data_1AM0 # _model_server_result.job_id 78w56OA911DQyy1gUmsYKw _model_server_result.datetime_utc '2025-02-04 00:11:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1am0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":41}' # _entry.id 1AM0 # _exptl.entry_id 1AM0 _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1AM0 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AM0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 A N1 G 6 A G 6 1_555 A N3 C 35 A C 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 G 6 A G 6 1_555 A O2 C 35 A C 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 G 6 A G 6 1_555 A N4 C 35 A C 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-G MISPAIR' hydrog4 A N1 G 7 A G 7 1_555 A N7 G 11 A G 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'A-G MISPAIR' hydrog5 A N1 A 12 A A 12 1_555 A N1 G 17 A G 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog6 A N1 G 17 A G 17 1_555 A O6 G 34 A G 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog7 A N2 G 17 A G 17 1_555 A N7 G 34 A G 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N3 U 18 A U 18 1_555 A N1 A 33 A A 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O4 U 18 A U 18 1_555 A N6 A 33 A A 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 40 n n P O2P AMP sing 41 n n P O3P AMP sing 42 n n P O5' AMP sing 43 n n O2P HOP2 AMP sing 44 n n O3P HOP3 AMP sing 45 n n O5' C5' AMP sing 46 n n C5' C4' AMP sing 47 n n C5' "H5'1" AMP sing 48 n n C5' "H5'2" AMP sing 49 n n C4' O4' AMP sing 50 n n C4' C3' AMP sing 51 n n C4' H4' AMP sing 52 n n O4' C1' AMP sing 53 n n C3' O3' AMP sing 54 n n C3' C2' AMP sing 55 n n C3' H3' AMP sing 56 n n O3' HO3' AMP sing 57 n n C2' O2' AMP sing 58 n n C2' C1' AMP sing 59 n n C2' H2' AMP sing 60 n n O2' HO2' AMP sing 61 n n C1' N9 AMP sing 62 n n C1' H1' AMP sing 63 n n N9 C8 AMP sing 64 n y N9 C4 AMP sing 65 n y C8 N7 AMP doub 66 n y C8 H8 AMP sing 67 n n N7 C5 AMP sing 68 n y C5 C6 AMP sing 69 n y C5 C4 AMP doub 70 n y C6 N6 AMP sing 71 n n C6 N1 AMP doub 72 n y N6 HN61 AMP sing 73 n n N6 HN62 AMP sing 74 n n N1 C2 AMP sing 75 n y C2 N3 AMP doub 76 n y C2 H2 AMP sing 77 n n N3 C4 AMP sing 78 n y # _atom_sites.entry_id 1AM0 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id AMP _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 41 _pdbx_nonpoly_scheme.auth_seq_num 41 _pdbx_nonpoly_scheme.pdb_mon_id AMP _pdbx_nonpoly_scheme.auth_mon_id AMP _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . B 2 -1.021 -12.468 4.685 1 0 ? P AMP 41 A 1 HETATM 2 O O1P AMP . . . B 2 -1.444 -11.393 3.76 1 0 ? O1P AMP 41 A 1 HETATM 3 O O2P AMP . . . B 2 -0.717 -13.818 4.16 1 0 ? O2P AMP 41 A 1 HETATM 4 O O3P AMP . . . B 2 -2.156 -12.622 5.816 1 0 ? O3P AMP 41 A 1 HETATM 5 O O5' AMP . . . B 2 0.255 -11.949 5.538 1 0 ? O5' AMP 41 A 1 HETATM 6 C C5' AMP . . . B 2 1.439 -11.472 4.878 1 0 ? C5' AMP 41 A 1 HETATM 7 C C4' AMP . . . B 2 1.655 -9.966 5.046 1 0 ? C4' AMP 41 A 1 HETATM 8 O O4' AMP . . . B 2 0.447 -9.289 4.68 1 0 ? O4' AMP 41 A 1 HETATM 9 C C3' AMP . . . B 2 2.042 -9.384 6.451 1 0 ? C3' AMP 41 A 1 HETATM 10 O O3' AMP . . . B 2 3.397 -9.696 6.743 1 0 ? O3' AMP 41 A 1 HETATM 11 C C2' AMP . . . B 2 1.593 -7.943 6.269 1 0 ? C2' AMP 41 A 1 HETATM 12 O O2' AMP . . . B 2 2.514 -7.275 5.416 1 0 ? O2' AMP 41 A 1 HETATM 13 C C1' AMP . . . B 2 0.219 -8.142 5.514 1 0 ? C1' AMP 41 A 1 HETATM 14 N N9 AMP . . . B 2 -1.043 -8.463 6.236 1 0 ? N9 AMP 41 A 1 HETATM 15 C C8 AMP . . . B 2 -1.497 -9.699 6.6 1 0 ? C8 AMP 41 A 1 HETATM 16 N N7 AMP . . . B 2 -2.643 -9.714 7.205 1 0 ? N7 AMP 41 A 1 HETATM 17 C C5 AMP . . . B 2 -2.993 -8.373 7.252 1 0 ? C5 AMP 41 A 1 HETATM 18 C C6 AMP . . . B 2 -4.115 -7.719 7.775 1 0 ? C6 AMP 41 A 1 HETATM 19 N N6 AMP . . . B 2 -5.103 -8.393 8.377 1 0 ? N6 AMP 41 A 1 HETATM 20 N N1 AMP . . . B 2 -4.151 -6.38 7.654 1 0 ? N1 AMP 41 A 1 HETATM 21 C C2 AMP . . . B 2 -3.142 -5.743 7.056 1 0 ? C2 AMP 41 A 1 HETATM 22 N N3 AMP . . . B 2 -2.038 -6.259 6.532 1 0 ? N3 AMP 41 A 1 HETATM 23 C C4 AMP . . . B 2 -2.027 -7.598 6.665 1 0 ? C4 AMP 41 A 1 HETATM 24 H HOP3 AMP . . . B 2 -2.306 -11.756 6.196 1 0 ? HOP3 AMP 41 A 1 HETATM 25 H "H5'1" AMP . . . B 2 1.353 -11.668 3.808 1 0 ? "H5'1" AMP 41 A 1 HETATM 26 H "H5'2" AMP . . . B 2 2.314 -12.006 5.25 1 0 ? "H5'2" AMP 41 A 1 HETATM 27 H H4' AMP . . . B 2 2.305 -9.667 4.22 1 0 ? H4' AMP 41 A 1 HETATM 28 H H3' AMP . . . B 2 1.697 -9.685 7.438 1 0 ? H3' AMP 41 A 1 HETATM 29 H HO3' AMP . . . B 2 3.558 -9.45 7.658 1 0 ? HO3' AMP 41 A 1 HETATM 30 H H2' AMP . . . B 2 1.57 -7.371 7.217 1 0 ? H2' AMP 41 A 1 HETATM 31 H HO2' AMP . . . B 2 3.368 -7.416 5.823 1 0 ? HO2' AMP 41 A 1 HETATM 32 H H1' AMP . . . B 2 0.039 -7.359 4.772 1 0 ? H1' AMP 41 A 1 HETATM 33 H H8 AMP . . . B 2 -0.951 -10.603 6.376 1 0 ? H8 AMP 41 A 1 HETATM 34 H HN61 AMP . . . B 2 -5.046 -9.4 8.431 1 0 ? HN61 AMP 41 A 1 HETATM 35 H HN62 AMP . . . B 2 -5.9 -7.926 8.78 1 0 ? HN62 AMP 41 A 1 HETATM 36 H H2 AMP . . . B 2 -3.221 -4.654 6.965 1 0 ? H2 AMP 41 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 1975 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 36 #