data_1ALN # _model_server_result.job_id 5eH7_eL8IVEy7gBNl5E_gw _model_server_result.datetime_utc '2024-10-24 04:22:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1aln # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":295}' # _entry.id 1ALN # _exptl.entry_id 1ALN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 242.229 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-DEAZACYTIDINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1ALN _cell.length_a 120.3 _cell.length_b 120.3 _cell.length_c 78.4 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ALN _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 102 A HIS 102 1_555 B ZN ZN . A ZN 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc2 A SG CYS 129 A CYS 129 1_555 B ZN ZN . A ZN 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc3 A SG CYS 132 A CYS 132 1_555 B ZN ZN . A ZN 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc4 B ZN ZN . A ZN 296 1_555 D O HOH . A HOH 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? # _chem_comp.formula 'C10 H14 N2 O5' _chem_comp.formula_weight 242.229 _chem_comp.id CTD _chem_comp.mon_nstd_flag . _chem_comp.name 3-DEAZACYTIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 CTD sing 70 n n N1 C6 CTD sing 71 n n N1 C1' CTD sing 72 n n C2 C3 CTD sing 73 n n C2 O2 CTD doub 74 n n C3 C4 CTD doub 75 n n C3 H3 CTD sing 76 n n C4 C5 CTD sing 77 n n C4 N4 CTD sing 78 n n C5 C6 CTD doub 79 n n C5 H5 CTD sing 80 n n C6 H6 CTD sing 81 n n N4 HN41 CTD sing 82 n n N4 HN42 CTD sing 83 n n C1' C2' CTD sing 84 n n C1' O4' CTD sing 85 n n C1' H1' CTD sing 86 n n C2' O2' CTD sing 87 n n C2' C3' CTD sing 88 n n C2' H2' CTD sing 89 n n O2' HO2' CTD sing 90 n n C3' C4' CTD sing 91 n n C3' O3' CTD sing 92 n n C3' H3' CTD sing 93 n n C4' O4' CTD sing 94 n n C4' C5' CTD sing 95 n n C4' H4' CTD sing 96 n n O3' HO3' CTD sing 97 n n C5' O5' CTD sing 98 n n C5' "H5'1" CTD sing 99 n n C5' "H5'2" CTD sing 100 n n O5' HO5' CTD sing 101 n n # _atom_sites.entry_id 1ALN _atom_sites.fract_transf_matrix[1][1] 0.008313 _atom_sites.fract_transf_matrix[1][2] 0.004799 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009599 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012755 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 296 296 ZN ZN . C 3 CTD A 1 295 295 CTD CTD . D 4 HOH A 1 503 503 HOH HOH . D 4 HOH A 2 505 505 HOH HOH . D 4 HOH A 3 506 506 HOH HOH . D 4 HOH A 4 509 509 HOH HOH . D 4 HOH A 5 511 511 HOH HOH . D 4 HOH A 6 515 515 HOH HOH . D 4 HOH A 7 516 516 HOH HOH . D 4 HOH A 8 517 517 HOH HOH . D 4 HOH A 9 518 518 HOH HOH . D 4 HOH A 10 522 522 HOH HOH . D 4 HOH A 11 525 525 HOH HOH . D 4 HOH A 12 526 526 HOH HOH . D 4 HOH A 13 527 527 HOH HOH . D 4 HOH A 14 528 528 HOH HOH . D 4 HOH A 15 531 531 HOH HOH . D 4 HOH A 16 533 533 HOH HOH . D 4 HOH A 17 536 536 HOH HOH . D 4 HOH A 18 538 538 HOH HOH . D 4 HOH A 19 539 539 HOH HOH . D 4 HOH A 20 540 540 HOH HOH . D 4 HOH A 21 541 541 HOH HOH . D 4 HOH A 22 542 542 HOH HOH . D 4 HOH A 23 550 550 HOH HOH . D 4 HOH A 24 555 555 HOH HOH . D 4 HOH A 25 557 557 HOH HOH . D 4 HOH A 26 558 558 HOH HOH . D 4 HOH A 27 560 560 HOH HOH . D 4 HOH A 28 561 561 HOH HOH . D 4 HOH A 29 562 562 HOH HOH . D 4 HOH A 30 563 563 HOH HOH . D 4 HOH A 31 564 564 HOH HOH . D 4 HOH A 32 565 565 HOH HOH . D 4 HOH A 33 566 566 HOH HOH . D 4 HOH A 34 568 568 HOH HOH . D 4 HOH A 35 569 569 HOH HOH . D 4 HOH A 36 573 573 HOH HOH . D 4 HOH A 37 575 575 HOH HOH . D 4 HOH A 38 601 601 HOH HOH . D 4 HOH A 39 602 602 HOH HOH . D 4 HOH A 40 603 603 HOH HOH . D 4 HOH A 41 604 604 HOH HOH . D 4 HOH A 42 605 605 HOH HOH . D 4 HOH A 43 607 607 HOH HOH . D 4 HOH A 44 610 610 HOH HOH . D 4 HOH A 45 611 611 HOH HOH . D 4 HOH A 46 613 613 HOH HOH . D 4 HOH A 47 615 615 HOH HOH . D 4 HOH A 48 616 616 HOH HOH . D 4 HOH A 49 700 700 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 CTD . . . C 3 35.234 48.795 9.511 0.98 27.53 ? N1 CTD 295 A 1 HETATM 2 C C2 CTD . . . C 3 36.089 47.97 8.832 0.98 30.64 ? C2 CTD 295 A 1 HETATM 3 C C3 CTD . . . C 3 35.648 46.637 8.615 0.98 34.55 ? C3 CTD 295 A 1 HETATM 4 C C4 CTD . . . C 3 34.389 46.278 8.902 0.98 32.16 ? C4 CTD 295 A 1 HETATM 5 C C5 CTD . . . C 3 33.542 47.193 9.601 0.98 28.6 ? C5 CTD 295 A 1 HETATM 6 C C6 CTD . . . C 3 33.979 48.428 9.9 0.98 26.32 ? C6 CTD 295 A 1 HETATM 7 O O2 CTD . . . C 3 37.145 48.357 8.329 0.98 31.3 ? O2 CTD 295 A 1 HETATM 8 N N4 CTD . . . C 3 33.946 45.083 8.542 0.98 33.84 ? N4 CTD 295 A 1 HETATM 9 C C1' CTD . . . C 3 35.754 50.283 9.862 0.98 23.41 ? C1' CTD 295 A 1 HETATM 10 C C2' CTD . . . C 3 35.661 51.64 9.271 0.98 21.91 ? C2' CTD 295 A 1 HETATM 11 O O2' CTD . . . C 3 36.553 51.751 8.13 0.98 24.72 ? O2' CTD 295 A 1 HETATM 12 C C3' CTD . . . C 3 35.989 52.454 10.432 0.98 22.62 ? C3' CTD 295 A 1 HETATM 13 C C4' CTD . . . C 3 35.504 51.602 11.604 0.98 22.83 ? C4' CTD 295 A 1 HETATM 14 O O4' CTD . . . C 3 35.707 50.234 11.289 0.98 24.82 ? O4' CTD 295 A 1 HETATM 15 O O3' CTD . . . C 3 37.377 52.621 10.545 0.98 20.67 ? O3' CTD 295 A 1 HETATM 16 C C5' CTD . . . C 3 34.147 51.898 12.094 0.98 22.41 ? C5' CTD 295 A 1 HETATM 17 O O5' CTD . . . C 3 33.248 51.652 11.021 0.98 23.24 ? O5' CTD 295 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 17 #