data_1APT # _model_server_result.job_id 8H6llCdvYTwMS9l0YeBbpA _model_server_result.datetime_utc '2025-07-01 23:23:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1apt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":334}' # _entry.id 1APT # _exptl.entry_id 1APT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description alpha-D-mannopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.15 _cell.angle_gamma 90 _cell.entry_id 1APT _cell.length_a 97.57 _cell.length_b 46.47 _cell.length_c 66.39 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1APT _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 249 E CYS 249 1_555 A SG CYS 283 E CYS 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? covale ? covale1 A OG SER 3 E SER 3 1_555 C C1 MAN . E MAN 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? covale ? covale2 B N LTA 4 I LTA 1 1_555 B C VAL 3 I VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 B N VAL 2 I VAL 3 1_555 B C IVA 1 I IVA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.3 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id MAN _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-mannopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-mannose;D-mannose;mannose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MAN sing 244 n n C1 O1 MAN sing 245 n n C1 O5 MAN sing 246 n n C1 H1 MAN sing 247 n n C2 C3 MAN sing 248 n n C2 O2 MAN sing 249 n n C2 H2 MAN sing 250 n n C3 C4 MAN sing 251 n n C3 O3 MAN sing 252 n n C3 H3 MAN sing 253 n n C4 C5 MAN sing 254 n n C4 O4 MAN sing 255 n n C4 H4 MAN sing 256 n n C5 C6 MAN sing 257 n n C5 O5 MAN sing 258 n n C5 H5 MAN sing 259 n n C6 O6 MAN sing 260 n n C6 H61 MAN sing 261 n n C6 H62 MAN sing 262 n n O1 HO1 MAN sing 263 n n O2 HO2 MAN sing 264 n n O3 HO3 MAN sing 265 n n O4 HO4 MAN sing 266 n n O6 HO6 MAN sing 267 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version MAN DManpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 MAN a-D-mannopyranose 'COMMON NAME' GMML 1 MAN a-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 MAN Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1APT _atom_sites.fract_transf_matrix[1][1] 0.010249 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005032 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021519 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01678 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MAN E 1 334 334 MAN MAN . D 4 HOH E 1 335 335 HOH HOH . D 4 HOH E 2 336 336 HOH HOH . D 4 HOH E 3 337 337 HOH HOH . D 4 HOH E 4 338 338 HOH HOH . D 4 HOH E 5 339 339 HOH HOH . D 4 HOH E 6 340 340 HOH HOH . D 4 HOH E 7 341 341 HOH HOH . D 4 HOH E 8 342 342 HOH HOH . D 4 HOH E 9 343 343 HOH HOH . D 4 HOH E 10 344 344 HOH HOH . D 4 HOH E 11 345 345 HOH HOH . D 4 HOH E 12 346 346 HOH HOH . D 4 HOH E 13 347 347 HOH HOH . D 4 HOH E 14 348 348 HOH HOH . D 4 HOH E 15 349 349 HOH HOH . D 4 HOH E 16 350 350 HOH HOH . D 4 HOH E 17 351 351 HOH HOH . D 4 HOH E 18 352 352 HOH HOH . D 4 HOH E 19 353 353 HOH HOH . D 4 HOH E 20 354 354 HOH HOH . D 4 HOH E 21 355 355 HOH HOH . D 4 HOH E 22 356 356 HOH HOH . D 4 HOH E 23 357 357 HOH HOH . D 4 HOH E 24 358 358 HOH HOH . D 4 HOH E 25 359 359 HOH HOH . D 4 HOH E 26 360 360 HOH HOH . D 4 HOH E 27 361 361 HOH HOH . D 4 HOH E 28 362 362 HOH HOH . D 4 HOH E 29 363 363 HOH HOH . D 4 HOH E 30 364 364 HOH HOH . D 4 HOH E 31 365 365 HOH HOH . D 4 HOH E 32 366 366 HOH HOH . D 4 HOH E 33 367 367 HOH HOH . D 4 HOH E 34 368 368 HOH HOH . D 4 HOH E 35 369 369 HOH HOH . D 4 HOH E 36 370 370 HOH HOH . D 4 HOH E 37 371 371 HOH HOH . D 4 HOH E 38 372 372 HOH HOH . D 4 HOH E 39 373 373 HOH HOH . D 4 HOH E 40 374 374 HOH HOH . D 4 HOH E 41 375 375 HOH HOH . D 4 HOH E 42 376 376 HOH HOH . D 4 HOH E 43 377 377 HOH HOH . D 4 HOH E 44 378 378 HOH HOH . D 4 HOH E 45 379 379 HOH HOH . D 4 HOH E 46 380 380 HOH HOH . D 4 HOH E 47 381 381 HOH HOH . D 4 HOH E 48 382 382 HOH HOH . D 4 HOH E 49 383 383 HOH HOH . D 4 HOH E 50 384 384 HOH HOH . D 4 HOH E 51 385 385 HOH HOH . D 4 HOH E 52 386 386 HOH HOH . D 4 HOH E 53 387 387 HOH HOH . D 4 HOH E 54 388 388 HOH HOH . D 4 HOH E 55 389 389 HOH HOH . D 4 HOH E 56 390 390 HOH HOH . D 4 HOH E 57 391 391 HOH HOH . D 4 HOH E 58 392 392 HOH HOH . D 4 HOH E 59 393 393 HOH HOH . D 4 HOH E 60 394 394 HOH HOH . D 4 HOH E 61 395 395 HOH HOH . D 4 HOH E 62 396 396 HOH HOH . D 4 HOH E 63 397 397 HOH HOH . D 4 HOH E 64 398 398 HOH HOH . D 4 HOH E 65 399 399 HOH HOH . D 4 HOH E 66 400 400 HOH HOH . D 4 HOH E 67 401 401 HOH HOH . D 4 HOH E 68 402 402 HOH HOH . D 4 HOH E 69 403 403 HOH HOH . D 4 HOH E 70 404 404 HOH HOH . D 4 HOH E 71 405 405 HOH HOH . D 4 HOH E 72 406 406 HOH HOH . D 4 HOH E 73 407 407 HOH HOH . D 4 HOH E 74 408 408 HOH HOH . D 4 HOH E 75 410 410 HOH HOH . D 4 HOH E 76 411 411 HOH HOH . D 4 HOH E 77 412 412 HOH HOH . D 4 HOH E 78 413 413 HOH HOH . D 4 HOH E 79 414 414 HOH HOH . D 4 HOH E 80 415 415 HOH HOH . D 4 HOH E 81 416 416 HOH HOH . D 4 HOH E 82 417 417 HOH HOH . D 4 HOH E 83 418 418 HOH HOH . D 4 HOH E 84 419 419 HOH HOH . D 4 HOH E 85 420 420 HOH HOH . D 4 HOH E 86 421 421 HOH HOH . D 4 HOH E 87 422 422 HOH HOH . D 4 HOH E 88 423 423 HOH HOH . D 4 HOH E 89 424 424 HOH HOH . D 4 HOH E 90 425 425 HOH HOH . D 4 HOH E 91 426 426 HOH HOH . D 4 HOH E 92 427 427 HOH HOH . D 4 HOH E 93 428 428 HOH HOH . D 4 HOH E 94 429 429 HOH HOH . D 4 HOH E 95 430 430 HOH HOH . D 4 HOH E 96 431 431 HOH HOH . D 4 HOH E 97 432 432 HOH HOH . D 4 HOH E 98 433 433 HOH HOH . D 4 HOH E 99 434 434 HOH HOH . D 4 HOH E 100 435 435 HOH HOH . D 4 HOH E 101 436 436 HOH HOH . D 4 HOH E 102 437 437 HOH HOH . D 4 HOH E 103 438 438 HOH HOH . D 4 HOH E 104 439 439 HOH HOH . D 4 HOH E 105 440 440 HOH HOH . D 4 HOH E 106 441 441 HOH HOH . D 4 HOH E 107 442 442 HOH HOH . D 4 HOH E 108 443 443 HOH HOH . D 4 HOH E 109 444 444 HOH HOH . D 4 HOH E 110 445 445 HOH HOH . D 4 HOH E 111 446 446 HOH HOH . D 4 HOH E 112 447 447 HOH HOH . D 4 HOH E 113 448 448 HOH HOH . D 4 HOH E 114 449 449 HOH HOH . D 4 HOH E 115 450 450 HOH HOH . D 4 HOH E 116 451 451 HOH HOH . D 4 HOH E 117 452 452 HOH HOH . D 4 HOH E 118 453 453 HOH HOH . D 4 HOH E 119 454 454 HOH HOH . D 4 HOH E 120 455 455 HOH HOH . D 4 HOH E 121 456 456 HOH HOH . D 4 HOH E 122 457 457 HOH HOH . D 4 HOH E 123 458 458 HOH HOH . D 4 HOH E 124 459 459 HOH HOH . D 4 HOH E 125 460 460 HOH HOH . D 4 HOH E 126 461 461 HOH HOH . D 4 HOH E 127 462 462 HOH HOH . D 4 HOH E 128 463 463 HOH HOH . D 4 HOH E 129 464 464 HOH HOH . D 4 HOH E 130 465 465 HOH HOH . D 4 HOH E 131 466 466 HOH HOH . D 4 HOH E 132 467 467 HOH HOH . D 4 HOH E 133 469 469 HOH HOH . D 4 HOH E 134 470 470 HOH HOH . D 4 HOH E 135 471 471 HOH HOH . D 4 HOH E 136 472 472 HOH HOH . D 4 HOH E 137 474 474 HOH HOH . D 4 HOH E 138 475 475 HOH HOH . D 4 HOH E 139 476 476 HOH HOH . D 4 HOH E 140 477 477 HOH HOH . D 4 HOH E 141 478 478 HOH HOH . D 4 HOH E 142 479 479 HOH HOH . D 4 HOH E 143 480 480 HOH HOH . D 4 HOH E 144 481 481 HOH HOH . D 4 HOH E 145 482 482 HOH HOH . D 4 HOH E 146 483 483 HOH HOH . D 4 HOH E 147 484 484 HOH HOH . D 4 HOH E 148 485 485 HOH HOH . D 4 HOH E 149 486 486 HOH HOH . D 4 HOH E 150 487 487 HOH HOH . D 4 HOH E 151 488 488 HOH HOH . D 4 HOH E 152 489 489 HOH HOH . D 4 HOH E 153 490 490 HOH HOH . D 4 HOH E 154 491 491 HOH HOH . D 4 HOH E 155 492 492 HOH HOH . D 4 HOH E 156 493 493 HOH HOH . D 4 HOH E 157 494 494 HOH HOH . D 4 HOH E 158 495 495 HOH HOH . D 4 HOH E 159 496 496 HOH HOH . D 4 HOH E 160 497 497 HOH HOH . D 4 HOH E 161 498 498 HOH HOH . D 4 HOH E 162 499 499 HOH HOH . D 4 HOH E 163 500 500 HOH HOH . D 4 HOH E 164 501 501 HOH HOH . D 4 HOH E 165 502 502 HOH HOH . D 4 HOH E 166 503 503 HOH HOH . D 4 HOH E 167 504 504 HOH HOH . D 4 HOH E 168 505 505 HOH HOH . D 4 HOH E 169 506 506 HOH HOH . D 4 HOH E 170 507 507 HOH HOH . D 4 HOH E 171 508 508 HOH HOH . D 4 HOH E 172 509 509 HOH HOH . D 4 HOH E 173 510 510 HOH HOH . D 4 HOH E 174 511 511 HOH HOH . D 4 HOH E 175 512 512 HOH HOH . D 4 HOH E 176 513 513 HOH HOH . D 4 HOH E 177 514 514 HOH HOH . D 4 HOH E 178 515 515 HOH HOH . D 4 HOH E 179 516 516 HOH HOH . D 4 HOH E 180 517 517 HOH HOH . D 4 HOH E 181 518 518 HOH HOH . D 4 HOH E 182 519 519 HOH HOH . D 4 HOH E 183 520 520 HOH HOH . D 4 HOH E 184 521 521 HOH HOH . D 4 HOH E 185 522 522 HOH HOH . D 4 HOH E 186 523 523 HOH HOH . D 4 HOH E 187 524 524 HOH HOH . D 4 HOH E 188 525 525 HOH HOH . D 4 HOH E 189 526 526 HOH HOH . D 4 HOH E 190 527 527 HOH HOH . D 4 HOH E 191 528 528 HOH HOH . D 4 HOH E 192 529 529 HOH HOH . D 4 HOH E 193 530 530 HOH HOH . D 4 HOH E 194 531 531 HOH HOH . D 4 HOH E 195 532 532 HOH HOH . D 4 HOH E 196 533 533 HOH HOH . D 4 HOH E 197 534 534 HOH HOH . D 4 HOH E 198 535 535 HOH HOH . D 4 HOH E 199 536 536 HOH HOH . D 4 HOH E 200 537 537 HOH HOH . D 4 HOH E 201 538 538 HOH HOH . D 4 HOH E 202 539 539 HOH HOH . D 4 HOH E 203 540 540 HOH HOH . D 4 HOH E 204 541 541 HOH HOH . D 4 HOH E 205 542 542 HOH HOH . D 4 HOH E 206 543 543 HOH HOH . D 4 HOH E 207 544 544 HOH HOH . D 4 HOH E 208 545 545 HOH HOH . D 4 HOH E 209 546 546 HOH HOH . D 4 HOH E 210 547 547 HOH HOH . D 4 HOH E 211 548 548 HOH HOH . D 4 HOH E 212 549 549 HOH HOH . D 4 HOH E 213 550 550 HOH HOH . D 4 HOH E 214 551 551 HOH HOH . D 4 HOH E 215 552 552 HOH HOH . D 4 HOH E 216 553 553 HOH HOH . D 4 HOH E 217 554 554 HOH HOH . D 4 HOH E 218 555 555 HOH HOH . D 4 HOH E 219 556 556 HOH HOH . D 4 HOH E 220 557 557 HOH HOH . D 4 HOH E 221 558 558 HOH HOH . D 4 HOH E 222 559 559 HOH HOH . D 4 HOH E 223 560 560 HOH HOH . D 4 HOH E 224 561 561 HOH HOH . D 4 HOH E 225 562 562 HOH HOH . D 4 HOH E 226 563 563 HOH HOH . D 4 HOH E 227 564 564 HOH HOH . D 4 HOH E 228 565 565 HOH HOH . D 4 HOH E 229 566 566 HOH HOH . D 4 HOH E 230 567 567 HOH HOH . D 4 HOH E 231 568 568 HOH HOH . D 4 HOH E 232 569 569 HOH HOH . D 4 HOH E 233 570 570 HOH HOH . D 4 HOH E 234 571 571 HOH HOH . D 4 HOH E 235 572 572 HOH HOH . D 4 HOH E 236 573 573 HOH HOH . D 4 HOH E 237 574 574 HOH HOH . D 4 HOH E 238 575 575 HOH HOH . D 4 HOH E 239 576 576 HOH HOH . D 4 HOH E 240 577 577 HOH HOH . D 4 HOH E 241 578 578 HOH HOH . D 4 HOH E 242 579 579 HOH HOH . D 4 HOH E 243 580 580 HOH HOH . D 4 HOH E 244 581 581 HOH HOH . E 4 HOH I 1 409 409 HOH HOH . E 4 HOH I 2 468 468 HOH HOH . E 4 HOH I 3 473 473 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MAN . . . C 3 30.105 27.996 -0.42 1 14.88 ? C1 MAN 334 E 1 HETATM 2 C C2 MAN . . . C 3 30.163 27.509 -1.854 1 17.85 ? C2 MAN 334 E 1 HETATM 3 C C3 MAN . . . C 3 31.574 27.722 -2.417 1 19.47 ? C3 MAN 334 E 1 HETATM 4 C C4 MAN . . . C 3 31.988 29.191 -2.243 1 17.35 ? C4 MAN 334 E 1 HETATM 5 C C5 MAN . . . C 3 31.951 29.489 -0.746 1 17.64 ? C5 MAN 334 E 1 HETATM 6 C C6 MAN . . . C 3 32.385 30.904 -0.343 1 18.69 ? C6 MAN 334 E 1 HETATM 7 O O2 MAN . . . C 3 29.191 28.384 -2.522 1 19.78 ? O2 MAN 334 E 1 HETATM 8 O O3 MAN . . . C 3 31.552 27.425 -3.823 1 23.12 ? O3 MAN 334 E 1 HETATM 9 O O4 MAN . . . C 3 33.308 29.371 -2.744 1 17.9 ? O4 MAN 334 E 1 HETATM 10 O O5 MAN . . . C 3 30.574 29.331 -0.285 1 14.73 ? O5 MAN 334 E 1 HETATM 11 O O6 MAN . . . C 3 31.382 31.823 -0.779 1 22.65 ? O6 MAN 334 E 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 11 #