data_1AMY # _model_server_result.job_id Zn4YvBhl9Ws5wh7cAMgjow _model_server_result.datetime_utc '2024-11-05 00:59:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1amy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 1AMY # _exptl.entry_id 1AMY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1AMY _cell.length_a 135.2 _cell.length_b 135.2 _cell.length_c 79.6 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AMY _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 91 A ASN 91 1_555 B CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc2 A OE1 GLU 108 A GLU 108 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.913 ? metalc ? metalc3 A OE2 GLU 108 A GLU 108 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? metalc ? metalc4 A O THR 111 A THR 111 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc5 A O ASP 113 A ASP 113 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc6 A OD1 ASP 117 A ASP 117 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc7 A OD2 ASP 117 A ASP 117 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc8 A OD1 ASP 127 A ASP 127 1_555 D CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc9 A OD2 ASP 127 A ASP 127 1_555 D CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc10 A OD1 ASP 138 A ASP 138 1_555 B CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc11 A OD2 ASP 138 A ASP 138 1_555 B CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.748 ? metalc ? metalc12 A O ALA 141 A ALA 141 1_555 B CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc13 A OD1 ASP 142 A ASP 142 1_555 D CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? metalc ? metalc14 A OD2 ASP 142 A ASP 142 1_555 D CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.364 ? metalc ? metalc15 A O PHE 143 A PHE 143 1_555 D CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc16 A O GLY 144 A GLY 144 1_555 D CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.263 ? metalc ? metalc17 A O ALA 146 A ALA 146 1_555 D CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc18 A OD2 ASP 148 A ASP 148 1_555 B CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? metalc ? metalc19 A OD1 ASP 148 A ASP 148 1_555 D CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc20 A O GLY 183 A GLY 183 1_555 B CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc21 B CA CA . A CA 500 1_555 E O HOH . A HOH 630 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc22 C CA CA . A CA 501 1_555 E O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc23 C CA CA . A CA 501 1_555 E O HOH . A HOH 656 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1AMY _atom_sites.fract_transf_matrix[1][1] 0.007396 _atom_sites.fract_transf_matrix[1][2] 0.00427 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008541 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012563 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 500 500 CA CA . C 2 CA A 1 501 501 CA CA . D 2 CA A 1 502 502 CA CA . E 3 HOH A 1 600 600 HOH HOH . E 3 HOH A 2 601 601 HOH HOH . E 3 HOH A 3 602 602 HOH HOH . E 3 HOH A 4 603 603 HOH HOH . E 3 HOH A 5 604 604 HOH HOH . E 3 HOH A 6 605 605 HOH HOH . E 3 HOH A 7 606 606 HOH HOH . E 3 HOH A 8 607 607 HOH HOH . E 3 HOH A 9 608 608 HOH HOH . E 3 HOH A 10 609 609 HOH HOH . E 3 HOH A 11 610 610 HOH HOH . E 3 HOH A 12 611 611 HOH HOH . E 3 HOH A 13 612 612 HOH HOH . E 3 HOH A 14 613 613 HOH HOH . E 3 HOH A 15 614 614 HOH HOH . E 3 HOH A 16 615 615 HOH HOH . E 3 HOH A 17 616 616 HOH HOH . E 3 HOH A 18 617 617 HOH HOH . E 3 HOH A 19 618 618 HOH HOH . E 3 HOH A 20 619 619 HOH HOH . E 3 HOH A 21 620 620 HOH HOH . E 3 HOH A 22 621 621 HOH HOH . E 3 HOH A 23 622 622 HOH HOH . E 3 HOH A 24 623 623 HOH HOH . E 3 HOH A 25 624 624 HOH HOH . E 3 HOH A 26 625 625 HOH HOH . E 3 HOH A 27 626 626 HOH HOH . E 3 HOH A 28 627 627 HOH HOH . E 3 HOH A 29 628 628 HOH HOH . E 3 HOH A 30 629 629 HOH HOH . E 3 HOH A 31 630 630 HOH HOH . E 3 HOH A 32 631 631 HOH HOH . E 3 HOH A 33 632 632 HOH HOH . E 3 HOH A 34 633 633 HOH HOH . E 3 HOH A 35 634 634 HOH HOH . E 3 HOH A 36 635 635 HOH HOH . E 3 HOH A 37 636 636 HOH HOH . E 3 HOH A 38 637 637 HOH HOH . E 3 HOH A 39 638 638 HOH HOH . E 3 HOH A 40 639 639 HOH HOH . E 3 HOH A 41 640 640 HOH HOH . E 3 HOH A 42 641 641 HOH HOH . E 3 HOH A 43 642 642 HOH HOH . E 3 HOH A 44 643 643 HOH HOH . E 3 HOH A 45 644 644 HOH HOH . E 3 HOH A 46 645 645 HOH HOH . E 3 HOH A 47 646 646 HOH HOH . E 3 HOH A 48 647 647 HOH HOH . E 3 HOH A 49 648 648 HOH HOH . E 3 HOH A 50 649 649 HOH HOH . E 3 HOH A 51 650 650 HOH HOH . E 3 HOH A 52 651 651 HOH HOH . E 3 HOH A 53 652 652 HOH HOH . E 3 HOH A 54 653 653 HOH HOH . E 3 HOH A 55 654 654 HOH HOH . E 3 HOH A 56 655 655 HOH HOH . E 3 HOH A 57 656 656 HOH HOH . E 3 HOH A 58 657 657 HOH HOH . E 3 HOH A 59 658 658 HOH HOH . E 3 HOH A 60 659 659 HOH HOH . E 3 HOH A 61 660 660 HOH HOH . E 3 HOH A 62 661 661 HOH HOH . E 3 HOH A 63 662 662 HOH HOH . E 3 HOH A 64 663 663 HOH HOH . E 3 HOH A 65 664 664 HOH HOH . E 3 HOH A 66 665 665 HOH HOH . E 3 HOH A 67 666 666 HOH HOH . E 3 HOH A 68 667 667 HOH HOH . E 3 HOH A 69 668 668 HOH HOH . E 3 HOH A 70 669 669 HOH HOH . E 3 HOH A 71 670 670 HOH HOH . E 3 HOH A 72 671 671 HOH HOH . E 3 HOH A 73 672 672 HOH HOH . E 3 HOH A 74 673 673 HOH HOH . E 3 HOH A 75 674 674 HOH HOH . E 3 HOH A 76 675 675 HOH HOH . E 3 HOH A 77 676 676 HOH HOH . E 3 HOH A 78 677 677 HOH HOH . E 3 HOH A 79 678 678 HOH HOH . E 3 HOH A 80 679 679 HOH HOH . E 3 HOH A 81 680 680 HOH HOH . E 3 HOH A 82 681 681 HOH HOH . E 3 HOH A 83 682 682 HOH HOH . E 3 HOH A 84 683 683 HOH HOH . E 3 HOH A 85 684 684 HOH HOH . E 3 HOH A 86 685 685 HOH HOH . E 3 HOH A 87 686 686 HOH HOH . E 3 HOH A 88 687 687 HOH HOH . E 3 HOH A 89 688 688 HOH HOH . E 3 HOH A 90 689 689 HOH HOH . E 3 HOH A 91 690 690 HOH HOH . E 3 HOH A 92 691 691 HOH HOH . E 3 HOH A 93 692 692 HOH HOH . E 3 HOH A 94 693 693 HOH HOH . E 3 HOH A 95 694 694 HOH HOH . E 3 HOH A 96 695 695 HOH HOH . E 3 HOH A 97 696 696 HOH HOH . E 3 HOH A 98 697 697 HOH HOH . E 3 HOH A 99 698 698 HOH HOH . E 3 HOH A 100 699 699 HOH HOH . E 3 HOH A 101 700 700 HOH HOH . E 3 HOH A 102 701 701 HOH HOH . E 3 HOH A 103 702 702 HOH HOH . E 3 HOH A 104 703 703 HOH HOH . E 3 HOH A 105 704 704 HOH HOH . E 3 HOH A 106 705 705 HOH HOH . E 3 HOH A 107 706 706 HOH HOH . E 3 HOH A 108 707 707 HOH HOH . E 3 HOH A 109 708 708 HOH HOH . E 3 HOH A 110 709 709 HOH HOH . E 3 HOH A 111 710 710 HOH HOH . E 3 HOH A 112 711 711 HOH HOH . E 3 HOH A 113 712 712 HOH HOH . E 3 HOH A 114 713 713 HOH HOH . E 3 HOH A 115 714 714 HOH HOH . E 3 HOH A 116 715 715 HOH HOH . E 3 HOH A 117 716 716 HOH HOH . E 3 HOH A 118 717 717 HOH HOH . E 3 HOH A 119 718 718 HOH HOH . E 3 HOH A 120 719 719 HOH HOH . E 3 HOH A 121 720 720 HOH HOH . E 3 HOH A 122 721 721 HOH HOH . E 3 HOH A 123 722 722 HOH HOH . E 3 HOH A 124 723 723 HOH HOH . E 3 HOH A 125 724 724 HOH HOH . E 3 HOH A 126 725 725 HOH HOH . E 3 HOH A 127 726 726 HOH HOH . E 3 HOH A 128 727 727 HOH HOH . E 3 HOH A 129 728 728 HOH HOH . E 3 HOH A 130 730 730 HOH HOH . E 3 HOH A 131 731 731 HOH HOH . E 3 HOH A 132 732 732 HOH HOH . E 3 HOH A 133 733 733 HOH HOH . E 3 HOH A 134 734 734 HOH HOH . E 3 HOH A 135 735 735 HOH HOH . E 3 HOH A 136 736 736 HOH HOH . E 3 HOH A 137 737 737 HOH HOH . E 3 HOH A 138 738 738 HOH HOH . E 3 HOH A 139 739 739 HOH HOH . E 3 HOH A 140 740 740 HOH HOH . E 3 HOH A 141 741 741 HOH HOH . E 3 HOH A 142 742 742 HOH HOH . E 3 HOH A 143 743 743 HOH HOH . E 3 HOH A 144 744 744 HOH HOH . E 3 HOH A 145 745 745 HOH HOH . E 3 HOH A 146 746 746 HOH HOH . E 3 HOH A 147 747 747 HOH HOH . E 3 HOH A 148 748 748 HOH HOH . E 3 HOH A 149 749 749 HOH HOH . E 3 HOH A 150 750 750 HOH HOH . E 3 HOH A 151 751 751 HOH HOH . E 3 HOH A 152 752 752 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x -4.908 _atom_site.Cartn_y 73.975 _atom_site.Cartn_z 40.917 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 14.69 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 502 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 223 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #