data_1AOB # _model_server_result.job_id IS10uyHyMSe2KOdBdlR_sw _model_server_result.datetime_utc '2024-11-05 16:25:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1aob # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 1AOB # _exptl.entry_id 1AOB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 212.203 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2'-5'DIDEOXYURIDINE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1AOB _cell.length_a 133.02 _cell.length_b 133.02 _cell.length_c 133.02 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AOB _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 16_555 x,-y,-z+1/2 1 0 0 0 -1 0 0 0 -1 0 0 66.51 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id N _struct_conn.ptnr1_label_comp_id MET _struct_conn.ptnr1_label_seq_id 1 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id MET _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id C _struct_conn.ptnr2_label_comp_id FMT _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id FMT _struct_conn.ptnr2_auth_seq_id 302 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.329 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C9 H12 N2 O4' _chem_comp.formula_weight 212.203 _chem_comp.id DDU _chem_comp.mon_nstd_flag . _chem_comp.name "2'-5'DIDEOXYURIDINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1AOB _atom_sites.fract_transf_matrix[1][1] 0.007518 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007518 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007518 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 300 300 PO4 PO4 . C 3 DDU A 1 301 301 DDU DDU . D 4 FMT A 1 302 0 FMT CBX . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 DDU . . . C 3 -28.376 -8.88 20.116 1 73.96 ? N1 DDU 301 A 1 HETATM 2 C C2 DDU . . . C 3 -27.442 -7.848 20.148 1 68.44 ? C2 DDU 301 A 1 HETATM 3 N N3 DDU . . . C 3 -27.926 -6.599 19.855 1 73.8 ? N3 DDU 301 A 1 HETATM 4 C C4 DDU . . . C 3 -29.241 -6.289 19.524 1 77.21 ? C4 DDU 301 A 1 HETATM 5 C C5 DDU . . . C 3 -30.137 -7.435 19.502 1 76.55 ? C5 DDU 301 A 1 HETATM 6 C C6 DDU . . . C 3 -29.65 -8.709 19.803 1 74.19 ? C6 DDU 301 A 1 HETATM 7 O O2 DDU . . . C 3 -26.248 -7.998 20.373 1 60.54 ? O2 DDU 301 A 1 HETATM 8 O O4 DDU . . . C 3 -29.593 -5.119 19.353 1 72.64 ? O4 DDU 301 A 1 HETATM 9 C C1' DDU . . . C 3 -27.955 -10.24 20.507 1 74.87 ? C1' DDU 301 A 1 HETATM 10 C C2' DDU . . . C 3 -28.193 -10.544 21.978 1 74.91 ? C2' DDU 301 A 1 HETATM 11 C C3' DDU . . . C 3 -27.955 -12.036 22.054 1 75.08 ? C3' DDU 301 A 1 HETATM 12 C C4' DDU . . . C 3 -28.803 -12.439 20.84 1 71.38 ? C4' DDU 301 A 1 HETATM 13 O O3' DDU . . . C 3 -26.572 -12.287 21.788 1 69.24 ? O3' DDU 301 A 1 HETATM 14 O O4' DDU . . . C 3 -28.531 -11.406 19.82 1 72.42 ? O4' DDU 301 A 1 HETATM 15 C C5' DDU . . . C 3 -30.298 -12.447 21.216 1 74.62 ? C5' DDU 301 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 15 #