH . G 4 HOH A 74 226 74 HOH HOH . G 4 HOH A 75 227 75 HOH HOH . G 4 HOH A 76 228 76 HOH HOH . G 4 HOH A 77 229 77 HOH HOH . G 4 HOH A 78 230 78 HOH HOH . G 4 HOH A 79 231 79 HOH HOH . G 4 HOH A 80 232 80 HOH HOH . G 4 HOH A 81 233 81 HOH HOH . G 4 HOH A 82 234 82 HOH HOH . G 4 HOH A 83 235 83 HOH HOH . G 4 HOH A 84 236 84 HOH HOH . G 4 HOH A 85 237 85 HOH HOH . G 4 HOH A 86 238 86 HOH HOH . G 4 HOH A 87 239 87 HOH HOH . G 4 HOH A 88 240 88 HOH HOH . G 4 HOH A 89 241 89 HOH HOH . G 4 HOH A 90 242 90 HOH HOH . G 4 HOH A 91 243 91 HOH HOH . G 4 HOH A 92 244 92 HOH HOH . G 4 HOH A 93 245 93 HOH HOH . G 4 HOH A 94 246 94 HOH HOH . G 4 HOH A 95 247 95 HOH HOH . G 4 HOH A 96 248 96 HOH HOH . G 4 HOH A 97 249 97 HOH HOH . G 4 HOH A 98 250 98 HOH HOH . G 4 HOH A 99 251 99 HOH HOH . G 4 HOH A 100 252 100 HOH HOH . G 4 HOH A 101 253 101 HOH HOH . G 4 HOH A 102 254 102 HOH HOH . G 4 HOH A 103 255 103 HOH HOH . G 4 HOH A 104 256 104 HOH HOH . G 4 HOH A 105 257 105 HOH HOH . G 4 HOH A 106 258 106 HOH HOH . G 4 HOH A 107 259 107 HOH HOH . G 4 HOH A 108 260 108 HOH HOH . G 4 HOH A 109 261 109 HOH HOH . G 4 HOH A 110 262 110 HOH HOH . G 4 HOH A 111 263 111 HOH HOH . G 4 HOH A 112 264 112 HOH HOH . G 4 HOH A 113 265 113 HOH HOH . G 4 HOH A 114 266 114 HOH HOH . G 4 HOH A 115 267 115 HOH HOH . G 4 HOH A 116 268 116 HOH HOH . G 4 HOH A 117 269 117 HOH HOH . G 4 HOH A 118 270 124 HOH HOH . G 4 HOH A 119 271 125 HOH HOH . G 4 HOH A 120 272 127 HOH HOH . G 4 HOH A 121 273 128 HOH HOH . G 4 HOH A 122 274 129 HOH HOH . G 4 HOH A 123 275 132 HOH HOH . G 4 HOH A 124 276 133 HOH HOH . G 4 HOH A 125 277 137 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . F 3 51.795 11.987 21.491 1 10.21 ? N1 FMN 152 A 1 HETATM 2 C C2 FMN . . . F 3 50.723 11.232 21.04 1 5.15 ? C2 FMN 152 A 1 HETATM 3 O O2 FMN . . . F 3 50.911 10.617 19.85 1 15.2 ? O2 FMN 152 A 1 HETATM 4 N N3 FMN . . . F 3 49.546 11.076 21.729 1 10.89 ? N3 FMN 152 A 1 HETATM 5 C C4 FMN . . . F 3 49.39 11.693 22.969 1 8.86 ? C4 FMN 152 A 1 HETATM 6 O O4 FMN . . . F 3 48.242 11.58 23.707 1 13.93 ? O4 FMN 152 A 1 HETATM 7 C C4A FMN . . . F 3 50.446 12.491 23.467 1 11.49 ? C4A FMN 152 A 1 HETATM 8 N N5 FMN . . . F 3 50.294 13.116 24.695 1 10.27 ? N5 FMN 152 A 1 HETATM 9 C C5A FMN . . . F 3 51.406 13.727 25.276 1 7.85 ? C5A FMN 152 A 1 HETATM 10 C C6 FMN . . . F 3 51.31 14.205 26.608 1 13.25 ? C6 FMN 152 A 1 HETATM 11 C C7 FMN . . . F 3 52.469 14.763 27.179 1 17.54 ? C7 FMN 152 A 1 HETATM 12 C C7M FMN . . . F 3 52.436 15.221 28.559 1 17.7 ? C7M FMN 152 A 1 HETATM 13 C C8 FMN . . . F 3 53.647 14.877 26.43 1 14.42 ? C8 FMN 152 A 1 HETATM 14 C C8M FMN . . . F 3 54.866 15.409 26.948 1 9.61 ? C8M FMN 152 A 1 HETATM 15 C C9 FMN . . . F 3 53.713 14.419 25.085 1 12.31 ? C9 FMN 152 A 1 HETATM 16 C C9A FMN . . . F 3 52.578 13.814 24.508 1 10.6 ? C9A FMN 152 A 1 HETATM 17 N N10 FMN . . . F 3 52.673 13.394 23.165 1 14.21 ? N10 FMN 152 A 1 HETATM 18 C C10 FMN . . . F 3 51.602 12.66 22.681 1 11.58 ? C10 FMN 152 A 1 HETATM 19 C C1' FMN . . . F 3 53.82 13.45 22.362 1 12.5 ? C1' FMN 152 A 1 HETATM 20 C C2' FMN . . . F 3 53.959 14.818 21.696 1 4.22 ? C2' FMN 152 A 1 HETATM 21 O O2' FMN . . . F 3 52.834 15.002 20.802 1 11.74 ? O2' FMN 152 A 1 HETATM 22 C C3' FMN . . . F 3 55.312 14.818 20.948 1 10.81 ? C3' FMN 152 A 1 HETATM 23 O O3' FMN . . . F 3 56.389 15.032 21.894 1 12.86 ? O3' FMN 152 A 1 HETATM 24 C C4' FMN . . . F 3 55.419 15.799 19.823 1 7.88 ? C4' FMN 152 A 1 HETATM 25 O O4' FMN . . . F 3 56.694 15.573 19.12 1 9.93 ? O4' FMN 152 A 1 HETATM 26 C C5' FMN . . . F 3 55.411 17.185 20.19 1 10.12 ? C5' FMN 152 A 1 HETATM 27 O O5' FMN . . . F 3 55.198 17.94 18.978 1 8.45 ? O5' FMN 152 A 1 HETATM 28 P P FMN . . . F 3 55.258 19.578 18.989 1 6.03 ? P FMN 152 A 1 HETATM 29 O O1P FMN . . . F 3 54.128 20.343 19.954 1 11.39 ? O1P FMN 152 A 1 HETATM 30 O O2P FMN . . . F 3 54.96 20.118 17.395 1 10.51 ? O2P FMN 152 A 1 HETATM 31 O O3P FMN . . . F 3 56.786 20.036 19.399 1 8.79 ? O3P FMN 152 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 419 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #