data_1AMO # _model_server_result.job_id zXv451DCeH5ANHVB67SfkQ _model_server_result.datetime_utc '2024-10-14 16:26:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1amo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":751}' # _entry.id 1AMO # _exptl.entry_id 1AMO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1AMO _cell.length_a 103.28 _cell.length_b 116.18 _cell.length_c 119.77 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AMO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 174 n n N1 C10 FMN doub 175 n n C2 O2 FMN doub 176 n n C2 N3 FMN sing 177 n n N3 C4 FMN sing 178 n n N3 HN3 FMN sing 179 n n C4 O4 FMN doub 180 n n C4 C4A FMN sing 181 n n C4A N5 FMN doub 182 n n C4A C10 FMN sing 183 n n N5 C5A FMN sing 184 n n C5A C6 FMN doub 185 n y C5A C9A FMN sing 186 n y C6 C7 FMN sing 187 n y C6 H6 FMN sing 188 n n C7 C7M FMN sing 189 n n C7 C8 FMN doub 190 n y C7M HM71 FMN sing 191 n n C7M HM72 FMN sing 192 n n C7M HM73 FMN sing 193 n n C8 C8M FMN sing 194 n n C8 C9 FMN sing 195 n y C8M HM81 FMN sing 196 n n C8M HM82 FMN sing 197 n n C8M HM83 FMN sing 198 n n C9 C9A FMN doub 199 n y C9 H9 FMN sing 200 n n C9A N10 FMN sing 201 n n N10 C10 FMN sing 202 n n N10 C1' FMN sing 203 n n C1' C2' FMN sing 204 n n C1' "H1'1" FMN sing 205 n n C1' "H1'2" FMN sing 206 n n C2' O2' FMN sing 207 n n C2' C3' FMN sing 208 n n C2' H2' FMN sing 209 n n O2' HO2' FMN sing 210 n n C3' O3' FMN sing 211 n n C3' C4' FMN sing 212 n n C3' H3' FMN sing 213 n n O3' HO3' FMN sing 214 n n C4' O4' FMN sing 215 n n C4' C5' FMN sing 216 n n C4' H4' FMN sing 217 n n O4' HO4' FMN sing 218 n n C5' O5' FMN sing 219 n n C5' "H5'1" FMN sing 220 n n C5' "H5'2" FMN sing 221 n n O5' P FMN sing 222 n n P O1P FMN doub 223 n n P O2P FMN sing 224 n n P O3P FMN sing 225 n n O2P HOP2 FMN sing 226 n n O3P HOP3 FMN sing 227 n n # _atom_sites.entry_id 1AMO _atom_sites.fract_transf_matrix[1][1] 0.009682 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008607 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008349 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 750 750 FAD FAD . D 3 FMN A 1 751 751 FMN FMN . E 4 NAP A 1 752 752 NAP NAP . F 2 FAD B 1 750 750 FAD FAD . G 3 FMN B 1 751 751 FMN FMN . H 4 NAP B 1 752 752 NAP NAP . I 5 HOH A 1 753 802 HOH HOH . I 5 HOH A 2 754 803 HOH HOH . I 5 HOH A 3 755 804 HOH HOH . I 5 HOH A 4 756 809 HOH HOH . I 5 HOH A 5 757 811 HOH HOH . I 5 HOH A 6 758 812 HOH HOH . I 5 HOH A 7 759 814 HOH HOH . I 5 HOH A 8 760 821 HOH HOH . I 5 HOH A 9 761 823 HOH HOH . I 5 HOH A 10 762 824 HOH HOH . I 5 HOH A 11 763 827 HOH HOH . I 5 HOH A 12 764 828 HOH HOH . I 5 HOH A 13 765 829 HOH HOH . I 5 HOH A 14 766 831 HOH HOH . I 5 HOH A 15 767 832 HOH HOH . I 5 HOH A 16 768 834 HOH HOH . I 5 HOH A 17 769 836 HOH HOH . I 5 HOH A 18 770 837 HOH HOH . I 5 HOH A 19 771 841 HOH HOH . I 5 HOH A 20 772 842 HOH HOH . I 5 HOH A 21 773 846 HOH HOH . I 5 HOH A 22 774 847 HOH HOH . I 5 HOH A 23 775 848 HOH HOH . I 5 HOH A 24 776 849 HOH HOH . I 5 HOH A 25 777 851 HOH HOH . I 5 HOH A 26 778 852 HOH HOH . I 5 HOH A 27 779 854 HOH HOH . I 5 HOH A 28 780 855 HOH HOH . I 5 HOH A 29 781 856 HOH HOH . I 5 HOH A 30 782 857 HOH HOH . I 5 HOH A 31 783 858 HOH HOH . I 5 HOH A 32 784 859 HOH HOH . I 5 HOH A 33 785 862 HOH HOH . I 5 HOH A 34 786 863 HOH HOH . I 5 HOH A 35 787 865 HOH HOH . I 5 HOH A 36 788 867 HOH HOH . I 5 HOH A 37 789 868 HOH HOH . I 5 HOH A 38 790 870 HOH HOH . I 5 HOH A 39 791 871 HOH HOH . I 5 HOH A 40 792 872 HOH HOH . I 5 HOH A 41 793 873 HOH HOH . I 5 HOH A 42 794 874 HOH HOH . I 5 HOH A 43 795 875 HOH HOH . I 5 HOH A 44 796 876 HOH HOH . I 5 HOH A 45 797 801 HOH HOH . I 5 HOH A 46 798 805 HOH HOH . I 5 HOH A 47 799 806 HOH HOH . I 5 HOH A 48 800 807 HOH HOH . I 5 HOH A 49 801 808 HOH HOH . I 5 HOH A 50 802 810 HOH HOH . I 5 HOH A 51 803 813 HOH HOH . I 5 HOH A 52 804 815 HOH HOH . I 5 HOH A 53 805 816 HOH HOH . I 5 HOH A 54 806 817 HOH HOH . I 5 HOH A 55 807 818 HOH HOH . I 5 HOH A 56 808 819 HOH HOH . I 5 HOH A 57 809 820 HOH HOH . I 5 HOH A 58 810 822 HOH HOH . I 5 HOH A 59 811 825 HOH HOH . I 5 HOH A 60 812 826 HOH HOH . I 5 HOH A 61 813 830 HOH HOH . I 5 HOH A 62 814 833 HOH HOH . I 5 HOH A 63 815 835 HOH HOH . I 5 HOH A 64 816 838 HOH HOH . I 5 HOH A 65 817 839 HOH HOH . I 5 HOH A 66 818 840 HOH HOH . I 5 HOH A 67 819 843 HOH HOH . I 5 HOH A 68 820 844 HOH HOH . I 5 HOH A 69 821 845 HOH HOH . I 5 HOH A 70 822 850 HOH HOH . I 5 HOH A 71 823 853 HOH HOH . I 5 HOH A 72 824 860 HOH HOH . I 5 HOH A 73 825 861 HOH HOH . I 5 HOH A 74 826 864 HOH HOH . I 5 HOH A 75 827 866 HOH HOH . I 5 HOH A 76 828 869 HOH HOH . I 5 HOH A 77 829 877 HOH HOH . I 5 HOH A 78 830 878 HOH HOH . J 5 HOH B 1 753 801 HOH HOH . J 5 HOH B 2 754 805 HOH HOH . J 5 HOH B 3 755 806 HOH HOH . J 5 HOH B 4 756 807 HOH HOH . J 5 HOH B 5 757 808 HOH HOH . J 5 HOH B 6 758 810 HOH HOH . J 5 HOH B 7 759 813 HOH HOH . J 5 HOH B 8 760 815 HOH HOH . J 5 HOH B 9 761 816 HOH HOH . J 5 HOH B 10 762 817 HOH HOH . J 5 HOH B 11 763 818 HOH HOH . J 5 HOH B 12 764 819 HOH HOH . J 5 HOH B 13 765 820 HOH HOH . J 5 HOH B 14 766 822 HOH HOH . J 5 HOH B 15 767 825 HOH HOH . J 5 HOH B 16 768 826 HOH HOH . J 5 HOH B 17 769 830 HOH HOH . J 5 HOH B 18 770 833 HOH HOH . J 5 HOH B 19 771 835 HOH HOH . J 5 HOH B 20 772 838 HOH HOH . J 5 HOH B 21 773 839 HOH HOH . J 5 HOH B 22 774 840 HOH HOH . J 5 HOH B 23 775 843 HOH HOH . J 5 HOH B 24 776 844 HOH HOH . J 5 HOH B 25 777 845 HOH HOH . J 5 HOH B 26 778 850 HOH HOH . J 5 HOH B 27 779 853 HOH HOH . J 5 HOH B 28 780 860 HOH HOH . J 5 HOH B 29 781 861 HOH HOH . J 5 HOH B 30 782 864 HOH HOH . J 5 HOH B 31 783 866 HOH HOH . J 5 HOH B 32 784 869 HOH HOH . J 5 HOH B 33 785 877 HOH HOH . J 5 HOH B 34 786 878 HOH HOH . J 5 HOH B 35 787 802 HOH HOH . J 5 HOH B 36 788 803 HOH HOH . J 5 HOH B 37 789 804 HOH HOH . J 5 HOH B 38 790 809 HOH HOH . J 5 HOH B 39 791 811 HOH HOH . J 5 HOH B 40 792 812 HOH HOH . J 5 HOH B 41 793 814 HOH HOH . J 5 HOH B 42 794 821 HOH HOH . J 5 HOH B 43 795 823 HOH HOH . J 5 HOH B 44 796 824 HOH HOH . J 5 HOH B 45 797 827 HOH HOH . J 5 HOH B 46 798 828 HOH HOH . J 5 HOH B 47 799 829 HOH HOH . J 5 HOH B 48 800 831 HOH HOH . J 5 HOH B 49 801 832 HOH HOH . J 5 HOH B 50 802 834 HOH HOH . J 5 HOH B 51 803 836 HOH HOH . J 5 HOH B 52 804 837 HOH HOH . J 5 HOH B 53 805 841 HOH HOH . J 5 HOH B 54 806 842 HOH HOH . J 5 HOH B 55 807 846 HOH HOH . J 5 HOH B 56 808 847 HOH HOH . J 5 HOH B 57 809 848 HOH HOH . J 5 HOH B 58 810 849 HOH HOH . J 5 HOH B 59 811 851 HOH HOH . J 5 HOH B 60 812 852 HOH HOH . J 5 HOH B 61 813 854 HOH HOH . J 5 HOH B 62 814 855 HOH HOH . J 5 HOH B 63 815 856 HOH HOH . J 5 HOH B 64 816 857 HOH HOH . J 5 HOH B 65 817 858 HOH HOH . J 5 HOH B 66 818 859 HOH HOH . J 5 HOH B 67 819 862 HOH HOH . J 5 HOH B 68 820 863 HOH HOH . J 5 HOH B 69 821 865 HOH HOH . J 5 HOH B 70 822 867 HOH HOH . J 5 HOH B 71 823 868 HOH HOH . J 5 HOH B 72 824 870 HOH HOH . J 5 HOH B 73 825 871 HOH HOH . J 5 HOH B 74 826 872 HOH HOH . J 5 HOH B 75 827 873 HOH HOH . J 5 HOH B 76 828 874 HOH HOH . J 5 HOH B 77 829 875 HOH HOH . J 5 HOH B 78 830 876 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . D 3 7.143 -0.24 40.101 1 11.2 ? N1 FMN 751 A 1 HETATM 2 C C2 FMN . . . D 3 6.362 0.061 41.143 1 8.46 ? C2 FMN 751 A 1 HETATM 3 O O2 FMN . . . D 3 6.842 0.242 42.26 1 10.64 ? O2 FMN 751 A 1 HETATM 4 N N3 FMN . . . D 3 5.029 0.138 40.861 1 6.51 ? N3 FMN 751 A 1 HETATM 5 C C4 FMN . . . D 3 4.425 -0.052 39.627 1 11.37 ? C4 FMN 751 A 1 HETATM 6 O O4 FMN . . . D 3 3.196 -0.018 39.554 1 17.86 ? O4 FMN 751 A 1 HETATM 7 C C4A FMN . . . D 3 5.307 -0.347 38.562 1 5.89 ? C4A FMN 751 A 1 HETATM 8 N N5 FMN . . . D 3 4.727 -0.481 37.347 1 14.59 ? N5 FMN 751 A 1 HETATM 9 C C5A FMN . . . D 3 5.652 -0.703 36.377 1 5.74 ? C5A FMN 751 A 1 HETATM 10 C C6 FMN . . . D 3 5.144 -0.771 35.073 1 9.22 ? C6 FMN 751 A 1 HETATM 11 C C7 FMN . . . D 3 5.951 -0.938 34.003 1 6.7 ? C7 FMN 751 A 1 HETATM 12 C C7M FMN . . . D 3 5.369 -0.979 32.612 1 15.22 ? C7M FMN 751 A 1 HETATM 13 C C8 FMN . . . D 3 7.325 -1.051 34.195 1 6.12 ? C8 FMN 751 A 1 HETATM 14 C C8M FMN . . . D 3 8.269 -1.192 33.018 1 17.18 ? C8M FMN 751 A 1 HETATM 15 C C9 FMN . . . D 3 7.832 -0.997 35.427 1 2 ? C9 FMN 751 A 1 HETATM 16 C C9A FMN . . . D 3 7.035 -0.824 36.535 1 2 ? C9A FMN 751 A 1 HETATM 17 N N10 FMN . . . D 3 7.555 -0.715 37.815 1 2 ? N10 FMN 751 A 1 HETATM 18 C C10 FMN . . . D 3 6.657 -0.438 38.875 1 2 ? C10 FMN 751 A 1 HETATM 19 C C1' FMN . . . D 3 8.982 -1 38.052 1 7.57 ? C1' FMN 751 A 1 HETATM 20 C C2' FMN . . . D 3 9.459 -2.456 38.171 1 5.38 ? C2' FMN 751 A 1 HETATM 21 O O2' FMN . . . D 3 8.817 -3.17 39.223 1 10.07 ? O2' FMN 751 A 1 HETATM 22 C C3' FMN . . . D 3 10.986 -2.501 38.389 1 11 ? C3' FMN 751 A 1 HETATM 23 O O3' FMN . . . D 3 11.691 -2.156 37.204 1 7.77 ? O3' FMN 751 A 1 HETATM 24 C C4' FMN . . . D 3 11.58 -3.865 38.793 1 14.61 ? C4' FMN 751 A 1 HETATM 25 O O4' FMN . . . D 3 12.995 -3.742 38.898 1 15.54 ? O4' FMN 751 A 1 HETATM 26 C C5' FMN . . . D 3 11.258 -4.935 37.746 1 21.51 ? C5' FMN 751 A 1 HETATM 27 O O5' FMN . . . D 3 11.788 -6.238 38.057 1 19.2 ? O5' FMN 751 A 1 HETATM 28 P P FMN . . . D 3 11.755 -7.432 37.013 1 15.75 ? P FMN 751 A 1 HETATM 29 O O1P FMN . . . D 3 11.933 -8.608 37.87 1 22.63 ? O1P FMN 751 A 1 HETATM 30 O O2P FMN . . . D 3 12.889 -7.128 36.129 1 14.38 ? O2P FMN 751 A 1 HETATM 31 O O3P FMN . . . D 3 10.418 -7.332 36.417 1 12.04 ? O3P FMN 751 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #