data_1AM1 # _model_server_result.job_id B2Q9dLwChc_Q6YVc8t62kw _model_server_result.datetime_utc '2024-10-28 14:31:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1am1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 1AM1 # _exptl.entry_id 1AM1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1AM1 _cell.length_a 73.91 _cell.length_b 73.91 _cell.length_c 110.97 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AM1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 73.91 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 1AM1 _atom_sites.fract_transf_matrix[1][1] 0.01353 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01353 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009011 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 300 300 ADP ADP . C 3 HOH A 1 301 301 HOH HOH . C 3 HOH A 2 400 400 HOH HOH . C 3 HOH A 3 401 401 HOH HOH . C 3 HOH A 4 402 402 HOH HOH . C 3 HOH A 5 403 403 HOH HOH . C 3 HOH A 6 404 404 HOH HOH . C 3 HOH A 7 405 405 HOH HOH . C 3 HOH A 8 406 406 HOH HOH . C 3 HOH A 9 407 407 HOH HOH . C 3 HOH A 10 408 408 HOH HOH . C 3 HOH A 11 409 409 HOH HOH . C 3 HOH A 12 411 411 HOH HOH . C 3 HOH A 13 412 412 HOH HOH . C 3 HOH A 14 413 413 HOH HOH . C 3 HOH A 15 414 414 HOH HOH . C 3 HOH A 16 415 415 HOH HOH . C 3 HOH A 17 416 416 HOH HOH . C 3 HOH A 18 417 417 HOH HOH . C 3 HOH A 19 418 418 HOH HOH . C 3 HOH A 20 419 419 HOH HOH . C 3 HOH A 21 420 420 HOH HOH . C 3 HOH A 22 421 421 HOH HOH . C 3 HOH A 23 422 422 HOH HOH . C 3 HOH A 24 423 423 HOH HOH . C 3 HOH A 25 424 424 HOH HOH . C 3 HOH A 26 425 425 HOH HOH . C 3 HOH A 27 426 426 HOH HOH . C 3 HOH A 28 427 427 HOH HOH . C 3 HOH A 29 428 428 HOH HOH . C 3 HOH A 30 429 429 HOH HOH . C 3 HOH A 31 430 430 HOH HOH . C 3 HOH A 32 431 431 HOH HOH . C 3 HOH A 33 432 432 HOH HOH . C 3 HOH A 34 433 433 HOH HOH . C 3 HOH A 35 434 434 HOH HOH . C 3 HOH A 36 435 435 HOH HOH . C 3 HOH A 37 436 436 HOH HOH . C 3 HOH A 38 437 437 HOH HOH . C 3 HOH A 39 438 438 HOH HOH . C 3 HOH A 40 439 439 HOH HOH . C 3 HOH A 41 440 440 HOH HOH . C 3 HOH A 42 441 441 HOH HOH . C 3 HOH A 43 442 442 HOH HOH . C 3 HOH A 44 443 443 HOH HOH . C 3 HOH A 45 444 444 HOH HOH . C 3 HOH A 46 445 445 HOH HOH . C 3 HOH A 47 446 446 HOH HOH . C 3 HOH A 48 447 447 HOH HOH . C 3 HOH A 49 448 448 HOH HOH . C 3 HOH A 50 449 449 HOH HOH . C 3 HOH A 51 450 450 HOH HOH . C 3 HOH A 52 451 451 HOH HOH . C 3 HOH A 53 452 452 HOH HOH . C 3 HOH A 54 453 453 HOH HOH . C 3 HOH A 55 454 454 HOH HOH . C 3 HOH A 56 456 456 HOH HOH . C 3 HOH A 57 457 457 HOH HOH . C 3 HOH A 58 458 458 HOH HOH . C 3 HOH A 59 459 459 HOH HOH . C 3 HOH A 60 460 460 HOH HOH . C 3 HOH A 61 461 461 HOH HOH . C 3 HOH A 62 462 462 HOH HOH . C 3 HOH A 63 463 463 HOH HOH . C 3 HOH A 64 464 464 HOH HOH . C 3 HOH A 65 465 465 HOH HOH . C 3 HOH A 66 466 466 HOH HOH . C 3 HOH A 67 467 467 HOH HOH . C 3 HOH A 68 468 468 HOH HOH . C 3 HOH A 69 469 469 HOH HOH . C 3 HOH A 70 470 470 HOH HOH . C 3 HOH A 71 471 471 HOH HOH . C 3 HOH A 72 472 472 HOH HOH . C 3 HOH A 73 473 473 HOH HOH . C 3 HOH A 74 474 474 HOH HOH . C 3 HOH A 75 475 475 HOH HOH . C 3 HOH A 76 476 476 HOH HOH . C 3 HOH A 77 477 477 HOH HOH . C 3 HOH A 78 478 478 HOH HOH . C 3 HOH A 79 479 479 HOH HOH . C 3 HOH A 80 480 480 HOH HOH . C 3 HOH A 81 481 481 HOH HOH . C 3 HOH A 82 482 482 HOH HOH . C 3 HOH A 83 483 483 HOH HOH . C 3 HOH A 84 484 484 HOH HOH . C 3 HOH A 85 485 485 HOH HOH . C 3 HOH A 86 486 486 HOH HOH . C 3 HOH A 87 487 487 HOH HOH . C 3 HOH A 88 488 488 HOH HOH . C 3 HOH A 89 489 489 HOH HOH . C 3 HOH A 90 490 490 HOH HOH . C 3 HOH A 91 491 491 HOH HOH . C 3 HOH A 92 492 492 HOH HOH . C 3 HOH A 93 493 493 HOH HOH . C 3 HOH A 94 494 494 HOH HOH . C 3 HOH A 95 495 495 HOH HOH . C 3 HOH A 96 496 496 HOH HOH . C 3 HOH A 97 497 497 HOH HOH . C 3 HOH A 98 498 498 HOH HOH . C 3 HOH A 99 499 499 HOH HOH . C 3 HOH A 100 500 500 HOH HOH . C 3 HOH A 101 501 501 HOH HOH . C 3 HOH A 102 502 502 HOH HOH . C 3 HOH A 103 503 503 HOH HOH . C 3 HOH A 104 504 504 HOH HOH . C 3 HOH A 105 505 505 HOH HOH . C 3 HOH A 106 506 506 HOH HOH . C 3 HOH A 107 507 507 HOH HOH . C 3 HOH A 108 508 508 HOH HOH . C 3 HOH A 109 509 509 HOH HOH . C 3 HOH A 110 510 510 HOH HOH . C 3 HOH A 111 511 511 HOH HOH . C 3 HOH A 112 512 512 HOH HOH . C 3 HOH A 113 513 513 HOH HOH . C 3 HOH A 114 514 514 HOH HOH . C 3 HOH A 115 515 515 HOH HOH . C 3 HOH A 116 516 516 HOH HOH . C 3 HOH A 117 517 517 HOH HOH . C 3 HOH A 118 518 518 HOH HOH . C 3 HOH A 119 519 519 HOH HOH . C 3 HOH A 120 520 520 HOH HOH . C 3 HOH A 121 521 521 HOH HOH . C 3 HOH A 122 522 522 HOH HOH . C 3 HOH A 123 523 523 HOH HOH . C 3 HOH A 124 524 524 HOH HOH . C 3 HOH A 125 525 525 HOH HOH . C 3 HOH A 126 526 526 HOH HOH . C 3 HOH A 127 527 527 HOH HOH . C 3 HOH A 128 528 528 HOH HOH . C 3 HOH A 129 529 529 HOH HOH . C 3 HOH A 130 530 530 HOH HOH . C 3 HOH A 131 531 531 HOH HOH . C 3 HOH A 132 532 532 HOH HOH . C 3 HOH A 133 533 533 HOH HOH . C 3 HOH A 134 534 534 HOH HOH . C 3 HOH A 135 535 535 HOH HOH . C 3 HOH A 136 536 536 HOH HOH . C 3 HOH A 137 537 537 HOH HOH . C 3 HOH A 138 538 538 HOH HOH . C 3 HOH A 139 539 539 HOH HOH . C 3 HOH A 140 540 540 HOH HOH . C 3 HOH A 141 541 541 HOH HOH . C 3 HOH A 142 542 542 HOH HOH . C 3 HOH A 143 543 543 HOH HOH . C 3 HOH A 144 544 544 HOH HOH . C 3 HOH A 145 545 545 HOH HOH . C 3 HOH A 146 546 546 HOH HOH . C 3 HOH A 147 547 547 HOH HOH . C 3 HOH A 148 548 548 HOH HOH . C 3 HOH A 149 549 549 HOH HOH . C 3 HOH A 150 550 550 HOH HOH . C 3 HOH A 151 551 551 HOH HOH . C 3 HOH A 152 552 552 HOH HOH . C 3 HOH A 153 553 553 HOH HOH . C 3 HOH A 154 554 554 HOH HOH . C 3 HOH A 155 555 555 HOH HOH . C 3 HOH A 156 556 556 HOH HOH . C 3 HOH A 157 557 557 HOH HOH . C 3 HOH A 158 558 558 HOH HOH . C 3 HOH A 159 559 559 HOH HOH . C 3 HOH A 160 560 560 HOH HOH . C 3 HOH A 161 561 561 HOH HOH . C 3 HOH A 162 562 562 HOH HOH . C 3 HOH A 163 563 563 HOH HOH . C 3 HOH A 164 564 564 HOH HOH . C 3 HOH A 165 565 565 HOH HOH . C 3 HOH A 166 566 566 HOH HOH . C 3 HOH A 167 567 567 HOH HOH . C 3 HOH A 168 568 568 HOH HOH . C 3 HOH A 169 569 569 HOH HOH . C 3 HOH A 170 570 570 HOH HOH . C 3 HOH A 171 571 571 HOH HOH . C 3 HOH A 172 572 572 HOH HOH . C 3 HOH A 173 573 573 HOH HOH . C 3 HOH A 174 575 575 HOH HOH . C 3 HOH A 175 576 576 HOH HOH . C 3 HOH A 176 577 577 HOH HOH . C 3 HOH A 177 578 578 HOH HOH . C 3 HOH A 178 579 579 HOH HOH . C 3 HOH A 179 580 580 HOH HOH . C 3 HOH A 180 581 581 HOH HOH . C 3 HOH A 181 582 582 HOH HOH . C 3 HOH A 182 583 583 HOH HOH . C 3 HOH A 183 584 584 HOH HOH . C 3 HOH A 184 585 585 HOH HOH . C 3 HOH A 185 586 586 HOH HOH . C 3 HOH A 186 587 587 HOH HOH . C 3 HOH A 187 589 589 HOH HOH . C 3 HOH A 188 590 590 HOH HOH . C 3 HOH A 189 591 591 HOH HOH . C 3 HOH A 190 592 592 HOH HOH . C 3 HOH A 191 593 593 HOH HOH . C 3 HOH A 192 594 594 HOH HOH . C 3 HOH A 193 595 595 HOH HOH . C 3 HOH A 194 596 596 HOH HOH . C 3 HOH A 195 597 597 HOH HOH . C 3 HOH A 196 598 598 HOH HOH . C 3 HOH A 197 599 599 HOH HOH . C 3 HOH A 198 600 600 HOH HOH . C 3 HOH A 199 601 601 HOH HOH . C 3 HOH A 200 602 602 HOH HOH . C 3 HOH A 201 603 603 HOH HOH . C 3 HOH A 202 604 604 HOH HOH . C 3 HOH A 203 605 605 HOH HOH . C 3 HOH A 204 606 606 HOH HOH . C 3 HOH A 205 607 607 HOH HOH . C 3 HOH A 206 608 608 HOH HOH . C 3 HOH A 207 609 609 HOH HOH . C 3 HOH A 208 610 610 HOH HOH . C 3 HOH A 209 611 611 HOH HOH . C 3 HOH A 210 613 613 HOH HOH . C 3 HOH A 211 614 614 HOH HOH . C 3 HOH A 212 615 615 HOH HOH . C 3 HOH A 213 616 616 HOH HOH . C 3 HOH A 214 617 617 HOH HOH . C 3 HOH A 215 619 619 HOH HOH . C 3 HOH A 216 620 620 HOH HOH . C 3 HOH A 217 621 621 HOH HOH . C 3 HOH A 218 623 623 HOH HOH . C 3 HOH A 219 624 624 HOH HOH . C 3 HOH A 220 625 625 HOH HOH . C 3 HOH A 221 626 626 HOH HOH . C 3 HOH A 222 627 627 HOH HOH . C 3 HOH A 223 628 628 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . B 2 10.501 -5.055 -3.755 1 64.36 ? PB ADP 300 A 1 HETATM 2 O O1B ADP . . . B 2 9.709 -4.298 -4.792 1 58 ? O1B ADP 300 A 1 HETATM 3 O O2B ADP . . . B 2 11.836 -5.757 -4.361 1 54.11 ? O2B ADP 300 A 1 HETATM 4 O O3B ADP . . . B 2 9.654 -6.056 -2.993 1 61.13 ? O3B ADP 300 A 1 HETATM 5 P PA ADP . . . B 2 11.947 -4.146 -1.444 1 36.01 ? PA ADP 300 A 1 HETATM 6 O O1A ADP . . . B 2 11.153 -3.789 -0.282 1 34.02 ? O1A ADP 300 A 1 HETATM 7 O O2A ADP . . . B 2 12.457 -5.539 -1.353 1 33.24 ? O2A ADP 300 A 1 HETATM 8 O O3A ADP . . . B 2 11.097 -4.018 -2.762 1 43.68 ? O3A ADP 300 A 1 HETATM 9 O O5' ADP . . . B 2 13.088 -3.042 -1.733 1 31.78 ? O5' ADP 300 A 1 HETATM 10 C C5' ADP . . . B 2 12.709 -1.673 -1.789 1 28.46 ? C5' ADP 300 A 1 HETATM 11 C C4' ADP . . . B 2 13.158 -1.048 -3.119 1 27.77 ? C4' ADP 300 A 1 HETATM 12 O O4' ADP . . . B 2 14.551 -0.648 -3.041 1 25.71 ? O4' ADP 300 A 1 HETATM 13 C C3' ADP . . . B 2 13.05 -1.941 -4.347 1 27.23 ? C3' ADP 300 A 1 HETATM 14 O O3' ADP . . . B 2 11.797 -1.839 -5.045 1 36.29 ? O3' ADP 300 A 1 HETATM 15 C C2' ADP . . . B 2 14.21 -1.536 -5.21 1 27.85 ? C2' ADP 300 A 1 HETATM 16 O O2' ADP . . . B 2 13.867 -0.487 -6.116 1 31.76 ? O2' ADP 300 A 1 HETATM 17 C C1' ADP . . . B 2 15.253 -1.123 -4.212 1 24.39 ? C1' ADP 300 A 1 HETATM 18 N N9 ADP . . . B 2 16.267 -2.219 -3.99 1 22.51 ? N9 ADP 300 A 1 HETATM 19 C C8 ADP . . . B 2 16.307 -3.131 -3.006 1 23.18 ? C8 ADP 300 A 1 HETATM 20 N N7 ADP . . . B 2 17.393 -3.911 -3.183 1 20.67 ? N7 ADP 300 A 1 HETATM 21 C C5 ADP . . . B 2 18.038 -3.503 -4.261 1 20.24 ? C5 ADP 300 A 1 HETATM 22 C C6 ADP . . . B 2 19.208 -3.888 -4.962 1 21.13 ? C6 ADP 300 A 1 HETATM 23 N N6 ADP . . . B 2 19.965 -4.923 -4.534 1 18.23 ? N6 ADP 300 A 1 HETATM 24 N N1 ADP . . . B 2 19.597 -3.195 -6.093 1 19.01 ? N1 ADP 300 A 1 HETATM 25 C C2 ADP . . . B 2 18.88 -2.153 -6.579 1 19.37 ? C2 ADP 300 A 1 HETATM 26 N N3 ADP . . . B 2 17.76 -1.782 -5.912 1 19.06 ? N3 ADP 300 A 1 HETATM 27 C C4 ADP . . . B 2 17.313 -2.414 -4.779 1 20.89 ? C4 ADP 300 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 27 #