data_1AMS # _model_server_result.job_id 3rO2Z2JZyLrg1WFM83vBRg _model_server_result.datetime_utc '2024-10-24 04:33:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ams # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":414}' # _entry.id 1AMS # _exptl.entry_id 1AMS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 132.115 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GLUTARIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1AMS _cell.length_a 155.1 _cell.length_b 86.6 _cell.length_c 79.3 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AMS _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H8 O4' _chem_comp.formula_weight 132.115 _chem_comp.id GUA _chem_comp.mon_nstd_flag . _chem_comp.name 'GLUTARIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GUA sing 129 n n C1 O1 GUA doub 130 n n C1 O2 GUA sing 131 n n C2 C3 GUA sing 132 n n C2 H21 GUA sing 133 n n C2 H22 GUA sing 134 n n C3 C4 GUA sing 135 n n C3 H31 GUA sing 136 n n C3 H32 GUA sing 137 n n C4 C5 GUA sing 138 n n C4 H41 GUA sing 139 n n C4 H42 GUA sing 140 n n C5 O3 GUA doub 141 n n C5 O4 GUA sing 142 n n O2 HO2 GUA sing 143 n n O4 HO4 GUA sing 144 n n # _atom_sites.entry_id 1AMS _atom_sites.fract_transf_matrix[1][1] 0.006447 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011547 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01261 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PMP A 1 413 413 PMP PMP . C 3 GUA A 1 414 414 GUA GUA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GUA . . . C 3 23.584 10.065 -9.246 1 49.39 ? C1 GUA 414 A 1 HETATM 2 C C2 GUA . . . C 3 24.461 10.497 -10.378 1 49.39 ? C2 GUA 414 A 1 HETATM 3 C C3 GUA . . . C 3 23.73 11.208 -11.469 1 49.39 ? C3 GUA 414 A 1 HETATM 4 C C4 GUA . . . C 3 24.779 11.976 -12.267 1 49.39 ? C4 GUA 414 A 1 HETATM 5 C C5 GUA . . . C 3 24.207 12.526 -13.531 1 49.39 ? C5 GUA 414 A 1 HETATM 6 O O1 GUA . . . C 3 22.379 10.416 -9.212 1 49.39 ? O1 GUA 414 A 1 HETATM 7 O O2 GUA . . . C 3 24.123 9.37 -8.366 1 49.39 ? O2 GUA 414 A 1 HETATM 8 O O3 GUA . . . C 3 24.503 11.944 -14.575 1 49.39 ? O3 GUA 414 A 1 HETATM 9 O O4 GUA . . . C 3 23.476 13.545 -13.503 1 49.39 ? O4 GUA 414 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 9 #