data_1AMO # _model_server_result.job_id RSwH_CxrG7ktX6lKXkxHCA _model_server_result.datetime_utc '2024-10-14 16:18:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1amo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":750}' # _entry.id 1AMO # _exptl.entry_id 1AMO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1AMO _cell.length_a 103.28 _cell.length_b 116.18 _cell.length_c 119.77 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AMO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 1AMO _atom_sites.fract_transf_matrix[1][1] 0.009682 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008607 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008349 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 750 750 FAD FAD . D 3 FMN A 1 751 751 FMN FMN . E 4 NAP A 1 752 752 NAP NAP . F 2 FAD B 1 750 750 FAD FAD . G 3 FMN B 1 751 751 FMN FMN . H 4 NAP B 1 752 752 NAP NAP . I 5 HOH A 1 753 802 HOH HOH . I 5 HOH A 2 754 803 HOH HOH . I 5 HOH A 3 755 804 HOH HOH . I 5 HOH A 4 756 809 HOH HOH . I 5 HOH A 5 757 811 HOH HOH . I 5 HOH A 6 758 812 HOH HOH . I 5 HOH A 7 759 814 HOH HOH . I 5 HOH A 8 760 821 HOH HOH . I 5 HOH A 9 761 823 HOH HOH . I 5 HOH A 10 762 824 HOH HOH . I 5 HOH A 11 763 827 HOH HOH . I 5 HOH A 12 764 828 HOH HOH . I 5 HOH A 13 765 829 HOH HOH . I 5 HOH A 14 766 831 HOH HOH . I 5 HOH A 15 767 832 HOH HOH . I 5 HOH A 16 768 834 HOH HOH . I 5 HOH A 17 769 836 HOH HOH . I 5 HOH A 18 770 837 HOH HOH . I 5 HOH A 19 771 841 HOH HOH . I 5 HOH A 20 772 842 HOH HOH . I 5 HOH A 21 773 846 HOH HOH . I 5 HOH A 22 774 847 HOH HOH . I 5 HOH A 23 775 848 HOH HOH . I 5 HOH A 24 776 849 HOH HOH . I 5 HOH A 25 777 851 HOH HOH . I 5 HOH A 26 778 852 HOH HOH . I 5 HOH A 27 779 854 HOH HOH . I 5 HOH A 28 780 855 HOH HOH . I 5 HOH A 29 781 856 HOH HOH . I 5 HOH A 30 782 857 HOH HOH . I 5 HOH A 31 783 858 HOH HOH . I 5 HOH A 32 784 859 HOH HOH . I 5 HOH A 33 785 862 HOH HOH . I 5 HOH A 34 786 863 HOH HOH . I 5 HOH A 35 787 865 HOH HOH . I 5 HOH A 36 788 867 HOH HOH . I 5 HOH A 37 789 868 HOH HOH . I 5 HOH A 38 790 870 HOH HOH . I 5 HOH A 39 791 871 HOH HOH . I 5 HOH A 40 792 872 HOH HOH . I 5 HOH A 41 793 873 HOH HOH . I 5 HOH A 42 794 874 HOH HOH . I 5 HOH A 43 795 875 HOH HOH . I 5 HOH A 44 796 876 HOH HOH . I 5 HOH A 45 797 801 HOH HOH . I 5 HOH A 46 798 805 HOH HOH . I 5 HOH A 47 799 806 HOH HOH . I 5 HOH A 48 800 807 HOH HOH . I 5 HOH A 49 801 808 HOH HOH . I 5 HOH A 50 802 810 HOH HOH . I 5 HOH A 51 803 813 HOH HOH . I 5 HOH A 52 804 815 HOH HOH . I 5 HOH A 53 805 816 HOH HOH . I 5 HOH A 54 806 817 HOH HOH . I 5 HOH A 55 807 818 HOH HOH . I 5 HOH A 56 808 819 HOH HOH . I 5 HOH A 57 809 820 HOH HOH . I 5 HOH A 58 810 822 HOH HOH . I 5 HOH A 59 811 825 HOH HOH . I 5 HOH A 60 812 826 HOH HOH . I 5 HOH A 61 813 830 HOH HOH . I 5 HOH A 62 814 833 HOH HOH . I 5 HOH A 63 815 835 HOH HOH . I 5 HOH A 64 816 838 HOH HOH . I 5 HOH A 65 817 839 HOH HOH . I 5 HOH A 66 818 840 HOH HOH . I 5 HOH A 67 819 843 HOH HOH . I 5 HOH A 68 820 844 HOH HOH . I 5 HOH A 69 821 845 HOH HOH . I 5 HOH A 70 822 850 HOH HOH . I 5 HOH A 71 823 853 HOH HOH . I 5 HOH A 72 824 860 HOH HOH . I 5 HOH A 73 825 861 HOH HOH . I 5 HOH A 74 826 864 HOH HOH . I 5 HOH A 75 827 866 HOH HOH . I 5 HOH A 76 828 869 HOH HOH . I 5 HOH A 77 829 877 HOH HOH . I 5 HOH A 78 830 878 HOH HOH . J 5 HOH B 1 753 801 HOH HOH . J 5 HOH B 2 754 805 HOH HOH . J 5 HOH B 3 755 806 HOH HOH . J 5 HOH B 4 756 807 HOH HOH . J 5 HOH B 5 757 808 HOH HOH . J 5 HOH B 6 758 810 HOH HOH . J 5 HOH B 7 759 813 HOH HOH . J 5 HOH B 8 760 815 HOH HOH . J 5 HOH B 9 761 816 HOH HOH . J 5 HOH B 10 762 817 HOH HOH . J 5 HOH B 11 763 818 HOH HOH . J 5 HOH B 12 764 819 HOH HOH . J 5 HOH B 13 765 820 HOH HOH . J 5 HOH B 14 766 822 HOH HOH . J 5 HOH B 15 767 825 HOH HOH . J 5 HOH B 16 768 826 HOH HOH . J 5 HOH B 17 769 830 HOH HOH . J 5 HOH B 18 770 833 HOH HOH . J 5 HOH B 19 771 835 HOH HOH . J 5 HOH B 20 772 838 HOH HOH . J 5 HOH B 21 773 839 HOH HOH . J 5 HOH B 22 774 840 HOH HOH . J 5 HOH B 23 775 843 HOH HOH . J 5 HOH B 24 776 844 HOH HOH . J 5 HOH B 25 777 845 HOH HOH . J 5 HOH B 26 778 850 HOH HOH . J 5 HOH B 27 779 853 HOH HOH . J 5 HOH B 28 780 860 HOH HOH . J 5 HOH B 29 781 861 HOH HOH . J 5 HOH B 30 782 864 HOH HOH . J 5 HOH B 31 783 866 HOH HOH . J 5 HOH B 32 784 869 HOH HOH . J 5 HOH B 33 785 877 HOH HOH . J 5 HOH B 34 786 878 HOH HOH . J 5 HOH B 35 787 802 HOH HOH . J 5 HOH B 36 788 803 HOH HOH . J 5 HOH B 37 789 804 HOH HOH . J 5 HOH B 38 790 809 HOH HOH . J 5 HOH B 39 791 811 HOH HOH . J 5 HOH B 40 792 812 HOH HOH . J 5 HOH B 41 793 814 HOH HOH . J 5 HOH B 42 794 821 HOH HOH . J 5 HOH B 43 795 823 HOH HOH . J 5 HOH B 44 796 824 HOH HOH . J 5 HOH B 45 797 827 HOH HOH . J 5 HOH B 46 798 828 HOH HOH . J 5 HOH B 47 799 829 HOH HOH . J 5 HOH B 48 800 831 HOH HOH . J 5 HOH B 49 801 832 HOH HOH . J 5 HOH B 50 802 834 HOH HOH . J 5 HOH B 51 803 836 HOH HOH . J 5 HOH B 52 804 837 HOH HOH . J 5 HOH B 53 805 841 HOH HOH . J 5 HOH B 54 806 842 HOH HOH . J 5 HOH B 55 807 846 HOH HOH . J 5 HOH B 56 808 847 HOH HOH . J 5 HOH B 57 809 848 HOH HOH . J 5 HOH B 58 810 849 HOH HOH . J 5 HOH B 59 811 851 HOH HOH . J 5 HOH B 60 812 852 HOH HOH . J 5 HOH B 61 813 854 HOH HOH . J 5 HOH B 62 814 855 HOH HOH . J 5 HOH B 63 815 856 HOH HOH . J 5 HOH B 64 816 857 HOH HOH . J 5 HOH B 65 817 858 HOH HOH . J 5 HOH B 66 818 859 HOH HOH . J 5 HOH B 67 819 862 HOH HOH . J 5 HOH B 68 820 863 HOH HOH . J 5 HOH B 69 821 865 HOH HOH . J 5 HOH B 70 822 867 HOH HOH . J 5 HOH B 71 823 868 HOH HOH . J 5 HOH B 72 824 870 HOH HOH . J 5 HOH B 73 825 871 HOH HOH . J 5 HOH B 74 826 872 HOH HOH . J 5 HOH B 75 827 873 HOH HOH . J 5 HOH B 76 828 874 HOH HOH . J 5 HOH B 77 829 875 HOH HOH . J 5 HOH B 78 830 876 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . F 2 33.146 26.123 26.289 1 2 ? PA FAD 750 B 1 HETATM 2 O O1A FAD . . . F 2 31.906 26.811 25.929 1 19.18 ? O1A FAD 750 B 1 HETATM 3 O O2A FAD . . . F 2 34.113 26.699 27.237 1 13.78 ? O2A FAD 750 B 1 HETATM 4 O O5B FAD . . . F 2 32.69 24.733 26.882 1 11.79 ? O5B FAD 750 B 1 HETATM 5 C C5B FAD . . . F 2 33.671 23.902 27.446 1 7.63 ? C5B FAD 750 B 1 HETATM 6 C C4B FAD . . . F 2 33.135 23.149 28.659 1 5.4 ? C4B FAD 750 B 1 HETATM 7 O O4B FAD . . . F 2 32.051 22.283 28.326 1 13.98 ? O4B FAD 750 B 1 HETATM 8 C C3B FAD . . . F 2 34.193 22.18 29.174 1 13.24 ? C3B FAD 750 B 1 HETATM 9 O O3B FAD . . . F 2 35.234 22.95 29.827 1 15.76 ? O3B FAD 750 B 1 HETATM 10 C C2B FAD . . . F 2 33.266 21.482 30.17 1 17.05 ? C2B FAD 750 B 1 HETATM 11 O O2B FAD . . . F 2 32.96 22.482 31.172 1 25.17 ? O2B FAD 750 B 1 HETATM 12 C C1B FAD . . . F 2 32.046 21.201 29.268 1 16.89 ? C1B FAD 750 B 1 HETATM 13 N N9A FAD . . . F 2 31.954 19.912 28.452 1 27.33 ? N9A FAD 750 B 1 HETATM 14 C C8A FAD . . . F 2 32.508 19.569 27.218 1 32.48 ? C8A FAD 750 B 1 HETATM 15 N N7A FAD . . . F 2 32.061 18.448 26.68 1 29.91 ? N7A FAD 750 B 1 HETATM 16 C C5A FAD . . . F 2 31.143 17.984 27.622 1 25.95 ? C5A FAD 750 B 1 HETATM 17 C C6A FAD . . . F 2 30.316 16.847 27.667 1 24.57 ? C6A FAD 750 B 1 HETATM 18 N N6A FAD . . . F 2 30.226 15.947 26.692 1 28.37 ? N6A FAD 750 B 1 HETATM 19 N N1A FAD . . . F 2 29.542 16.694 28.744 1 23.22 ? N1A FAD 750 B 1 HETATM 20 C C2A FAD . . . F 2 29.573 17.598 29.716 1 22.5 ? C2A FAD 750 B 1 HETATM 21 N N3A FAD . . . F 2 30.294 18.705 29.799 1 28.37 ? N3A FAD 750 B 1 HETATM 22 C C4A FAD . . . F 2 31.076 18.855 28.705 1 24.06 ? C4A FAD 750 B 1 HETATM 23 O O2 FAD . . . F 2 41.104 22.225 21.13 1 14.18 ? O2 FAD 750 B 1 HETATM 24 O O4 FAD . . . F 2 45.52 23.325 21.534 1 15.62 ? O4 FAD 750 B 1 HETATM 25 C C4X FAD . . . F 2 44.151 23.801 23.364 1 2.73 ? C4X FAD 750 B 1 HETATM 26 N N5 FAD . . . F 2 45.216 24.346 24.039 1 2 ? N5 FAD 750 B 1 HETATM 27 C C5X FAD . . . F 2 44.874 24.813 25.273 1 5.35 ? C5X FAD 750 B 1 HETATM 28 C C7 FAD . . . F 2 45.785 25.753 27.313 1 2 ? C7 FAD 750 B 1 HETATM 29 C C7M FAD . . . F 2 46.985 26.202 28.105 1 12.62 ? C7M FAD 750 B 1 HETATM 30 C C8M FAD . . . F 2 44.434 26.213 29.362 1 2 ? C8M FAD 750 B 1 HETATM 31 C C9 FAD . . . F 2 43.443 25.264 27.212 1 13.68 ? C9 FAD 750 B 1 HETATM 32 C C9A FAD . . . F 2 43.602 24.787 25.878 1 11.31 ? C9A FAD 750 B 1 HETATM 33 N N10 FAD . . . F 2 42.558 24.2 25.102 1 8.37 ? N10 FAD 750 B 1 HETATM 34 C C10 FAD . . . F 2 42.838 23.683 23.795 1 2 ? C10 FAD 750 B 1 HETATM 35 C C1' FAD . . . F 2 41.188 24.131 25.57 1 6.67 ? C1' FAD 750 B 1 HETATM 36 C C2' FAD . . . F 2 40.517 25.392 25.03 1 12.54 ? C2' FAD 750 B 1 HETATM 37 O O2' FAD . . . F 2 41.087 26.565 25.664 1 13.44 ? O2' FAD 750 B 1 HETATM 38 C C3' FAD . . . F 2 39.004 25.339 25.277 1 7.44 ? C3' FAD 750 B 1 HETATM 39 O O3' FAD . . . F 2 38.631 24.769 26.517 1 12.14 ? O3' FAD 750 B 1 HETATM 40 C C4' FAD . . . F 2 38.272 24.528 24.228 1 3.44 ? C4' FAD 750 B 1 HETATM 41 O O4' FAD . . . F 2 38.652 25.03 22.965 1 10.55 ? O4' FAD 750 B 1 HETATM 42 C C5' FAD . . . F 2 36.759 24.643 24.445 1 10.5 ? C5' FAD 750 B 1 HETATM 43 O O5' FAD . . . F 2 36.262 25.997 24.603 1 5.15 ? O5' FAD 750 B 1 HETATM 44 P P FAD . . . F 2 34.821 26.445 24.106 1 8.16 ? P FAD 750 B 1 HETATM 45 O O1P FAD . . . F 2 34.626 27.886 24.315 1 16.27 ? O1P FAD 750 B 1 HETATM 46 O O2P FAD . . . F 2 34.635 25.9 22.765 1 2 ? O2P FAD 750 B 1 HETATM 47 O O3P FAD . . . F 2 33.835 25.702 25.002 1 2 ? O3P FAD 750 B 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 47 #