data_1AMS # _model_server_result.job_id 6QtnM3vTfjr81-6eUJCNUg _model_server_result.datetime_utc '2024-11-24 17:37:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ams # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":413}' # _entry.id 1AMS # _exptl.entry_id 1AMS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 248.173 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1AMS _cell.length_a 155.1 _cell.length_b 86.6 _cell.length_c 79.3 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AMS _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H13 N2 O5 P' _chem_comp.formula_weight 248.173 _chem_comp.id PMP _chem_comp.mon_nstd_flag . _chem_comp.name "4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "PYRIDOXAMINE-5'-PHOSPHATE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PMP doub 274 n y N1 C6 PMP sing 275 n y C2 C2A PMP sing 276 n n C2 C3 PMP sing 277 n y C2A H2A1 PMP sing 278 n n C2A H2A2 PMP sing 279 n n C2A H2A3 PMP sing 280 n n C3 O3 PMP sing 281 n n C3 C4 PMP doub 282 n y O3 HO3 PMP sing 283 n n C4 C4A PMP sing 284 n n C4 C5 PMP sing 285 n y C4A N4A PMP sing 286 n n C4A H4A1 PMP sing 287 n n C4A H4A2 PMP sing 288 n n N4A HNA1 PMP sing 289 n n N4A HNA2 PMP sing 290 n n C5 C6 PMP doub 291 n y C5 C5A PMP sing 292 n n C6 H6 PMP sing 293 n n C5A O4P PMP sing 294 n n C5A H5A1 PMP sing 295 n n C5A H5A2 PMP sing 296 n n O4P P PMP sing 297 n n P O1P PMP doub 298 n n P O2P PMP sing 299 n n P O3P PMP sing 300 n n O2P HOP2 PMP sing 301 n n O3P HOP3 PMP sing 302 n n # _atom_sites.entry_id 1AMS _atom_sites.fract_transf_matrix[1][1] 0.006447 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011547 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01261 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PMP A 1 413 413 PMP PMP . C 3 GUA A 1 414 414 GUA GUA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PMP . . . B 2 26.521 4.854 -14.487 1 13.23 ? N1 PMP 413 A 1 HETATM 2 C C2 PMP . . . B 2 26.177 5.925 -15.244 1 13.23 ? C2 PMP 413 A 1 HETATM 3 C C2A PMP . . . B 2 26.602 5.987 -16.703 1 13.23 ? C2A PMP 413 A 1 HETATM 4 C C3 PMP . . . B 2 25.311 6.846 -14.761 1 13.23 ? C3 PMP 413 A 1 HETATM 5 O O3 PMP . . . B 2 25.001 7.913 -15.54 1 13.23 ? O3 PMP 413 A 1 HETATM 6 C C4 PMP . . . B 2 24.739 6.668 -13.511 1 13.23 ? C4 PMP 413 A 1 HETATM 7 C C4A PMP . . . B 2 23.881 7.782 -12.885 1 13.23 ? C4A PMP 413 A 1 HETATM 8 N N4A PMP . . . B 2 23.009 8.263 -13.841 1 13.23 ? N4A PMP 413 A 1 HETATM 9 C C5 PMP . . . B 2 25.052 5.545 -12.792 1 13.23 ? C5 PMP 413 A 1 HETATM 10 C C6 PMP . . . B 2 25.959 4.655 -13.266 1 13.23 ? C6 PMP 413 A 1 HETATM 11 C C5A PMP . . . B 2 24.377 5.24 -11.506 1 13.23 ? C5A PMP 413 A 1 HETATM 12 O O4P PMP . . . B 2 22.958 5.012 -11.337 1 13.23 ? O4P PMP 413 A 1 HETATM 13 P P PMP . . . B 2 22.606 4.682 -9.813 1 13.23 ? P PMP 413 A 1 HETATM 14 O O1P PMP . . . B 2 23.795 4.248 -9.08 1 13.23 ? O1P PMP 413 A 1 HETATM 15 O O2P PMP . . . B 2 21.572 3.651 -9.912 1 13.23 ? O2P PMP 413 A 1 HETATM 16 O O3P PMP . . . B 2 22.09 5.986 -9.016 1 13.23 ? O3P PMP 413 A 1 # _model_server_stats.io_time_ms 186 _model_server_stats.parse_time_ms 240 _model_server_stats.create_model_time_ms 61 _model_server_stats.query_time_ms 1158 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 16 #