data_1ALL
#
_model_server_result.job_id            aNv3pjgKVg82uMIlzoMWUg 
_model_server_result.datetime_utc      '2024-11-14 20:48:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1all 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":176}' 
#
_entry.id    1ALL 
#
_exptl.entry_id    1ALL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              588.694 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            PHYCOCYANOBILIN 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1ALL 
_cell.length_a            101.9 
_cell.length_b            101.9 
_cell.length_c            130.6 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1ALL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        182 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA hexameric 6 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F 1 1 
A,B,C,D,E,F 2 1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 50.95 88.247989 0 
3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -50.95 88.247989 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 80 A CYS 84 1_555 C CAC CYC . A CYC 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.864 ? 
covale ? covale2 B C GLY 70 B GLY 71 1_555 B N MEN 71 B MEN 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale3 B C MEN 71 B MEN 72 1_555 B N MET 72 B MET 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale4 B SG CYS 81 B CYS 84 1_555 D CAC CYC . B CYC 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.838 ? 
#
_chem_comp.formula           'C33 H40 N4 O6' 
_chem_comp.formula_weight    588.694 
_chem_comp.id                CYC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              PHYCOCYANOBILIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A CYC doub 70 z n 
CHA C4D CYC sing 71 n n 
CHA HHA CYC sing 72 n n 
NA C1A CYC sing 73 n n 
NA C4A CYC doub 74 n n 
C1A C2A CYC sing 75 n n 
C2A C3A CYC doub 76 n n 
C2A CAA CYC sing 77 n n 
C3A C4A CYC sing 78 n n 
C3A CMA CYC sing 79 n n 
C4A CHB CYC sing 80 n n 
CMA HMA1 CYC sing 81 n n 
CMA HMA2 CYC sing 82 n n 
CMA HMA3 CYC sing 83 n n 
CAA CBA CYC sing 84 n n 
CAA HAA1 CYC sing 85 n n 
CAA HAA2 CYC sing 86 n n 
CBA CGA CYC sing 87 n n 
CBA HBA1 CYC sing 88 n n 
CBA HBA2 CYC sing 89 n n 
CGA O1A CYC doub 90 n n 
CGA O2A CYC sing 91 n n 
O2A H2A CYC sing 92 n n 
CHB C1B CYC doub 93 z n 
CHB HHB CYC sing 94 n n 
NB C1B CYC sing 95 n n 
NB C4B CYC sing 96 n n 
NB HB CYC sing 97 n n 
C1B C2B CYC sing 98 n n 
C2B C3B CYC doub 99 n n 
C2B CMB CYC sing 100 n n 
C3B C4B CYC sing 101 n n 
C3B CAB CYC sing 102 n n 
C4B OB CYC doub 103 n n 
CMB HMB1 CYC sing 104 n n 
CMB HMB2 CYC sing 105 n n 
CMB HMB3 CYC sing 106 n n 
CAB CBB CYC sing 107 n n 
CAB HAB1 CYC sing 108 n n 
CAB HAB2 CYC sing 109 n n 
CBB HBB1 CYC sing 110 n n 
CBB HBB2 CYC sing 111 n n 
CBB HBB3 CYC sing 112 n n 
NC C1C CYC sing 113 n n 
NC C4C CYC sing 114 n n 
NC HC CYC sing 115 n n 
C1C C2C CYC sing 116 n n 
C1C OC CYC doub 117 n n 
C2C C3C CYC sing 118 n n 
C2C CMC CYC sing 119 n n 
C2C H2C CYC sing 120 n n 
C3C C4C CYC sing 121 n n 
C3C CAC CYC sing 122 n n 
C3C H3C CYC sing 123 n n 
C4C CHD CYC doub 124 z n 
CMC HMC1 CYC sing 125 n n 
CMC HMC2 CYC sing 126 n n 
CMC HMC3 CYC sing 127 n n 
CAC CBC CYC sing 128 n n 
CAC HAC1 CYC sing 129 n n 
CAC HAC2 CYC sing 130 n n 
CBC HBC1 CYC sing 131 n n 
CBC HBC2 CYC sing 132 n n 
CBC HBC3 CYC sing 133 n n 
CHD C1D CYC sing 134 n n 
CHD HHD CYC sing 135 n n 
ND C1D CYC sing 136 n y 
ND C4D CYC sing 137 n y 
ND HD CYC sing 138 n n 
C1D C2D CYC doub 139 n y 
C2D C3D CYC sing 140 n y 
C2D CMD CYC sing 141 n n 
C3D C4D CYC doub 142 n y 
C3D CAD CYC sing 143 n n 
CMD HMD1 CYC sing 144 n n 
CMD HMD2 CYC sing 145 n n 
CMD HMD3 CYC sing 146 n n 
CAD CBD CYC sing 147 n n 
CAD HAD1 CYC sing 148 n n 
CAD HAD2 CYC sing 149 n n 
CBD CGD CYC sing 150 n n 
CBD HBD1 CYC sing 151 n n 
CBD HBD2 CYC sing 152 n n 
CGD O1D CYC doub 153 n n 
CGD O2D CYC sing 154 n n 
O2D H2D CYC sing 155 n n 
#
_atom_sites.entry_id                     1ALL 
_atom_sites.fract_transf_matrix[1][1]    0.009814 
_atom_sites.fract_transf_matrix[1][2]    0.005666 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011332 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007657 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 CYC A 1 175 175 CYC CYC . 
D 3 CYC B 1 176 176 CYC CYC . 
E 4 HOH A 1 176 176 HOH HOH . 
E 4 HOH A 2 177 177 HOH HOH . 
E 4 HOH A 3 178 178 HOH HOH . 
E 4 HOH A 4 179 179 HOH HOH . 
E 4 HOH A 5 180 180 HOH HOH . 
E 4 HOH A 6 181 181 HOH HOH . 
E 4 HOH A 7 182 182 HOH HOH . 
E 4 HOH A 8 183 183 HOH HOH . 
E 4 HOH A 9 184 184 HOH HOH . 
E 4 HOH A 10 185 185 HOH HOH . 
E 4 HOH A 11 186 186 HOH HOH . 
E 4 HOH A 12 187 187 HOH HOH . 
E 4 HOH A 13 188 188 HOH HOH . 
E 4 HOH A 14 189 189 HOH HOH . 
E 4 HOH A 15 190 190 HOH HOH . 
E 4 HOH A 16 191 191 HOH HOH . 
E 4 HOH A 17 192 192 HOH HOH . 
E 4 HOH A 18 193 193 HOH HOH . 
E 4 HOH A 19 194 194 HOH HOH . 
E 4 HOH A 20 195 195 HOH HOH . 
E 4 HOH A 21 196 196 HOH HOH . 
E 4 HOH A 22 197 197 HOH HOH . 
E 4 HOH A 23 198 198 HOH HOH . 
E 4 HOH A 24 199 199 HOH HOH . 
E 4 HOH A 25 200 200 HOH HOH . 
E 4 HOH A 26 201 201 HOH HOH . 
E 4 HOH A 27 202 202 HOH HOH . 
E 4 HOH A 28 203 203 HOH HOH . 
E 4 HOH A 29 204 204 HOH HOH . 
E 4 HOH A 30 205 205 HOH HOH . 
E 4 HOH A 31 206 206 HOH HOH . 
E 4 HOH A 32 207 207 HOH HOH . 
E 4 HOH A 33 208 208 HOH HOH . 
E 4 HOH A 34 209 209 HOH HOH . 
E 4 HOH A 35 210 210 HOH HOH . 
E 4 HOH A 36 211 211 HOH HOH . 
E 4 HOH A 37 212 212 HOH HOH . 
E 4 HOH A 38 213 213 HOH HOH . 
F 4 HOH B 1 177 177 HOH HOH . 
F 4 HOH B 2 178 178 HOH HOH . 
F 4 HOH B 3 179 179 HOH HOH . 
F 4 HOH B 4 180 180 HOH HOH . 
F 4 HOH B 5 181 181 HOH HOH . 
F 4 HOH B 6 182 182 HOH HOH . 
F 4 HOH B 7 183 183 HOH HOH . 
F 4 HOH B 8 184 184 HOH HOH . 
F 4 HOH B 9 185 185 HOH HOH . 
F 4 HOH B 10 186 186 HOH HOH . 
F 4 HOH B 11 187 187 HOH HOH . 
F 4 HOH B 12 188 188 HOH HOH . 
F 4 HOH B 13 189 189 HOH HOH . 
F 4 HOH B 14 190 190 HOH HOH . 
F 4 HOH B 15 191 191 HOH HOH . 
F 4 HOH B 16 192 192 HOH HOH . 
F 4 HOH B 17 193 193 HOH HOH . 
F 4 HOH B 18 194 194 HOH HOH . 
F 4 HOH B 19 195 195 HOH HOH . 
F 4 HOH B 20 196 196 HOH HOH . 
F 4 HOH B 21 197 197 HOH HOH . 
F 4 HOH B 22 198 198 HOH HOH . 
F 4 HOH B 23 199 199 HOH HOH . 
F 4 HOH B 24 200 200 HOH HOH . 
F 4 HOH B 25 201 201 HOH HOH . 
F 4 HOH B 26 202 202 HOH HOH . 
F 4 HOH B 27 203 203 HOH HOH . 
F 4 HOH B 28 204 204 HOH HOH . 
F 4 HOH B 29 205 205 HOH HOH . 
F 4 HOH B 30 206 206 HOH HOH . 
F 4 HOH B 31 207 207 HOH HOH . 
F 4 HOH B 32 208 208 HOH HOH . 
F 4 HOH B 33 209 209 HOH HOH . 
F 4 HOH B 34 210 210 HOH HOH . 
F 4 HOH B 35 211 211 HOH HOH . 
F 4 HOH B 36 212 212 HOH HOH . 
F 4 HOH B 37 213 213 HOH HOH . 
F 4 HOH B 38 214 214 HOH HOH . 
F 4 HOH B 39 215 215 HOH HOH . 
F 4 HOH B 40 216 216 HOH HOH . 
F 4 HOH B 41 217 217 HOH HOH . 
F 4 HOH B 42 218 218 HOH HOH . 
F 4 HOH B 43 219 219 HOH HOH . 
F 4 HOH B 44 220 220 HOH HOH . 
F 4 HOH B 45 221 221 HOH HOH . 
F 4 HOH B 46 222 222 HOH HOH . 
F 4 HOH B 47 223 223 HOH HOH . 
F 4 HOH B 48 224 224 HOH HOH . 
F 4 HOH B 49 225 225 HOH HOH . 
F 4 HOH B 50 226 226 HOH HOH . 
F 4 HOH B 51 227 227 HOH HOH . 
F 4 HOH B 52 228 228 HOH HOH . 
F 4 HOH B 53 229 229 HOH HOH . 
F 4 HOH B 54 230 230 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA CYC . . . D 3 -16.808 49.028 19.555 1 16.57 ? CHA CYC 176 B 1 
HETATM 2 N NA CYC . . . D 3 -15.205 47.21 19.552 1 15.7 ? NA CYC 176 B 1 
HETATM 3 C C1A CYC . . . D 3 -15.493 48.532 19.413 1 13.39 ? C1A CYC 176 B 1 
HETATM 4 C C2A CYC . . . D 3 -14.326 49.24 19.101 1 16.05 ? C2A CYC 176 B 1 
HETATM 5 C C3A CYC . . . D 3 -13.29 48.309 19.062 1 16.59 ? C3A CYC 176 B 1 
HETATM 6 C C4A CYC . . . D 3 -13.86 47.057 19.344 1 16.39 ? C4A CYC 176 B 1 
HETATM 7 C CMA CYC . . . D 3 -11.851 48.717 18.78 1 15.1 ? CMA CYC 176 B 1 
HETATM 8 C CAA CYC . . . D 3 -14.212 50.705 18.813 1 20.26 ? CAA CYC 176 B 1 
HETATM 9 C CBA CYC . . . D 3 -13.898 50.99 17.33 1 23.99 ? CBA CYC 176 B 1 
HETATM 10 C CGA CYC . . . D 3 -14.982 50.502 16.358 1 28.5 ? CGA CYC 176 B 1 
HETATM 11 O O1A CYC . . . D 3 -14.625 49.794 15.396 1 30.43 ? O1A CYC 176 B 1 
HETATM 12 O O2A CYC . . . D 3 -16.181 50.835 16.528 1 31.47 ? O2A CYC 176 B 1 
HETATM 13 C CHB CYC . . . D 3 -13.312 45.71 19.425 1 16.51 ? CHB CYC 176 B 1 
HETATM 14 N NB CYC . . . D 3 -11.996 45.84 17.443 1 18.79 ? NB CYC 176 B 1 
HETATM 15 C C1B CYC . . . D 3 -12.38 45.142 18.514 1 18.68 ? C1B CYC 176 B 1 
HETATM 16 C C2B CYC . . . D 3 -11.716 43.893 18.471 1 21.32 ? C2B CYC 176 B 1 
HETATM 17 C C3B CYC . . . D 3 -10.935 43.898 17.291 1 22.36 ? C3B CYC 176 B 1 
HETATM 18 C C4B CYC . . . D 3 -11.136 45.158 16.689 1 21.77 ? C4B CYC 176 B 1 
HETATM 19 C CMB CYC . . . D 3 -11.909 42.763 19.489 1 17.08 ? CMB CYC 176 B 1 
HETATM 20 C CAB CYC . . . D 3 -10.158 42.73 16.704 1 21.67 ? CAB CYC 176 B 1 
HETATM 21 C CBB CYC . . . D 3 -8.962 42.453 17.56 1 21.04 ? CBB CYC 176 B 1 
HETATM 22 O OB CYC . . . D 3 -10.649 45.602 15.651 1 25.97 ? OB CYC 176 B 1 
HETATM 23 N NC CYC . . . D 3 -21.718 46.289 22.912 1 15.54 ? NC CYC 176 B 1 
HETATM 24 C C1C CYC . . . D 3 -22.553 45.642 23.741 1 18.93 ? C1C CYC 176 B 1 
HETATM 25 C C2C CYC . . . D 3 -22.291 44.154 23.871 1 17.08 ? C2C CYC 176 B 1 
HETATM 26 C C3C CYC . . . D 3 -21.067 43.975 23.018 1 20.39 ? C3C CYC 176 B 1 
HETATM 27 C C4C CYC . . . D 3 -20.869 45.383 22.427 1 17.37 ? C4C CYC 176 B 1 
HETATM 28 C CMC CYC . . . D 3 -22.023 43.788 25.33 1 19.05 ? CMC CYC 176 B 1 
HETATM 29 C CAC CYC . . . D 3 -21.188 42.892 21.876 1 17.3 ? CAC CYC 176 B 1 
HETATM 30 C CBC CYC . . . D 3 -21.033 41.551 22.519 1 12.23 ? CBC CYC 176 B 1 
HETATM 31 O OC CYC . . . D 3 -23.462 46.195 24.378 1 24.27 ? OC CYC 176 B 1 
HETATM 32 C CHD CYC . . . D 3 -19.807 45.807 21.542 1 13.2 ? CHD CYC 176 B 1 
HETATM 33 N ND CYC . . . D 3 -18.225 47.267 20.594 1 11.45 ? ND CYC 176 B 1 
HETATM 34 C C1D CYC . . . D 3 -19.498 47.044 20.921 1 13.58 ? C1D CYC 176 B 1 
HETATM 35 C C2D CYC . . . D 3 -20.238 48.195 20.562 1 15.82 ? C2D CYC 176 B 1 
HETATM 36 C C3D CYC . . . D 3 -19.326 49.085 19.972 1 15.72 ? C3D CYC 176 B 1 
HETATM 37 C C4D CYC . . . D 3 -18.063 48.461 20.022 1 14.02 ? C4D CYC 176 B 1 
HETATM 38 C CMD CYC . . . D 3 -21.701 48.551 20.797 1 9.93 ? CMD CYC 176 B 1 
HETATM 39 C CAD CYC . . . D 3 -19.63 50.456 19.449 1 14.22 ? CAD CYC 176 B 1 
HETATM 40 C CBD CYC . . . D 3 -19.264 51.516 20.458 1 19.07 ? CBD CYC 176 B 1 
HETATM 41 C CGD CYC . . . D 3 -19.857 52.868 20.112 1 23.13 ? CGD CYC 176 B 1 
HETATM 42 O O1D CYC . . . D 3 -20.332 53.565 21.028 1 27.32 ? O1D CYC 176 B 1 
HETATM 43 O O2D CYC . . . D 3 -19.854 53.232 18.921 1 24.14 ? O2D CYC 176 B 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           43 
#