data_1AMZ # _model_server_result.job_id '_NIc75GHsnzq3YxSI4ULJQ' _model_server_result.datetime_utc '2024-11-06 03:04:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1amz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":702}' # _entry.id 1AMZ # _exptl.entry_id 1AMZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 134.087 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-MALATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 78.93 _cell.angle_gamma 90 _cell.entry_id 1AMZ _cell.length_a 104.127 _cell.length_b 78.5 _cell.length_c 58.42 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AMZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 364 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 366 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id O8A _struct_conn.ptnr2_label_comp_id NMX _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NMX _struct_conn.ptnr2_auth_seq_id 700 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.826 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C4 H6 O5' _chem_comp.formula_weight 134.087 _chem_comp.id MLT _chem_comp.mon_nstd_flag . _chem_comp.name D-MALATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(2R)-2-HYDROXYBUTANEDIOIC ACID;2-HYDROXY-SUCCINIC ACID' # _atom_sites.entry_id 1AMZ _atom_sites.fract_transf_matrix[1][1] 0.009604 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] -0.001879 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012739 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017442 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MLT A 1 702 702 MLT MLT . C 3 NMX A 1 700 700 NMX NMX . D 4 HOH A 1 501 501 HOH HOH . D 4 HOH A 2 502 502 HOH HOH . D 4 HOH A 3 503 503 HOH HOH . D 4 HOH A 4 504 504 HOH HOH . D 4 HOH A 5 506 506 HOH HOH . D 4 HOH A 6 507 507 HOH HOH . D 4 HOH A 7 508 508 HOH HOH . D 4 HOH A 8 509 509 HOH HOH . D 4 HOH A 9 510 510 HOH HOH . D 4 HOH A 10 511 511 HOH HOH . D 4 HOH A 11 512 512 HOH HOH . D 4 HOH A 12 513 513 HOH HOH . D 4 HOH A 13 514 514 HOH HOH . D 4 HOH A 14 515 515 HOH HOH . D 4 HOH A 15 516 516 HOH HOH . D 4 HOH A 16 517 517 HOH HOH . D 4 HOH A 17 518 518 HOH HOH . D 4 HOH A 18 519 519 HOH HOH . D 4 HOH A 19 520 520 HOH HOH . D 4 HOH A 20 521 521 HOH HOH . D 4 HOH A 21 522 522 HOH HOH . D 4 HOH A 22 523 523 HOH HOH . D 4 HOH A 23 524 524 HOH HOH . D 4 HOH A 24 526 526 HOH HOH . D 4 HOH A 25 527 527 HOH HOH . D 4 HOH A 26 528 528 HOH HOH . D 4 HOH A 27 529 529 HOH HOH . D 4 HOH A 28 530 530 HOH HOH . D 4 HOH A 29 532 532 HOH HOH . D 4 HOH A 30 533 533 HOH HOH . D 4 HOH A 31 534 534 HOH HOH . D 4 HOH A 32 535 535 HOH HOH . D 4 HOH A 33 536 536 HOH HOH . D 4 HOH A 34 537 537 HOH HOH . D 4 HOH A 35 538 538 HOH HOH . D 4 HOH A 36 539 539 HOH HOH . D 4 HOH A 37 540 540 HOH HOH . D 4 HOH A 38 541 541 HOH HOH . D 4 HOH A 39 542 542 HOH HOH . D 4 HOH A 40 543 543 HOH HOH . D 4 HOH A 41 544 544 HOH HOH . D 4 HOH A 42 545 545 HOH HOH . D 4 HOH A 43 546 546 HOH HOH . D 4 HOH A 44 547 547 HOH HOH . D 4 HOH A 45 548 548 HOH HOH . D 4 HOH A 46 549 549 HOH HOH . D 4 HOH A 47 550 550 HOH HOH . D 4 HOH A 48 555 555 HOH HOH . D 4 HOH A 49 559 559 HOH HOH . D 4 HOH A 50 561 561 HOH HOH . D 4 HOH A 51 566 566 HOH HOH . D 4 HOH A 52 568 568 HOH HOH . D 4 HOH A 53 570 570 HOH HOH . D 4 HOH A 54 574 574 HOH HOH . D 4 HOH A 55 575 575 HOH HOH . D 4 HOH A 56 578 578 HOH HOH . D 4 HOH A 57 580 580 HOH HOH . D 4 HOH A 58 581 581 HOH HOH . D 4 HOH A 59 582 582 HOH HOH . D 4 HOH A 60 583 583 HOH HOH . D 4 HOH A 61 584 584 HOH HOH . D 4 HOH A 62 585 585 HOH HOH . D 4 HOH A 63 586 586 HOH HOH . D 4 HOH A 64 587 587 HOH HOH . D 4 HOH A 65 588 588 HOH HOH . D 4 HOH A 66 589 589 HOH HOH . D 4 HOH A 67 590 590 HOH HOH . D 4 HOH A 68 592 592 HOH HOH . D 4 HOH A 69 593 593 HOH HOH . D 4 HOH A 70 595 595 HOH HOH . D 4 HOH A 71 596 596 HOH HOH . D 4 HOH A 72 597 597 HOH HOH . D 4 HOH A 73 598 598 HOH HOH . D 4 HOH A 74 599 599 HOH HOH . D 4 HOH A 75 601 601 HOH HOH . D 4 HOH A 76 602 602 HOH HOH . D 4 HOH A 77 603 603 HOH HOH . D 4 HOH A 78 604 604 HOH HOH . D 4 HOH A 79 605 605 HOH HOH . D 4 HOH A 80 606 606 HOH HOH . D 4 HOH A 81 610 610 HOH HOH . D 4 HOH A 82 611 611 HOH HOH . D 4 HOH A 83 612 612 HOH HOH . D 4 HOH A 84 613 613 HOH HOH . D 4 HOH A 85 614 614 HOH HOH . D 4 HOH A 86 615 615 HOH HOH . D 4 HOH A 87 616 616 HOH HOH . D 4 HOH A 88 617 617 HOH HOH . D 4 HOH A 89 618 618 HOH HOH . D 4 HOH A 90 619 619 HOH HOH . D 4 HOH A 91 620 620 HOH HOH . D 4 HOH A 92 621 621 HOH HOH . D 4 HOH A 93 622 622 HOH HOH . D 4 HOH A 94 623 623 HOH HOH . D 4 HOH A 95 624 624 HOH HOH . D 4 HOH A 96 625 625 HOH HOH . D 4 HOH A 97 626 626 HOH HOH . D 4 HOH A 98 627 627 HOH HOH . D 4 HOH A 99 628 628 HOH HOH . D 4 HOH A 100 629 629 HOH HOH . D 4 HOH A 101 630 630 HOH HOH . D 4 HOH A 102 631 631 HOH HOH . D 4 HOH A 103 632 632 HOH HOH . D 4 HOH A 104 633 633 HOH HOH . D 4 HOH A 105 634 634 HOH HOH . D 4 HOH A 106 635 635 HOH HOH . D 4 HOH A 107 636 636 HOH HOH . D 4 HOH A 108 637 637 HOH HOH . D 4 HOH A 109 638 638 HOH HOH . D 4 HOH A 110 639 639 HOH HOH . D 4 HOH A 111 640 640 HOH HOH . D 4 HOH A 112 641 641 HOH HOH . D 4 HOH A 113 642 642 HOH HOH . D 4 HOH A 114 643 643 HOH HOH . D 4 HOH A 115 644 644 HOH HOH . D 4 HOH A 116 645 645 HOH HOH . D 4 HOH A 117 646 646 HOH HOH . D 4 HOH A 118 647 647 HOH HOH . D 4 HOH A 119 648 648 HOH HOH . D 4 HOH A 120 649 649 HOH HOH . D 4 HOH A 121 650 650 HOH HOH . D 4 HOH A 122 651 651 HOH HOH . D 4 HOH A 123 652 652 HOH HOH . D 4 HOH A 124 653 653 HOH HOH . D 4 HOH A 125 654 654 HOH HOH . D 4 HOH A 126 655 655 HOH HOH . D 4 HOH A 127 656 656 HOH HOH . D 4 HOH A 128 657 657 HOH HOH . D 4 HOH A 129 658 658 HOH HOH . D 4 HOH A 130 659 659 HOH HOH . D 4 HOH A 131 660 660 HOH HOH . D 4 HOH A 132 661 661 HOH HOH . D 4 HOH A 133 662 662 HOH HOH . D 4 HOH A 134 663 663 HOH HOH . D 4 HOH A 135 664 664 HOH HOH . D 4 HOH A 136 665 665 HOH HOH . D 4 HOH A 137 666 666 HOH HOH . D 4 HOH A 138 667 667 HOH HOH . D 4 HOH A 139 668 668 HOH HOH . D 4 HOH A 140 669 669 HOH HOH . D 4 HOH A 141 670 670 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLT . . . B 2 14.432 -5.674 -1.95 1 11.57 ? C1 MLT 702 A 1 HETATM 2 O O1 MLT . . . B 2 13.237 -5.424 -2.115 1 9.01 ? O1 MLT 702 A 1 HETATM 3 O O2 MLT . . . B 2 15.308 -5.43 -2.798 1 6.32 ? O2 MLT 702 A 1 HETATM 4 C C2 MLT . . . B 2 14.937 -6.163 -0.619 1 6.55 ? C2 MLT 702 A 1 HETATM 5 O O3 MLT . . . B 2 16.152 -6.883 -0.764 1 5.9 ? O3 MLT 702 A 1 HETATM 6 C C3 MLT . . . B 2 13.803 -6.916 0.072 1 4.61 ? C3 MLT 702 A 1 HETATM 7 C C4 MLT . . . B 2 13.363 -8.258 -0.471 1 8.96 ? C4 MLT 702 A 1 HETATM 8 O O4 MLT . . . B 2 13.848 -8.696 -1.549 1 8.55 ? O4 MLT 702 A 1 HETATM 9 O O5 MLT . . . B 2 12.584 -8.908 0.281 1 5.96 ? O5 MLT 702 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #