data_1AQB
#
_model_server_result.job_id            fvt6u42MVraVILuFfuzm3g 
_model_server_result.datetime_utc      '2024-11-24 13:07:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1aqb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":185}' 
#
_entry.id    1AQB 
#
_exptl.entry_id    1AQB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              286.452 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            RETINOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1AQB 
_cell.length_a            45.81 
_cell.length_b            53.137 
_cell.length_c            72.966 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1AQB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 4 A CYS 4 1_555 A SG CYS 160 A CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf2 A SG CYS 70 A CYS 70 1_555 A SG CYS 174 A CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf3 A SG CYS 120 A CYS 120 1_555 A SG CYS 129 A CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
metalc ? metalc1 A OE1 GLU 33 A GLU 33 3_554 B CD CD . A CD 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? 
metalc ? metalc2 A OE2 GLU 33 A GLU 33 3_554 B CD CD . A CD 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? 
metalc ? metalc3 A OD1 ASP 140 A ASP 140 1_555 B CD CD . A CD 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? 
metalc ? metalc4 A OD2 ASP 140 A ASP 140 1_555 B CD CD . A CD 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? 
metalc ? metalc5 A ND1 HIS 142 A HIS 142 1_555 B CD CD . A CD 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc6 B CD CD . A CD 184 1_555 D O HOH . A HOH 350 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc7 B CD CD . A CD 184 1_555 D O HOH . A HOH 351 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? 
#
_chem_comp.formula           'C20 H30 O' 
_chem_comp.formula_weight    286.452 
_chem_comp.id                RTL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              RETINOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 RTL sing 277 n n 
C1 C6 RTL sing 278 n n 
C1 C16 RTL sing 279 n n 
C1 C17 RTL sing 280 n n 
C2 C3 RTL sing 281 n n 
C2 H21 RTL sing 282 n n 
C2 H22 RTL sing 283 n n 
C3 C4 RTL sing 284 n n 
C3 H31 RTL sing 285 n n 
C3 H32 RTL sing 286 n n 
C4 C5 RTL sing 287 n n 
C4 H41 RTL sing 288 n n 
C4 H42 RTL sing 289 n n 
C5 C6 RTL doub 290 n n 
C5 C18 RTL sing 291 n n 
C6 C7 RTL sing 292 n n 
C7 C8 RTL doub 293 e n 
C7 H7 RTL sing 294 n n 
C8 C9 RTL sing 295 n n 
C8 H8 RTL sing 296 n n 
C9 C10 RTL doub 297 e n 
C9 C19 RTL sing 298 n n 
C10 C11 RTL sing 299 n n 
C10 H10 RTL sing 300 n n 
C11 C12 RTL doub 301 e n 
C11 H11 RTL sing 302 n n 
C12 C13 RTL sing 303 n n 
C12 H12 RTL sing 304 n n 
C13 C14 RTL doub 305 e n 
C13 C20 RTL sing 306 n n 
C14 C15 RTL sing 307 n n 
C14 H14 RTL sing 308 n n 
C15 O1 RTL sing 309 n n 
C15 H151 RTL sing 310 n n 
C15 H152 RTL sing 311 n n 
O1 HO1 RTL sing 312 n n 
C16 H161 RTL sing 313 n n 
C16 H162 RTL sing 314 n n 
C16 H163 RTL sing 315 n n 
C17 H171 RTL sing 316 n n 
C17 H172 RTL sing 317 n n 
C17 H173 RTL sing 318 n n 
C18 H181 RTL sing 319 n n 
C18 H182 RTL sing 320 n n 
C18 H183 RTL sing 321 n n 
C19 H191 RTL sing 322 n n 
C19 H192 RTL sing 323 n n 
C19 H193 RTL sing 324 n n 
C20 H201 RTL sing 325 n n 
C20 H202 RTL sing 326 n n 
C20 H203 RTL sing 327 n n 
#
_atom_sites.entry_id                     1AQB 
_atom_sites.fract_transf_matrix[1][1]    0.021829 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018819 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013705 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CD A 1 184 178 CD CD . 
C 3 RTL A 1 185 177 RTL RTL . 
D 4 HOH A 1 300 300 HOH HOH . 
D 4 HOH A 2 301 301 HOH HOH . 
D 4 HOH A 3 302 302 HOH HOH . 
D 4 HOH A 4 303 303 HOH HOH . 
D 4 HOH A 5 304 304 HOH HOH . 
D 4 HOH A 6 305 305 HOH HOH . 
D 4 HOH A 7 306 306 HOH HOH . 
D 4 HOH A 8 307 307 HOH HOH . 
D 4 HOH A 9 308 308 HOH HOH . 
D 4 HOH A 10 309 309 HOH HOH . 
D 4 HOH A 11 310 310 HOH HOH . 
D 4 HOH A 12 311 311 HOH HOH . 
D 4 HOH A 13 312 312 HOH HOH . 
D 4 HOH A 14 313 313 HOH HOH . 
D 4 HOH A 15 314 314 HOH HOH . 
D 4 HOH A 16 315 315 HOH HOH . 
D 4 HOH A 17 316 316 HOH HOH . 
D 4 HOH A 18 317 317 HOH HOH . 
D 4 HOH A 19 318 318 HOH HOH . 
D 4 HOH A 20 319 319 HOH HOH . 
D 4 HOH A 21 320 320 HOH HOH . 
D 4 HOH A 22 321 321 HOH HOH . 
D 4 HOH A 23 322 322 HOH HOH . 
D 4 HOH A 24 323 323 HOH HOH . 
D 4 HOH A 25 324 324 HOH HOH . 
D 4 HOH A 26 325 325 HOH HOH . 
D 4 HOH A 27 326 326 HOH HOH . 
D 4 HOH A 28 327 327 HOH HOH . 
D 4 HOH A 29 328 328 HOH HOH . 
D 4 HOH A 30 329 329 HOH HOH . 
D 4 HOH A 31 330 330 HOH HOH . 
D 4 HOH A 32 331 331 HOH HOH . 
D 4 HOH A 33 332 332 HOH HOH . 
D 4 HOH A 34 333 333 HOH HOH . 
D 4 HOH A 35 334 334 HOH HOH . 
D 4 HOH A 36 335 335 HOH HOH . 
D 4 HOH A 37 336 336 HOH HOH . 
D 4 HOH A 38 337 337 HOH HOH . 
D 4 HOH A 39 338 338 HOH HOH . 
D 4 HOH A 40 339 339 HOH HOH . 
D 4 HOH A 41 340 340 HOH HOH . 
D 4 HOH A 42 341 341 HOH HOH . 
D 4 HOH A 43 342 342 HOH HOH . 
D 4 HOH A 44 343 343 HOH HOH . 
D 4 HOH A 45 344 344 HOH HOH . 
D 4 HOH A 46 345 345 HOH HOH . 
D 4 HOH A 47 346 346 HOH HOH . 
D 4 HOH A 48 347 347 HOH HOH . 
D 4 HOH A 49 348 348 HOH HOH . 
D 4 HOH A 50 349 349 HOH HOH . 
D 4 HOH A 51 350 350 HOH HOH . 
D 4 HOH A 52 351 351 HOH HOH . 
D 4 HOH A 53 352 352 HOH HOH . 
D 4 HOH A 54 353 353 HOH HOH . 
D 4 HOH A 55 354 354 HOH HOH . 
D 4 HOH A 56 355 355 HOH HOH . 
D 4 HOH A 57 356 356 HOH HOH . 
D 4 HOH A 58 357 357 HOH HOH . 
D 4 HOH A 59 358 358 HOH HOH . 
D 4 HOH A 60 359 359 HOH HOH . 
D 4 HOH A 61 360 360 HOH HOH . 
D 4 HOH A 62 361 361 HOH HOH . 
D 4 HOH A 63 362 362 HOH HOH . 
D 4 HOH A 64 363 363 HOH HOH . 
D 4 HOH A 65 364 364 HOH HOH . 
D 4 HOH A 66 365 365 HOH HOH . 
D 4 HOH A 67 366 366 HOH HOH . 
D 4 HOH A 68 367 367 HOH HOH . 
D 4 HOH A 69 368 368 HOH HOH . 
D 4 HOH A 70 369 369 HOH HOH . 
D 4 HOH A 71 370 370 HOH HOH . 
D 4 HOH A 72 371 371 HOH HOH . 
D 4 HOH A 73 372 372 HOH HOH . 
D 4 HOH A 74 373 373 HOH HOH . 
D 4 HOH A 75 374 374 HOH HOH . 
D 4 HOH A 76 375 375 HOH HOH . 
D 4 HOH A 77 376 376 HOH HOH . 
D 4 HOH A 78 377 377 HOH HOH . 
D 4 HOH A 79 378 378 HOH HOH . 
D 4 HOH A 80 379 379 HOH HOH . 
D 4 HOH A 81 380 380 HOH HOH . 
D 4 HOH A 82 381 381 HOH HOH . 
D 4 HOH A 83 382 382 HOH HOH . 
D 4 HOH A 84 383 383 HOH HOH . 
D 4 HOH A 85 384 384 HOH HOH . 
D 4 HOH A 86 385 385 HOH HOH . 
D 4 HOH A 87 386 386 HOH HOH . 
D 4 HOH A 88 387 387 HOH HOH . 
D 4 HOH A 89 388 388 HOH HOH . 
D 4 HOH A 90 389 389 HOH HOH . 
D 4 HOH A 91 390 390 HOH HOH . 
D 4 HOH A 92 391 391 HOH HOH . 
D 4 HOH A 93 392 392 HOH HOH . 
D 4 HOH A 94 393 393 HOH HOH . 
D 4 HOH A 95 394 394 HOH HOH . 
D 4 HOH A 96 395 395 HOH HOH . 
D 4 HOH A 97 396 396 HOH HOH . 
D 4 HOH A 98 397 397 HOH HOH . 
D 4 HOH A 99 398 398 HOH HOH . 
D 4 HOH A 100 399 399 HOH HOH . 
D 4 HOH A 101 400 400 HOH HOH . 
D 4 HOH A 102 401 401 HOH HOH . 
D 4 HOH A 103 402 402 HOH HOH . 
D 4 HOH A 104 403 403 HOH HOH . 
D 4 HOH A 105 404 404 HOH HOH . 
D 4 HOH A 106 405 405 HOH HOH . 
D 4 HOH A 107 406 406 HOH HOH . 
D 4 HOH A 108 407 407 HOH HOH . 
D 4 HOH A 109 408 408 HOH HOH . 
D 4 HOH A 110 409 409 HOH HOH . 
D 4 HOH A 111 410 410 HOH HOH . 
D 4 HOH A 112 411 411 HOH HOH . 
D 4 HOH A 113 412 412 HOH HOH . 
D 4 HOH A 114 413 413 HOH HOH . 
D 4 HOH A 115 414 414 HOH HOH . 
D 4 HOH A 116 415 415 HOH HOH . 
D 4 HOH A 117 416 416 HOH HOH . 
D 4 HOH A 118 417 417 HOH HOH . 
D 4 HOH A 119 418 418 HOH HOH . 
D 4 HOH A 120 419 419 HOH HOH . 
D 4 HOH A 121 420 420 HOH HOH . 
D 4 HOH A 122 421 421 HOH HOH . 
D 4 HOH A 123 422 422 HOH HOH . 
D 4 HOH A 124 423 423 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RTL . . . C 3 0.507 4.585 -7.709 1 22.66 ? C1 RTL 185 A 1 
HETATM 2 C C2 RTL . . . C 3 0.78 6.02 -8.208 1 22.76 ? C2 RTL 185 A 1 
HETATM 3 C C3 RTL . . . C 3 -0.086 7.022 -7.465 1 21.02 ? C3 RTL 185 A 1 
HETATM 4 C C4 RTL . . . C 3 -0.682 7.049 -6.069 1 16.69 ? C4 RTL 185 A 1 
HETATM 5 C C5 RTL . . . C 3 -0.603 5.593 -5.622 1 21.6 ? C5 RTL 185 A 1 
HETATM 6 C C6 RTL . . . C 3 -0.146 4.5 -6.32 1 18.83 ? C6 RTL 185 A 1 
HETATM 7 C C7 RTL . . . C 3 -0.288 3.138 -5.805 1 18.41 ? C7 RTL 185 A 1 
HETATM 8 C C8 RTL . . . C 3 -1.467 2.55 -5.517 1 18.45 ? C8 RTL 185 A 1 
HETATM 9 C C9 RTL . . . C 3 -1.531 1.175 -5.043 1 16.01 ? C9 RTL 185 A 1 
HETATM 10 C C10 RTL . . . C 3 -2.732 0.697 -4.592 1 20.05 ? C10 RTL 185 A 1 
HETATM 11 C C11 RTL . . . C 3 -3.071 -0.664 -4.129 1 19.45 ? C11 RTL 185 A 1 
HETATM 12 C C12 RTL . . . C 3 -4.419 -0.846 -4.04 1 19.24 ? C12 RTL 185 A 1 
HETATM 13 C C13 RTL . . . C 3 -5.257 -2 -3.734 1 26.27 ? C13 RTL 185 A 1 
HETATM 14 C C14 RTL . . . C 3 -6.485 -2.094 -3.147 1 26.3 ? C14 RTL 185 A 1 
HETATM 15 C C15 RTL . . . C 3 -6.895 -3.403 -2.612 1 30.92 ? C15 RTL 185 A 1 
HETATM 16 O O1 RTL . . . C 3 -7.316 -3.327 -1.315 1 31.33 ? O1 RTL 185 A 1 
HETATM 17 C C16 RTL . . . C 3 1.944 4.031 -7.69 1 15.38 ? C16 RTL 185 A 1 
HETATM 18 C C17 RTL . . . C 3 -0.274 3.923 -8.847 1 22.39 ? C17 RTL 185 A 1 
HETATM 19 C C18 RTL . . . C 3 -1.516 5.371 -4.416 1 16.28 ? C18 RTL 185 A 1 
HETATM 20 C C19 RTL . . . C 3 -0.216 0.485 -4.685 1 19.82 ? C19 RTL 185 A 1 
HETATM 21 C C20 RTL . . . C 3 -4.209 -3.037 -3.331 1 33.09 ? C20 RTL 185 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           215 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           21 
#