data_1AL8 # _model_server_result.job_id Xko-JydAYIHRfmgLbZ1hDg _model_server_result.datetime_utc '2024-12-02 15:29:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1al8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":360}' # _entry.id 1AL8 # _exptl.entry_id 1AL8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1AL8 _cell.length_a 95.4 _cell.length_b 95.4 _cell.length_c 93.5 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AL8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 95.4 95.4 0 3 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 95.4 0 0 4 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 95.4 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 124 n n N1 C10 FMN doub 125 n n C2 O2 FMN doub 126 n n C2 N3 FMN sing 127 n n N3 C4 FMN sing 128 n n N3 HN3 FMN sing 129 n n C4 O4 FMN doub 130 n n C4 C4A FMN sing 131 n n C4A N5 FMN doub 132 n n C4A C10 FMN sing 133 n n N5 C5A FMN sing 134 n n C5A C6 FMN doub 135 n y C5A C9A FMN sing 136 n y C6 C7 FMN sing 137 n y C6 H6 FMN sing 138 n n C7 C7M FMN sing 139 n n C7 C8 FMN doub 140 n y C7M HM71 FMN sing 141 n n C7M HM72 FMN sing 142 n n C7M HM73 FMN sing 143 n n C8 C8M FMN sing 144 n n C8 C9 FMN sing 145 n y C8M HM81 FMN sing 146 n n C8M HM82 FMN sing 147 n n C8M HM83 FMN sing 148 n n C9 C9A FMN doub 149 n y C9 H9 FMN sing 150 n n C9A N10 FMN sing 151 n n N10 C10 FMN sing 152 n n N10 C1' FMN sing 153 n n C1' C2' FMN sing 154 n n C1' "H1'1" FMN sing 155 n n C1' "H1'2" FMN sing 156 n n C2' O2' FMN sing 157 n n C2' C3' FMN sing 158 n n C2' H2' FMN sing 159 n n O2' HO2' FMN sing 160 n n C3' O3' FMN sing 161 n n C3' C4' FMN sing 162 n n C3' H3' FMN sing 163 n n O3' HO3' FMN sing 164 n n C4' O4' FMN sing 165 n n C4' C5' FMN sing 166 n n C4' H4' FMN sing 167 n n O4' HO4' FMN sing 168 n n C5' O5' FMN sing 169 n n C5' "H5'1" FMN sing 170 n n C5' "H5'2" FMN sing 171 n n O5' P FMN sing 172 n n P O1P FMN doub 173 n n P O2P FMN sing 174 n n P O3P FMN sing 175 n n O2P HOP2 FMN sing 176 n n O3P HOP3 FMN sing 177 n n # _atom_sites.entry_id 1AL8 _atom_sites.fract_transf_matrix[1][1] 0.010482 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010482 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010695 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 360 360 FMN FMN . C 3 DHP A 1 361 361 DHP DHP . D 4 HOH A 1 401 401 HOH HOH . D 4 HOH A 2 402 402 HOH HOH . D 4 HOH A 3 403 403 HOH HOH . D 4 HOH A 4 404 404 HOH HOH . D 4 HOH A 5 405 405 HOH HOH . D 4 HOH A 6 406 406 HOH HOH . D 4 HOH A 7 407 407 HOH HOH . D 4 HOH A 8 408 408 HOH HOH . D 4 HOH A 9 409 409 HOH HOH . D 4 HOH A 10 410 410 HOH HOH . D 4 HOH A 11 411 411 HOH HOH . D 4 HOH A 12 412 412 HOH HOH . D 4 HOH A 13 413 413 HOH HOH . D 4 HOH A 14 414 414 HOH HOH . D 4 HOH A 15 415 415 HOH HOH . D 4 HOH A 16 416 416 HOH HOH . D 4 HOH A 17 417 417 HOH HOH . D 4 HOH A 18 418 418 HOH HOH . D 4 HOH A 19 419 419 HOH HOH . D 4 HOH A 20 420 420 HOH HOH . D 4 HOH A 21 421 421 HOH HOH . D 4 HOH A 22 422 422 HOH HOH . D 4 HOH A 23 423 423 HOH HOH . D 4 HOH A 24 424 424 HOH HOH . D 4 HOH A 25 425 425 HOH HOH . D 4 HOH A 26 426 426 HOH HOH . D 4 HOH A 27 427 427 HOH HOH . D 4 HOH A 28 428 428 HOH HOH . D 4 HOH A 29 429 429 HOH HOH . D 4 HOH A 30 430 430 HOH HOH . D 4 HOH A 31 431 431 HOH HOH . D 4 HOH A 32 432 432 HOH HOH . D 4 HOH A 33 433 433 HOH HOH . D 4 HOH A 34 434 434 HOH HOH . D 4 HOH A 35 435 435 HOH HOH . D 4 HOH A 36 436 436 HOH HOH . D 4 HOH A 37 437 437 HOH HOH . D 4 HOH A 38 438 438 HOH HOH . D 4 HOH A 39 439 439 HOH HOH . D 4 HOH A 40 440 440 HOH HOH . D 4 HOH A 41 441 441 HOH HOH . D 4 HOH A 42 442 442 HOH HOH . D 4 HOH A 43 443 443 HOH HOH . D 4 HOH A 44 444 444 HOH HOH . D 4 HOH A 45 445 445 HOH HOH . D 4 HOH A 46 446 446 HOH HOH . D 4 HOH A 47 447 447 HOH HOH . D 4 HOH A 48 448 448 HOH HOH . D 4 HOH A 49 449 449 HOH HOH . D 4 HOH A 50 450 450 HOH HOH . D 4 HOH A 51 451 451 HOH HOH . D 4 HOH A 52 452 452 HOH HOH . D 4 HOH A 53 453 453 HOH HOH . D 4 HOH A 54 454 454 HOH HOH . D 4 HOH A 55 455 455 HOH HOH . D 4 HOH A 56 456 456 HOH HOH . D 4 HOH A 57 457 457 HOH HOH . D 4 HOH A 58 458 458 HOH HOH . D 4 HOH A 59 459 459 HOH HOH . D 4 HOH A 60 460 460 HOH HOH . D 4 HOH A 61 461 461 HOH HOH . D 4 HOH A 62 462 462 HOH HOH . D 4 HOH A 63 463 463 HOH HOH . D 4 HOH A 64 464 464 HOH HOH . D 4 HOH A 65 465 465 HOH HOH . D 4 HOH A 66 466 466 HOH HOH . D 4 HOH A 67 467 467 HOH HOH . D 4 HOH A 68 468 468 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 22.18 69.18 -1.865 1 16.84 ? N1 FMN 360 A 1 HETATM 2 C C2 FMN . . . B 2 21.333 70.079 -1.297 1 14.33 ? C2 FMN 360 A 1 HETATM 3 O O2 FMN . . . B 2 21.379 70.235 -0.094 1 14.08 ? O2 FMN 360 A 1 HETATM 4 N N3 FMN . . . B 2 20.524 70.764 -2.186 1 15.51 ? N3 FMN 360 A 1 HETATM 5 C C4 FMN . . . B 2 20.575 70.641 -3.595 1 17.4 ? C4 FMN 360 A 1 HETATM 6 O O4 FMN . . . B 2 19.758 71.262 -4.287 1 15.66 ? O4 FMN 360 A 1 HETATM 7 C C4A FMN . . . B 2 21.566 69.702 -4.049 1 15.36 ? C4A FMN 360 A 1 HETATM 8 N N5 FMN . . . B 2 21.662 69.585 -5.407 1 15.03 ? N5 FMN 360 A 1 HETATM 9 C C5A FMN . . . B 2 22.459 68.605 -5.924 1 13.83 ? C5A FMN 360 A 1 HETATM 10 C C6 FMN . . . B 2 22.54 68.481 -7.293 1 13.62 ? C6 FMN 360 A 1 HETATM 11 C C7 FMN . . . B 2 23.319 67.486 -7.839 1 11.86 ? C7 FMN 360 A 1 HETATM 12 C C7M FMN . . . B 2 23.512 67.413 -9.33 1 12.77 ? C7M FMN 360 A 1 HETATM 13 C C8 FMN . . . B 2 23.998 66.6 -7.003 1 13.79 ? C8 FMN 360 A 1 HETATM 14 C C8M FMN . . . B 2 24.705 65.363 -7.508 1 9.98 ? C8M FMN 360 A 1 HETATM 15 C C9 FMN . . . B 2 23.901 66.737 -5.654 1 14.7 ? C9 FMN 360 A 1 HETATM 16 C C9A FMN . . . B 2 23.135 67.732 -5.096 1 15.25 ? C9A FMN 360 A 1 HETATM 17 N N10 FMN . . . B 2 23.019 67.83 -3.704 1 15.72 ? N10 FMN 360 A 1 HETATM 18 C C10 FMN . . . B 2 22.282 68.858 -3.201 1 14.96 ? C10 FMN 360 A 1 HETATM 19 C C1' FMN . . . B 2 23.602 66.928 -2.892 1 14.91 ? C1' FMN 360 A 1 HETATM 20 C C2' FMN . . . B 2 22.727 66.054 -1.991 1 16.98 ? C2' FMN 360 A 1 HETATM 21 O O2' FMN . . . B 2 21.416 65.956 -2.31 1 17.73 ? O2' FMN 360 A 1 HETATM 22 C C3' FMN . . . B 2 23.177 64.687 -1.629 1 16.07 ? C3' FMN 360 A 1 HETATM 23 O O3' FMN . . . B 2 24.146 64.835 -0.601 1 15.25 ? O3' FMN 360 A 1 HETATM 24 C C4' FMN . . . B 2 23.52 63.622 -2.684 1 18.77 ? C4' FMN 360 A 1 HETATM 25 O O4' FMN . . . B 2 23.962 63.937 -4.018 1 18.71 ? O4' FMN 360 A 1 HETATM 26 C C5' FMN . . . B 2 24.205 62.388 -2.069 1 18.54 ? C5' FMN 360 A 1 HETATM 27 O O5' FMN . . . B 2 25.083 61.565 -2.892 1 16.17 ? O5' FMN 360 A 1 HETATM 28 P P FMN . . . B 2 24.726 60.581 -4.09 1 12.28 ? P FMN 360 A 1 HETATM 29 O O1P FMN . . . B 2 25.979 59.826 -4.241 1 14.69 ? O1P FMN 360 A 1 HETATM 30 O O2P FMN . . . B 2 24.415 61.552 -5.176 1 17.2 ? O2P FMN 360 A 1 HETATM 31 O O3P FMN . . . B 2 23.558 59.802 -3.612 1 10.94 ? O3P FMN 360 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 889 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 31 #