data_1ANB # _model_server_result.job_id VF1X6BFpzNGQ9o_sq8lZFA _model_server_result.datetime_utc '2025-03-06 02:17:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1anb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":290}' # _entry.id 1ANB # _exptl.entry_id 1ANB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 120.152 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BENZAMIDINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ANB _cell.length_a 124.38 _cell.length_b 124.38 _cell.length_c 124.38 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ANB _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 0 0 124.38 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc1 A OE1 GLU 52 A GLU 70 1_555 B CA CA . A CA 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc2 A O ASN 54 A ASN 72 1_555 B CA CA . A CA 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc3 A O VAL 57 A VAL 75 1_555 B CA CA . A CA 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc4 A OE1 GLU 59 A GLU 77 1_555 B CA CA . A CA 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? metalc ? metalc5 A OE2 GLU 62 A GLU 80 1_555 B CA CA . A CA 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc6 B CA CA . A CA 289 1_555 E O HOH . A HOH 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? # _chem_comp.formula 'C7 H8 N2' _chem_comp.formula_weight 120.152 _chem_comp.id BEN _chem_comp.mon_nstd_flag . _chem_comp.name BENZAMIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BEN doub 70 n y C1 C6 BEN sing 71 n y C1 C BEN sing 72 n n C2 C3 BEN sing 73 n y C2 H2 BEN sing 74 n n C3 C4 BEN doub 75 n y C3 H3 BEN sing 76 n n C4 C5 BEN sing 77 n y C4 H4 BEN sing 78 n n C5 C6 BEN doub 79 n y C5 H5 BEN sing 80 n n C6 H6 BEN sing 81 n n C N1 BEN doub 82 e n C N2 BEN sing 83 n n N1 HN1 BEN sing 84 n n N2 HN21 BEN sing 85 n n N2 HN22 BEN sing 86 n n # _atom_sites.entry_id 1ANB _atom_sites.fract_transf_matrix[1][1] 0.00804 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00804 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00804 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 289 289 CA CA . C 3 BEN A 1 290 224 BEN BEN . D 3 BEN A 1 370 370 BEN BEN . E 4 HOH A 1 371 225 HOH HOH . E 4 HOH A 2 372 226 HOH HOH . E 4 HOH A 3 373 227 HOH HOH . E 4 HOH A 4 374 228 HOH HOH . E 4 HOH A 5 375 229 HOH HOH . E 4 HOH A 6 376 230 HOH HOH . E 4 HOH A 7 377 231 HOH HOH . E 4 HOH A 8 378 232 HOH HOH . E 4 HOH A 9 379 233 HOH HOH . E 4 HOH A 10 380 234 HOH HOH . E 4 HOH A 11 381 235 HOH HOH . E 4 HOH A 12 382 236 HOH HOH . E 4 HOH A 13 383 237 HOH HOH . E 4 HOH A 14 384 238 HOH HOH . E 4 HOH A 15 385 239 HOH HOH . E 4 HOH A 16 386 240 HOH HOH . E 4 HOH A 17 387 241 HOH HOH . E 4 HOH A 18 388 242 HOH HOH . E 4 HOH A 19 389 243 HOH HOH . E 4 HOH A 20 390 244 HOH HOH . E 4 HOH A 21 391 245 HOH HOH . E 4 HOH A 22 392 246 HOH HOH . E 4 HOH A 23 393 247 HOH HOH . E 4 HOH A 24 394 248 HOH HOH . E 4 HOH A 25 395 249 HOH HOH . E 4 HOH A 26 396 250 HOH HOH . E 4 HOH A 27 397 251 HOH HOH . E 4 HOH A 28 398 252 HOH HOH . E 4 HOH A 29 399 253 HOH HOH . E 4 HOH A 30 400 254 HOH HOH . E 4 HOH A 31 401 255 HOH HOH . E 4 HOH A 32 402 256 HOH HOH . E 4 HOH A 33 403 257 HOH HOH . E 4 HOH A 34 404 258 HOH HOH . E 4 HOH A 35 405 259 HOH HOH . E 4 HOH A 36 406 260 HOH HOH . E 4 HOH A 37 407 261 HOH HOH . E 4 HOH A 38 408 262 HOH HOH . E 4 HOH A 39 409 263 HOH HOH . E 4 HOH A 40 410 264 HOH HOH . E 4 HOH A 41 411 265 HOH HOH . E 4 HOH A 42 412 266 HOH HOH . E 4 HOH A 43 413 267 HOH HOH . E 4 HOH A 44 414 268 HOH HOH . E 4 HOH A 45 415 269 HOH HOH . E 4 HOH A 46 416 270 HOH HOH . E 4 HOH A 47 417 271 HOH HOH . E 4 HOH A 48 418 272 HOH HOH . E 4 HOH A 49 419 273 HOH HOH . E 4 HOH A 50 420 274 HOH HOH . E 4 HOH A 51 421 275 HOH HOH . E 4 HOH A 52 422 276 HOH HOH . E 4 HOH A 53 423 277 HOH HOH . E 4 HOH A 54 424 278 HOH HOH . E 4 HOH A 55 425 279 HOH HOH . E 4 HOH A 56 426 280 HOH HOH . E 4 HOH A 57 427 281 HOH HOH . E 4 HOH A 58 428 282 HOH HOH . E 4 HOH A 59 429 283 HOH HOH . E 4 HOH A 60 430 284 HOH HOH . E 4 HOH A 61 431 285 HOH HOH . E 4 HOH A 62 432 286 HOH HOH . E 4 HOH A 63 433 287 HOH HOH . E 4 HOH A 64 434 288 HOH HOH . E 4 HOH A 65 435 290 HOH HOH . E 4 HOH A 66 436 291 HOH HOH . E 4 HOH A 67 437 292 HOH HOH . E 4 HOH A 68 438 293 HOH HOH . E 4 HOH A 69 439 294 HOH HOH . E 4 HOH A 70 440 295 HOH HOH . E 4 HOH A 71 441 296 HOH HOH . E 4 HOH A 72 442 297 HOH HOH . E 4 HOH A 73 443 298 HOH HOH . E 4 HOH A 74 444 299 HOH HOH . E 4 HOH A 75 445 300 HOH HOH . E 4 HOH A 76 446 301 HOH HOH . E 4 HOH A 77 447 302 HOH HOH . E 4 HOH A 78 448 303 HOH HOH . E 4 HOH A 79 449 304 HOH HOH . E 4 HOH A 80 450 305 HOH HOH . E 4 HOH A 81 451 306 HOH HOH . E 4 HOH A 82 452 307 HOH HOH . E 4 HOH A 83 453 308 HOH HOH . E 4 HOH A 84 454 309 HOH HOH . E 4 HOH A 85 455 310 HOH HOH . E 4 HOH A 86 456 311 HOH HOH . E 4 HOH A 87 457 312 HOH HOH . E 4 HOH A 88 458 313 HOH HOH . E 4 HOH A 89 459 314 HOH HOH . E 4 HOH A 90 460 315 HOH HOH . E 4 HOH A 91 461 316 HOH HOH . E 4 HOH A 92 462 317 HOH HOH . E 4 HOH A 93 463 318 HOH HOH . E 4 HOH A 94 464 319 HOH HOH . E 4 HOH A 95 465 320 HOH HOH . E 4 HOH A 96 466 321 HOH HOH . E 4 HOH A 97 467 322 HOH HOH . E 4 HOH A 98 468 323 HOH HOH . E 4 HOH A 99 469 324 HOH HOH . E 4 HOH A 100 470 325 HOH HOH . E 4 HOH A 101 471 326 HOH HOH . E 4 HOH A 102 472 327 HOH HOH . E 4 HOH A 103 473 328 HOH HOH . E 4 HOH A 104 474 329 HOH HOH . E 4 HOH A 105 475 330 HOH HOH . E 4 HOH A 106 476 331 HOH HOH . E 4 HOH A 107 477 332 HOH HOH . E 4 HOH A 108 478 333 HOH HOH . E 4 HOH A 109 479 334 HOH HOH . E 4 HOH A 110 480 335 HOH HOH . E 4 HOH A 111 481 336 HOH HOH . E 4 HOH A 112 482 337 HOH HOH . E 4 HOH A 113 483 338 HOH HOH . E 4 HOH A 114 484 339 HOH HOH . E 4 HOH A 115 485 340 HOH HOH . E 4 HOH A 116 486 341 HOH HOH . E 4 HOH A 117 487 342 HOH HOH . E 4 HOH A 118 488 343 HOH HOH . E 4 HOH A 119 489 344 HOH HOH . E 4 HOH A 120 490 345 HOH HOH . E 4 HOH A 121 491 346 HOH HOH . E 4 HOH A 122 492 347 HOH HOH . E 4 HOH A 123 493 348 HOH HOH . E 4 HOH A 124 494 349 HOH HOH . E 4 HOH A 125 495 350 HOH HOH . E 4 HOH A 126 496 351 HOH HOH . E 4 HOH A 127 497 352 HOH HOH . E 4 HOH A 128 498 353 HOH HOH . E 4 HOH A 129 499 354 HOH HOH . E 4 HOH A 130 500 355 HOH HOH . E 4 HOH A 131 501 356 HOH HOH . E 4 HOH A 132 502 357 HOH HOH . E 4 HOH A 133 503 358 HOH HOH . E 4 HOH A 134 504 359 HOH HOH . E 4 HOH A 135 505 360 HOH HOH . E 4 HOH A 136 506 361 HOH HOH . E 4 HOH A 137 507 362 HOH HOH . E 4 HOH A 138 508 363 HOH HOH . E 4 HOH A 139 509 364 HOH HOH . E 4 HOH A 140 510 365 HOH HOH . E 4 HOH A 141 511 366 HOH HOH . E 4 HOH A 142 512 367 HOH HOH . E 4 HOH A 143 513 368 HOH HOH . E 4 HOH A 144 514 369 HOH HOH . E 4 HOH A 145 515 372 HOH HOH . E 4 HOH A 146 516 373 HOH HOH . E 4 HOH A 147 517 374 HOH HOH . E 4 HOH A 148 518 375 HOH HOH . E 4 HOH A 149 519 376 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BEN . . . C 3 7.661 50.679 55.393 1 2 ? C1 BEN 290 A 1 HETATM 2 C C2 BEN . . . C 3 7.803 50.599 56.774 1 2 ? C2 BEN 290 A 1 HETATM 3 C C3 BEN . . . C 3 7.837 49.34 57.426 1 2 ? C3 BEN 290 A 1 HETATM 4 C C4 BEN . . . C 3 7.747 48.159 56.645 1 2 ? C4 BEN 290 A 1 HETATM 5 C C5 BEN . . . C 3 7.623 48.251 55.232 1 2 ? C5 BEN 290 A 1 HETATM 6 C C6 BEN . . . C 3 7.565 49.517 54.624 1 2 ? C6 BEN 290 A 1 HETATM 7 C C BEN . . . C 3 7.402 51.913 54.802 1 2 ? C BEN 290 A 1 HETATM 8 N N1 BEN . . . C 3 7.255 52.985 55.569 1 2 ? N1 BEN 290 A 1 HETATM 9 N N2 BEN . . . C 3 7.726 52.039 53.527 1 2 ? N2 BEN 290 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 430 _model_server_stats.encode_time_ms 21 _model_server_stats.element_count 9 #