data_1APM # _model_server_result.job_id SLsGMcOucyxo1oT9MPICCw _model_server_result.datetime_utc '2024-10-12 19:22:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1apm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":354}' # _entry.id 1APM # _exptl.entry_id 1APM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 114.229 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-OCTANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1APM _cell.length_a 73.84 _cell.length_b 75.76 _cell.length_c 81.01 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1APM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SEP 10 E SEP 10 1_555 A N GLU 11 E GLU 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale2 A C TRP 196 E TRP 196 1_555 A N TPO 197 E TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.307 ? covale ? covale3 A C TPO 197 E TPO 197 1_555 A N LEU 198 E LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale4 A C VAL 337 E VAL 337 1_555 A N SEP 338 E SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 A C SEP 338 E SEP 338 1_555 A N ILE 339 E ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? # _chem_comp.formula 'C8 H18' _chem_comp.formula_weight 114.229 _chem_comp.id OCT _chem_comp.mon_nstd_flag . _chem_comp.name N-OCTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 OCT sing 237 n n C1 H11 OCT sing 238 n n C1 H12 OCT sing 239 n n C1 H13 OCT sing 240 n n C2 C3 OCT sing 241 n n C2 H21 OCT sing 242 n n C2 H22 OCT sing 243 n n C3 C4 OCT sing 244 n n C3 H31 OCT sing 245 n n C3 H32 OCT sing 246 n n C4 C5 OCT sing 247 n n C4 H41 OCT sing 248 n n C4 H42 OCT sing 249 n n C5 C6 OCT sing 250 n n C5 H51 OCT sing 251 n n C5 H52 OCT sing 252 n n C6 C7 OCT sing 253 n n C6 H61 OCT sing 254 n n C6 H62 OCT sing 255 n n C7 C8 OCT sing 256 n n C7 H71 OCT sing 257 n n C7 H72 OCT sing 258 n n C8 H81 OCT sing 259 n n C8 H82 OCT sing 260 n n C8 H83 OCT sing 261 n n # _atom_sites.entry_id 1APM _atom_sites.fract_transf_matrix[1][1] 0.013543 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0132 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012344 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 OCT E 1 354 354 OCT OCT . D 4 HOH E 1 401 401 HOH HOH . D 4 HOH E 2 402 402 HOH HOH . D 4 HOH E 3 404 404 HOH HOH . D 4 HOH E 4 405 405 HOH HOH . D 4 HOH E 5 406 406 HOH HOH . D 4 HOH E 6 407 407 HOH HOH . D 4 HOH E 7 408 408 HOH HOH . D 4 HOH E 8 409 409 HOH HOH . D 4 HOH E 9 410 410 HOH HOH . D 4 HOH E 10 411 411 HOH HOH . D 4 HOH E 11 412 412 HOH HOH . D 4 HOH E 12 413 413 HOH HOH . D 4 HOH E 13 414 414 HOH HOH . D 4 HOH E 14 415 415 HOH HOH . D 4 HOH E 15 420 420 HOH HOH . D 4 HOH E 16 421 421 HOH HOH . D 4 HOH E 17 422 422 HOH HOH . D 4 HOH E 18 423 423 HOH HOH . D 4 HOH E 19 425 425 HOH HOH . D 4 HOH E 20 426 426 HOH HOH . D 4 HOH E 21 427 427 HOH HOH . D 4 HOH E 22 428 428 HOH HOH . D 4 HOH E 23 429 429 HOH HOH . D 4 HOH E 24 430 430 HOH HOH . D 4 HOH E 25 431 431 HOH HOH . D 4 HOH E 26 432 432 HOH HOH . D 4 HOH E 27 433 433 HOH HOH . D 4 HOH E 28 434 434 HOH HOH . D 4 HOH E 29 435 435 HOH HOH . D 4 HOH E 30 436 436 HOH HOH . D 4 HOH E 31 437 437 HOH HOH . D 4 HOH E 32 438 438 HOH HOH . D 4 HOH E 33 439 439 HOH HOH . D 4 HOH E 34 440 440 HOH HOH . D 4 HOH E 35 441 441 HOH HOH . D 4 HOH E 36 442 442 HOH HOH . D 4 HOH E 37 443 443 HOH HOH . D 4 HOH E 38 444 444 HOH HOH . D 4 HOH E 39 445 445 HOH HOH . D 4 HOH E 40 446 446 HOH HOH . D 4 HOH E 41 447 447 HOH HOH . D 4 HOH E 42 448 448 HOH HOH . D 4 HOH E 43 449 449 HOH HOH . D 4 HOH E 44 450 450 HOH HOH . D 4 HOH E 45 451 451 HOH HOH . D 4 HOH E 46 452 452 HOH HOH . D 4 HOH E 47 453 453 HOH HOH . D 4 HOH E 48 454 454 HOH HOH . D 4 HOH E 49 455 455 HOH HOH . D 4 HOH E 50 456 456 HOH HOH . D 4 HOH E 51 457 457 HOH HOH . D 4 HOH E 52 458 458 HOH HOH . D 4 HOH E 53 459 459 HOH HOH . D 4 HOH E 54 460 460 HOH HOH . D 4 HOH E 55 461 461 HOH HOH . D 4 HOH E 56 462 462 HOH HOH . D 4 HOH E 57 463 463 HOH HOH . D 4 HOH E 58 464 464 HOH HOH . D 4 HOH E 59 465 465 HOH HOH . D 4 HOH E 60 466 466 HOH HOH . D 4 HOH E 61 467 467 HOH HOH . D 4 HOH E 62 468 468 HOH HOH . D 4 HOH E 63 469 469 HOH HOH . D 4 HOH E 64 470 470 HOH HOH . D 4 HOH E 65 471 471 HOH HOH . D 4 HOH E 66 472 472 HOH HOH . D 4 HOH E 67 473 473 HOH HOH . D 4 HOH E 68 474 474 HOH HOH . D 4 HOH E 69 475 475 HOH HOH . D 4 HOH E 70 476 476 HOH HOH . D 4 HOH E 71 477 477 HOH HOH . D 4 HOH E 72 478 478 HOH HOH . D 4 HOH E 73 479 479 HOH HOH . D 4 HOH E 74 480 480 HOH HOH . D 4 HOH E 75 481 481 HOH HOH . D 4 HOH E 76 482 482 HOH HOH . D 4 HOH E 77 483 483 HOH HOH . D 4 HOH E 78 484 484 HOH HOH . D 4 HOH E 79 485 485 HOH HOH . D 4 HOH E 80 486 486 HOH HOH . D 4 HOH E 81 487 487 HOH HOH . D 4 HOH E 82 489 489 HOH HOH . D 4 HOH E 83 490 490 HOH HOH . D 4 HOH E 84 491 491 HOH HOH . D 4 HOH E 85 492 492 HOH HOH . D 4 HOH E 86 493 493 HOH HOH . D 4 HOH E 87 494 494 HOH HOH . D 4 HOH E 88 495 495 HOH HOH . D 4 HOH E 89 496 496 HOH HOH . D 4 HOH E 90 498 498 HOH HOH . D 4 HOH E 91 499 499 HOH HOH . D 4 HOH E 92 500 500 HOH HOH . D 4 HOH E 93 501 501 HOH HOH . D 4 HOH E 94 502 502 HOH HOH . D 4 HOH E 95 503 503 HOH HOH . D 4 HOH E 96 504 504 HOH HOH . D 4 HOH E 97 505 505 HOH HOH . D 4 HOH E 98 506 506 HOH HOH . D 4 HOH E 99 507 507 HOH HOH . D 4 HOH E 100 508 508 HOH HOH . D 4 HOH E 101 509 509 HOH HOH . D 4 HOH E 102 510 510 HOH HOH . D 4 HOH E 103 511 511 HOH HOH . D 4 HOH E 104 512 512 HOH HOH . D 4 HOH E 105 513 513 HOH HOH . D 4 HOH E 106 514 514 HOH HOH . D 4 HOH E 107 515 515 HOH HOH . D 4 HOH E 108 516 516 HOH HOH . D 4 HOH E 109 517 517 HOH HOH . D 4 HOH E 110 519 519 HOH HOH . D 4 HOH E 111 520 520 HOH HOH . D 4 HOH E 112 521 521 HOH HOH . D 4 HOH E 113 522 522 HOH HOH . D 4 HOH E 114 523 523 HOH HOH . D 4 HOH E 115 524 524 HOH HOH . D 4 HOH E 116 525 525 HOH HOH . D 4 HOH E 117 526 526 HOH HOH . D 4 HOH E 118 527 527 HOH HOH . D 4 HOH E 119 528 528 HOH HOH . D 4 HOH E 120 529 529 HOH HOH . D 4 HOH E 121 530 530 HOH HOH . D 4 HOH E 122 532 532 HOH HOH . D 4 HOH E 123 533 533 HOH HOH . D 4 HOH E 124 534 534 HOH HOH . D 4 HOH E 125 535 535 HOH HOH . D 4 HOH E 126 536 536 HOH HOH . D 4 HOH E 127 537 537 HOH HOH . D 4 HOH E 128 539 539 HOH HOH . D 4 HOH E 129 541 541 HOH HOH . D 4 HOH E 130 542 542 HOH HOH . D 4 HOH E 131 543 543 HOH HOH . D 4 HOH E 132 544 544 HOH HOH . D 4 HOH E 133 545 545 HOH HOH . D 4 HOH E 134 546 546 HOH HOH . D 4 HOH E 135 547 547 HOH HOH . D 4 HOH E 136 548 548 HOH HOH . D 4 HOH E 137 550 550 HOH HOH . D 4 HOH E 138 551 551 HOH HOH . D 4 HOH E 139 552 552 HOH HOH . D 4 HOH E 140 553 553 HOH HOH . D 4 HOH E 141 555 555 HOH HOH . D 4 HOH E 142 556 556 HOH HOH . D 4 HOH E 143 557 557 HOH HOH . D 4 HOH E 144 558 558 HOH HOH . D 4 HOH E 145 559 559 HOH HOH . D 4 HOH E 146 560 560 HOH HOH . D 4 HOH E 147 561 561 HOH HOH . D 4 HOH E 148 562 562 HOH HOH . D 4 HOH E 149 563 563 HOH HOH . D 4 HOH E 150 564 564 HOH HOH . D 4 HOH E 151 565 565 HOH HOH . D 4 HOH E 152 566 566 HOH HOH . D 4 HOH E 153 567 567 HOH HOH . D 4 HOH E 154 568 568 HOH HOH . D 4 HOH E 155 569 569 HOH HOH . D 4 HOH E 156 570 570 HOH HOH . D 4 HOH E 157 571 571 HOH HOH . D 4 HOH E 158 572 572 HOH HOH . D 4 HOH E 159 573 573 HOH HOH . D 4 HOH E 160 574 574 HOH HOH . D 4 HOH E 161 575 575 HOH HOH . D 4 HOH E 162 576 576 HOH HOH . D 4 HOH E 163 577 577 HOH HOH . D 4 HOH E 164 578 578 HOH HOH . D 4 HOH E 165 580 580 HOH HOH . D 4 HOH E 166 581 581 HOH HOH . D 4 HOH E 167 582 582 HOH HOH . D 4 HOH E 168 583 583 HOH HOH . D 4 HOH E 169 584 584 HOH HOH . D 4 HOH E 170 585 585 HOH HOH . D 4 HOH E 171 586 586 HOH HOH . D 4 HOH E 172 587 587 HOH HOH . D 4 HOH E 173 588 588 HOH HOH . D 4 HOH E 174 589 589 HOH HOH . D 4 HOH E 175 590 590 HOH HOH . D 4 HOH E 176 591 591 HOH HOH . D 4 HOH E 177 592 592 HOH HOH . D 4 HOH E 178 593 593 HOH HOH . D 4 HOH E 179 594 594 HOH HOH . D 4 HOH E 180 595 595 HOH HOH . D 4 HOH E 181 596 596 HOH HOH . D 4 HOH E 182 597 597 HOH HOH . D 4 HOH E 183 598 598 HOH HOH . D 4 HOH E 184 599 599 HOH HOH . D 4 HOH E 185 600 600 HOH HOH . D 4 HOH E 186 601 601 HOH HOH . D 4 HOH E 187 602 602 HOH HOH . D 4 HOH E 188 603 603 HOH HOH . D 4 HOH E 189 604 604 HOH HOH . D 4 HOH E 190 605 605 HOH HOH . D 4 HOH E 191 606 606 HOH HOH . D 4 HOH E 192 607 607 HOH HOH . E 4 HOH I 1 403 403 HOH HOH . E 4 HOH I 2 416 416 HOH HOH . E 4 HOH I 3 417 417 HOH HOH . E 4 HOH I 4 418 418 HOH HOH . E 4 HOH I 5 419 419 HOH HOH . E 4 HOH I 6 424 424 HOH HOH . E 4 HOH I 7 488 488 HOH HOH . E 4 HOH I 8 497 497 HOH HOH . E 4 HOH I 9 518 518 HOH HOH . E 4 HOH I 10 531 531 HOH HOH . E 4 HOH I 11 538 538 HOH HOH . E 4 HOH I 12 540 540 HOH HOH . E 4 HOH I 13 549 549 HOH HOH . E 4 HOH I 14 554 554 HOH HOH . E 4 HOH I 15 579 579 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OCT . . . C 3 -1.335 -8.264 -9.894 1 25.68 ? C1 OCT 354 E 1 HETATM 2 C C2 OCT . . . C 3 -2.61 -8.301 -9.016 1 25.36 ? C2 OCT 354 E 1 HETATM 3 C C3 OCT . . . C 3 -3.735 -9.205 -9.576 1 28.46 ? C3 OCT 354 E 1 HETATM 4 C C4 OCT . . . C 3 -5.154 -8.885 -9.028 1 31.42 ? C4 OCT 354 E 1 HETATM 5 C C5 OCT . . . C 3 -6.17 -10.059 -9.126 1 45.24 ? C5 OCT 354 E 1 HETATM 6 C C6 OCT . . . C 3 -7.572 -9.69 -9.682 1 50.41 ? C6 OCT 354 E 1 HETATM 7 C C7 OCT . . . C 3 -8.756 -10.139 -8.774 1 50.57 ? C7 OCT 354 E 1 HETATM 8 C C8 OCT . . . C 3 -10.122 -9.522 -9.172 1 59.27 ? C8 OCT 354 E 1 # _model_server_stats.io_time_ms 83 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #