data_1AQI # _model_server_result.job_id bHs1b1wQ83vD-SHUGh9vdg _model_server_result.datetime_utc '2025-01-03 00:46:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1aqi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":500}' # _entry.id 1AQI # _exptl.entry_id 1AQI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1AQI _cell.length_a 132.08 _cell.length_b 144.06 _cell.length_c 53.44 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AQI _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 277 n n N HN1 SAH sing 278 n n N HN2 SAH sing 279 n n CA CB SAH sing 280 n n CA C SAH sing 281 n n CA HA SAH sing 282 n n CB CG SAH sing 283 n n CB HB1 SAH sing 284 n n CB HB2 SAH sing 285 n n CG SD SAH sing 286 n n CG HG1 SAH sing 287 n n CG HG2 SAH sing 288 n n SD C5' SAH sing 289 n n C O SAH doub 290 n n C OXT SAH sing 291 n n OXT HXT SAH sing 292 n n C5' C4' SAH sing 293 n n C5' "H5'1" SAH sing 294 n n C5' "H5'2" SAH sing 295 n n C4' O4' SAH sing 296 n n C4' C3' SAH sing 297 n n C4' H4' SAH sing 298 n n O4' C1' SAH sing 299 n n C3' O3' SAH sing 300 n n C3' C2' SAH sing 301 n n C3' H3' SAH sing 302 n n O3' HO3' SAH sing 303 n n C2' O2' SAH sing 304 n n C2' C1' SAH sing 305 n n C2' H2' SAH sing 306 n n O2' HO2' SAH sing 307 n n C1' N9 SAH sing 308 n n C1' H1' SAH sing 309 n n N9 C8 SAH sing 310 n y N9 C4 SAH sing 311 n y C8 N7 SAH doub 312 n y C8 H8 SAH sing 313 n n N7 C5 SAH sing 314 n y C5 C6 SAH sing 315 n y C5 C4 SAH doub 316 n y C6 N6 SAH sing 317 n n C6 N1 SAH doub 318 n y N6 HN61 SAH sing 319 n n N6 HN62 SAH sing 320 n n N1 C2 SAH sing 321 n y C2 N3 SAH doub 322 n y C2 H2 SAH sing 323 n n N3 C4 SAH sing 324 n y # _atom_sites.entry_id 1AQI _atom_sites.fract_transf_matrix[1][1] 0.007571 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006942 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018713 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAH A 1 500 500 SAH SAH . D 2 SAH B 1 500 500 SAH SAH . E 3 HOH A 1 501 600 HOH HOH . E 3 HOH A 2 502 601 HOH HOH . E 3 HOH A 3 503 602 HOH HOH . E 3 HOH A 4 504 603 HOH HOH . E 3 HOH A 5 505 604 HOH HOH . E 3 HOH A 6 506 605 HOH HOH . E 3 HOH A 7 507 606 HOH HOH . E 3 HOH A 8 508 607 HOH HOH . E 3 HOH A 9 509 608 HOH HOH . E 3 HOH A 10 510 609 HOH HOH . E 3 HOH A 11 511 610 HOH HOH . E 3 HOH A 12 512 611 HOH HOH . E 3 HOH A 13 513 612 HOH HOH . E 3 HOH A 14 514 613 HOH HOH . E 3 HOH A 15 515 614 HOH HOH . E 3 HOH A 16 516 615 HOH HOH . E 3 HOH A 17 517 616 HOH HOH . E 3 HOH A 18 518 617 HOH HOH . E 3 HOH A 19 519 618 HOH HOH . E 3 HOH A 20 520 619 HOH HOH . E 3 HOH A 21 521 620 HOH HOH . E 3 HOH A 22 522 621 HOH HOH . E 3 HOH A 23 523 622 HOH HOH . E 3 HOH A 24 524 623 HOH HOH . E 3 HOH A 25 525 624 HOH HOH . E 3 HOH A 26 526 625 HOH HOH . E 3 HOH A 27 527 626 HOH HOH . E 3 HOH A 28 528 627 HOH HOH . E 3 HOH A 29 529 628 HOH HOH . E 3 HOH A 30 530 629 HOH HOH . E 3 HOH A 31 531 630 HOH HOH . E 3 HOH A 32 532 631 HOH HOH . E 3 HOH A 33 533 632 HOH HOH . E 3 HOH A 34 534 633 HOH HOH . E 3 HOH A 35 535 634 HOH HOH . E 3 HOH A 36 536 635 HOH HOH . F 3 HOH B 1 501 600 HOH HOH . F 3 HOH B 2 502 601 HOH HOH . F 3 HOH B 3 503 602 HOH HOH . F 3 HOH B 4 504 603 HOH HOH . F 3 HOH B 5 505 604 HOH HOH . F 3 HOH B 6 506 605 HOH HOH . F 3 HOH B 7 507 606 HOH HOH . F 3 HOH B 8 508 607 HOH HOH . F 3 HOH B 9 509 608 HOH HOH . F 3 HOH B 10 510 609 HOH HOH . F 3 HOH B 11 511 610 HOH HOH . F 3 HOH B 12 512 611 HOH HOH . F 3 HOH B 13 513 612 HOH HOH . F 3 HOH B 14 514 613 HOH HOH . F 3 HOH B 15 515 614 HOH HOH . F 3 HOH B 16 516 615 HOH HOH . F 3 HOH B 17 517 616 HOH HOH . F 3 HOH B 18 518 617 HOH HOH . F 3 HOH B 19 519 619 HOH HOH . F 3 HOH B 20 520 620 HOH HOH . F 3 HOH B 21 521 621 HOH HOH . F 3 HOH B 22 522 622 HOH HOH . F 3 HOH B 23 523 623 HOH HOH . F 3 HOH B 24 524 624 HOH HOH . F 3 HOH B 25 525 625 HOH HOH . F 3 HOH B 26 526 626 HOH HOH . F 3 HOH B 27 527 627 HOH HOH . F 3 HOH B 28 528 628 HOH HOH . F 3 HOH B 29 529 629 HOH HOH . F 3 HOH B 30 530 630 HOH HOH . F 3 HOH B 31 531 631 HOH HOH . F 3 HOH B 32 532 632 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . C 2 35.098 37.276 16.373 1 22.14 ? N SAH 500 A 1 HETATM 2 C CA SAH . . . C 2 35.368 38.132 15.225 1 26.49 ? CA SAH 500 A 1 HETATM 3 C CB SAH . . . C 2 36.55 39.08 15.515 1 26.55 ? CB SAH 500 A 1 HETATM 4 C CG SAH . . . C 2 37.899 38.409 15.775 1 24.72 ? CG SAH 500 A 1 HETATM 5 S SD SAH . . . C 2 39.256 39.561 16.113 1 23.07 ? SD SAH 500 A 1 HETATM 6 C C SAH . . . C 2 35.626 37.3 13.97 1 25.35 ? C SAH 500 A 1 HETATM 7 O O SAH . . . C 2 35.283 36.099 13.979 1 29.1 ? O SAH 500 A 1 HETATM 8 O OXT SAH . . . C 2 36.165 37.849 12.99 1 29.87 ? OXT SAH 500 A 1 HETATM 9 C C5' SAH . . . C 2 40.634 39.323 14.978 1 19.95 ? C5' SAH 500 A 1 HETATM 10 C C4' SAH . . . C 2 41.916 40.028 15.414 1 29.89 ? C4' SAH 500 A 1 HETATM 11 O O4' SAH . . . C 2 42.748 39.123 16.183 1 33.35 ? O4' SAH 500 A 1 HETATM 12 C C3' SAH . . . C 2 42.73 40.469 14.207 1 32.79 ? C3' SAH 500 A 1 HETATM 13 O O3' SAH . . . C 2 43.289 41.771 14.444 1 34.95 ? O3' SAH 500 A 1 HETATM 14 C C2' SAH . . . C 2 43.837 39.457 14.1 1 32.26 ? C2' SAH 500 A 1 HETATM 15 O O2' SAH . . . C 2 45.04 40.068 13.634 1 36.18 ? O2' SAH 500 A 1 HETATM 16 C C1' SAH . . . C 2 44.006 38.922 15.501 1 29.12 ? C1' SAH 500 A 1 HETATM 17 N N9 SAH . . . C 2 44.367 37.503 15.474 1 25.48 ? N9 SAH 500 A 1 HETATM 18 C C8 SAH . . . C 2 43.886 36.511 14.692 1 24.39 ? C8 SAH 500 A 1 HETATM 19 N N7 SAH . . . C 2 44.397 35.339 14.85 1 23.54 ? N7 SAH 500 A 1 HETATM 20 C C5 SAH . . . C 2 45.334 35.56 15.858 1 20.13 ? C5 SAH 500 A 1 HETATM 21 C C6 SAH . . . C 2 46.217 34.703 16.525 1 24.22 ? C6 SAH 500 A 1 HETATM 22 N N6 SAH . . . C 2 46.349 33.406 16.209 1 23.53 ? N6 SAH 500 A 1 HETATM 23 N N1 SAH . . . C 2 46.983 35.243 17.5 1 22.04 ? N1 SAH 500 A 1 HETATM 24 C C2 SAH . . . C 2 46.869 36.546 17.772 1 19.65 ? C2 SAH 500 A 1 HETATM 25 N N3 SAH . . . C 2 46.079 37.455 17.211 1 21.3 ? N3 SAH 500 A 1 HETATM 26 C C4 SAH . . . C 2 45.324 36.882 16.249 1 21.8 ? C4 SAH 500 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 491 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #