data_1AMO # _model_server_result.job_id ILlCGp1QAkslkipLIPipjg _model_server_result.datetime_utc '2024-11-26 22:04:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1amo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":752}' # _entry.id 1AMO # _exptl.entry_id 1AMO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1AMO _cell.length_a 103.28 _cell.length_b 116.18 _cell.length_c 119.77 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AMO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 382 n n PA O2A NAP sing 383 n n PA O5B NAP sing 384 n n PA O3 NAP sing 385 n n O2A HOA2 NAP sing 386 n n O5B C5B NAP sing 387 n n C5B C4B NAP sing 388 n n C5B H51A NAP sing 389 n n C5B H52A NAP sing 390 n n C4B O4B NAP sing 391 n n C4B C3B NAP sing 392 n n C4B H4B NAP sing 393 n n O4B C1B NAP sing 394 n n C3B O3B NAP sing 395 n n C3B C2B NAP sing 396 n n C3B H3B NAP sing 397 n n O3B HO3A NAP sing 398 n n C2B O2B NAP sing 399 n n C2B C1B NAP sing 400 n n C2B H2B NAP sing 401 n n O2B P2B NAP sing 402 n n C1B N9A NAP sing 403 n n C1B H1B NAP sing 404 n n N9A C8A NAP sing 405 n y N9A C4A NAP sing 406 n y C8A N7A NAP doub 407 n y C8A H8A NAP sing 408 n n N7A C5A NAP sing 409 n y C5A C6A NAP sing 410 n y C5A C4A NAP doub 411 n y C6A N6A NAP sing 412 n n C6A N1A NAP doub 413 n y N6A H61A NAP sing 414 n n N6A H62A NAP sing 415 n n N1A C2A NAP sing 416 n y C2A N3A NAP doub 417 n y C2A H2A NAP sing 418 n n N3A C4A NAP sing 419 n y O3 PN NAP sing 420 n n PN O1N NAP doub 421 n n PN O2N NAP sing 422 n n PN O5D NAP sing 423 n n O5D C5D NAP sing 424 n n C5D C4D NAP sing 425 n n C5D H51N NAP sing 426 n n C5D H52N NAP sing 427 n n C4D O4D NAP sing 428 n n C4D C3D NAP sing 429 n n C4D H4D NAP sing 430 n n O4D C1D NAP sing 431 n n C3D O3D NAP sing 432 n n C3D C2D NAP sing 433 n n C3D H3D NAP sing 434 n n O3D HO3N NAP sing 435 n n C2D O2D NAP sing 436 n n C2D C1D NAP sing 437 n n C2D H2D NAP sing 438 n n O2D HO2N NAP sing 439 n n C1D N1N NAP sing 440 n n C1D H1D NAP sing 441 n n N1N C2N NAP sing 442 n y N1N C6N NAP doub 443 n y C2N C3N NAP doub 444 n y C2N H2N NAP sing 445 n n C3N C7N NAP sing 446 n n C3N C4N NAP sing 447 n y C7N O7N NAP doub 448 n n C7N N7N NAP sing 449 n n N7N H71N NAP sing 450 n n N7N H72N NAP sing 451 n n C4N C5N NAP doub 452 n y C4N H4N NAP sing 453 n n C5N C6N NAP sing 454 n y C5N H5N NAP sing 455 n n C6N H6N NAP sing 456 n n P2B O1X NAP doub 457 n n P2B O2X NAP sing 458 n n P2B O3X NAP sing 459 n n O2X HOP2 NAP sing 460 n n O3X HOP3 NAP sing 461 n n # _atom_sites.entry_id 1AMO _atom_sites.fract_transf_matrix[1][1] 0.009682 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008607 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008349 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 750 750 FAD FAD . D 3 FMN A 1 751 751 FMN FMN . E 4 NAP A 1 752 752 NAP NAP . F 2 FAD B 1 750 750 FAD FAD . G 3 FMN B 1 751 751 FMN FMN . H 4 NAP B 1 752 752 NAP NAP . I 5 HOH A 1 753 802 HOH HOH . I 5 HOH A 2 754 803 HOH HOH . I 5 HOH A 3 755 804 HOH HOH . I 5 HOH A 4 756 809 HOH HOH . I 5 HOH A 5 757 811 HOH HOH . I 5 HOH A 6 758 812 HOH HOH . I 5 HOH A 7 759 814 HOH HOH . I 5 HOH A 8 760 821 HOH HOH . I 5 HOH A 9 761 823 HOH HOH . I 5 HOH A 10 762 824 HOH HOH . I 5 HOH A 11 763 827 HOH HOH . I 5 HOH A 12 764 828 HOH HOH . I 5 HOH A 13 765 829 HOH HOH . I 5 HOH A 14 766 831 HOH HOH . I 5 HOH A 15 767 832 HOH HOH . I 5 HOH A 16 768 834 HOH HOH . I 5 HOH A 17 769 836 HOH HOH . I 5 HOH A 18 770 837 HOH HOH . I 5 HOH A 19 771 841 HOH HOH . I 5 HOH A 20 772 842 HOH HOH . I 5 HOH A 21 773 846 HOH HOH . I 5 HOH A 22 774 847 HOH HOH . I 5 HOH A 23 775 848 HOH HOH . I 5 HOH A 24 776 849 HOH HOH . I 5 HOH A 25 777 851 HOH HOH . I 5 HOH A 26 778 852 HOH HOH . I 5 HOH A 27 779 854 HOH HOH . I 5 HOH A 28 780 855 HOH HOH . I 5 HOH A 29 781 856 HOH HOH . I 5 HOH A 30 782 857 HOH HOH . I 5 HOH A 31 783 858 HOH HOH . I 5 HOH A 32 784 859 HOH HOH . I 5 HOH A 33 785 862 HOH HOH . I 5 HOH A 34 786 863 HOH HOH . I 5 HOH A 35 787 865 HOH HOH . I 5 HOH A 36 788 867 HOH HOH . I 5 HOH A 37 789 868 HOH HOH . I 5 HOH A 38 790 870 HOH HOH . I 5 HOH A 39 791 871 HOH HOH . I 5 HOH A 40 792 872 HOH HOH . I 5 HOH A 41 793 873 HOH HOH . I 5 HOH A 42 794 874 HOH HOH . I 5 HOH A 43 795 875 HOH HOH . I 5 HOH A 44 796 876 HOH HOH . I 5 HOH A 45 797 801 HOH HOH . I 5 HOH A 46 798 805 HOH HOH . I 5 HOH A 47 799 806 HOH HOH . I 5 HOH A 48 800 807 HOH HOH . I 5 HOH A 49 801 808 HOH HOH . I 5 HOH A 50 802 810 HOH HOH . I 5 HOH A 51 803 813 HOH HOH . I 5 HOH A 52 804 815 HOH HOH . I 5 HOH A 53 805 816 HOH HOH . I 5 HOH A 54 806 817 HOH HOH . I 5 HOH A 55 807 818 HOH HOH . I 5 HOH A 56 808 819 HOH HOH . I 5 HOH A 57 809 820 HOH HOH . I 5 HOH A 58 810 822 HOH HOH . I 5 HOH A 59 811 825 HOH HOH . I 5 HOH A 60 812 826 HOH HOH . I 5 HOH A 61 813 830 HOH HOH . I 5 HOH A 62 814 833 HOH HOH . I 5 HOH A 63 815 835 HOH HOH . I 5 HOH A 64 816 838 HOH HOH . I 5 HOH A 65 817 839 HOH HOH . I 5 HOH A 66 818 840 HOH HOH . I 5 HOH A 67 819 843 HOH HOH . I 5 HOH A 68 820 844 HOH HOH . I 5 HOH A 69 821 845 HOH HOH . I 5 HOH A 70 822 850 HOH HOH . I 5 HOH A 71 823 853 HOH HOH . I 5 HOH A 72 824 860 HOH HOH . I 5 HOH A 73 825 861 HOH HOH . I 5 HOH A 74 826 864 HOH HOH . I 5 HOH A 75 827 866 HOH HOH . I 5 HOH A 76 828 869 HOH HOH . I 5 HOH A 77 829 877 HOH HOH . I 5 HOH A 78 830 878 HOH HOH . J 5 HOH B 1 753 801 HOH HOH . J 5 HOH B 2 754 805 HOH HOH . J 5 HOH B 3 755 806 HOH HOH . J 5 HOH B 4 756 807 HOH HOH . J 5 HOH B 5 757 808 HOH HOH . J 5 HOH B 6 758 810 HOH HOH . J 5 HOH B 7 759 813 HOH HOH . J 5 HOH B 8 760 815 HOH HOH . J 5 HOH B 9 761 816 HOH HOH . J 5 HOH B 10 762 817 HOH HOH . J 5 HOH B 11 763 818 HOH HOH . J 5 HOH B 12 764 819 HOH HOH . J 5 HOH B 13 765 820 HOH HOH . J 5 HOH B 14 766 822 HOH HOH . J 5 HOH B 15 767 825 HOH HOH . J 5 HOH B 16 768 826 HOH HOH . J 5 HOH B 17 769 830 HOH HOH . J 5 HOH B 18 770 833 HOH HOH . J 5 HOH B 19 771 835 HOH HOH . J 5 HOH B 20 772 838 HOH HOH . J 5 HOH B 21 773 839 HOH HOH . J 5 HOH B 22 774 840 HOH HOH . J 5 HOH B 23 775 843 HOH HOH . J 5 HOH B 24 776 844 HOH HOH . J 5 HOH B 25 777 845 HOH HOH . J 5 HOH B 26 778 850 HOH HOH . J 5 HOH B 27 779 853 HOH HOH . J 5 HOH B 28 780 860 HOH HOH . J 5 HOH B 29 781 861 HOH HOH . J 5 HOH B 30 782 864 HOH HOH . J 5 HOH B 31 783 866 HOH HOH . J 5 HOH B 32 784 869 HOH HOH . J 5 HOH B 33 785 877 HOH HOH . J 5 HOH B 34 786 878 HOH HOH . J 5 HOH B 35 787 802 HOH HOH . J 5 HOH B 36 788 803 HOH HOH . J 5 HOH B 37 789 804 HOH HOH . J 5 HOH B 38 790 809 HOH HOH . J 5 HOH B 39 791 811 HOH HOH . J 5 HOH B 40 792 812 HOH HOH . J 5 HOH B 41 793 814 HOH HOH . J 5 HOH B 42 794 821 HOH HOH . J 5 HOH B 43 795 823 HOH HOH . J 5 HOH B 44 796 824 HOH HOH . J 5 HOH B 45 797 827 HOH HOH . J 5 HOH B 46 798 828 HOH HOH . J 5 HOH B 47 799 829 HOH HOH . J 5 HOH B 48 800 831 HOH HOH . J 5 HOH B 49 801 832 HOH HOH . J 5 HOH B 50 802 834 HOH HOH . J 5 HOH B 51 803 836 HOH HOH . J 5 HOH B 52 804 837 HOH HOH . J 5 HOH B 53 805 841 HOH HOH . J 5 HOH B 54 806 842 HOH HOH . J 5 HOH B 55 807 846 HOH HOH . J 5 HOH B 56 808 847 HOH HOH . J 5 HOH B 57 809 848 HOH HOH . J 5 HOH B 58 810 849 HOH HOH . J 5 HOH B 59 811 851 HOH HOH . J 5 HOH B 60 812 852 HOH HOH . J 5 HOH B 61 813 854 HOH HOH . J 5 HOH B 62 814 855 HOH HOH . J 5 HOH B 63 815 856 HOH HOH . J 5 HOH B 64 816 857 HOH HOH . J 5 HOH B 65 817 858 HOH HOH . J 5 HOH B 66 818 859 HOH HOH . J 5 HOH B 67 819 862 HOH HOH . J 5 HOH B 68 820 863 HOH HOH . J 5 HOH B 69 821 865 HOH HOH . J 5 HOH B 70 822 867 HOH HOH . J 5 HOH B 71 823 868 HOH HOH . J 5 HOH B 72 824 870 HOH HOH . J 5 HOH B 73 825 871 HOH HOH . J 5 HOH B 74 826 872 HOH HOH . J 5 HOH B 75 827 873 HOH HOH . J 5 HOH B 76 828 874 HOH HOH . J 5 HOH B 77 829 875 HOH HOH . J 5 HOH B 78 830 876 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . H 4 40.811 12.403 21.973 1 22.78 ? PA NAP 752 B 1 HETATM 2 O O1A NAP . . . H 4 41.23 12.957 20.656 1 33.41 ? O1A NAP 752 B 1 HETATM 3 O O2A NAP . . . H 4 39.658 11.488 22.042 1 33.15 ? O2A NAP 752 B 1 HETATM 4 O O5B NAP . . . H 4 41.986 11.62 22.687 1 18.64 ? O5B NAP 752 B 1 HETATM 5 C C5B NAP . . . H 4 43.138 11.27 21.919 1 13.25 ? C5B NAP 752 B 1 HETATM 6 C C4B NAP . . . H 4 43.556 9.807 22.105 1 14.53 ? C4B NAP 752 B 1 HETATM 7 O O4B NAP . . . H 4 43.979 9.496 23.439 1 17.39 ? O4B NAP 752 B 1 HETATM 8 C C3B NAP . . . H 4 42.552 8.737 21.776 1 2 ? C3B NAP 752 B 1 HETATM 9 O O3B NAP . . . H 4 43.29 7.749 21.072 1 10.18 ? O3B NAP 752 B 1 HETATM 10 C C2B NAP . . . H 4 42.06 8.246 23.128 1 10.2 ? C2B NAP 752 B 1 HETATM 11 O O2B NAP . . . H 4 41.567 6.898 23.018 1 17.15 ? O2B NAP 752 B 1 HETATM 12 C C1B NAP . . . H 4 43.359 8.292 23.889 1 8.07 ? C1B NAP 752 B 1 HETATM 13 N N9A NAP . . . H 4 43.342 8.324 25.371 1 2 ? N9A NAP 752 B 1 HETATM 14 C C8A NAP . . . H 4 42.338 8.327 26.266 1 2 ? C8A NAP 752 B 1 HETATM 15 N N7A NAP . . . H 4 42.807 8.125 27.523 1 5.9 ? N7A NAP 752 B 1 HETATM 16 C C5A NAP . . . H 4 44.12 8.013 27.358 1 2 ? C5A NAP 752 B 1 HETATM 17 C C6A NAP . . . H 4 45.063 7.775 28.344 1 2 ? C6A NAP 752 B 1 HETATM 18 N N6A NAP . . . H 4 44.758 7.479 29.591 1 5.44 ? N6A NAP 752 B 1 HETATM 19 N N1A NAP . . . H 4 46.343 7.723 27.961 1 2 ? N1A NAP 752 B 1 HETATM 20 C C2A NAP . . . H 4 46.675 7.904 26.681 1 2 ? C2A NAP 752 B 1 HETATM 21 N N3A NAP . . . H 4 45.79 8.113 25.713 1 2 ? N3A NAP 752 B 1 HETATM 22 C C4A NAP . . . H 4 44.482 8.162 26.04 1 2 ? C4A NAP 752 B 1 HETATM 23 O O3 NAP . . . H 4 40.69 13.654 22.967 1 37.62 ? O3 NAP 752 B 1 HETATM 24 P PN NAP . . . H 4 40.909 15.158 22.559 1 35.96 ? PN NAP 752 B 1 HETATM 25 O O1N NAP . . . H 4 39.572 15.737 22.435 1 34.25 ? O1N NAP 752 B 1 HETATM 26 O O2N NAP . . . H 4 41.901 15.229 21.465 1 36.14 ? O2N NAP 752 B 1 HETATM 27 O O5D NAP . . . H 4 41.536 15.609 23.926 1 45.62 ? O5D NAP 752 B 1 HETATM 28 P P2B NAP . . . H 4 40.098 6.487 23.295 1 18.33 ? P2B NAP 752 B 1 HETATM 29 O O1X NAP . . . H 4 40.108 5.979 24.685 1 9.61 ? O1X NAP 752 B 1 HETATM 30 O O2X NAP . . . H 4 39.905 5.475 22.24 1 18.51 ? O2X NAP 752 B 1 HETATM 31 O O3X NAP . . . H 4 39.356 7.743 23.06 1 21.29 ? O3X NAP 752 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #